Protein structure and dynamics

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Protein structure and dynamics

Protein structure and dynamics

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• Only 20 different types of<br />

amino acids are used by<br />

proteins<br />

• Bonding of amino acids in<br />

different sequences makes all<br />

the protein diversity

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The Darsee Case

Building 3D models of proteins Why make a structural model for your ...

ProDy: Protein Dynamics Inferred from Theory and Experiments

Hwang Woo-Suk was a very successful and well-known biomedical ...

Duquesne University - University of Pittsburgh

Modeling the deamidation of asparagine residues via succinimide ...

• Only 20 different types of amino acids are used by proteins • Bonding of amino acids in different sequences makes all the protein diversity

Definition of dihedral angles Range: -180 0 to 180 0 180 0 = trans -60 0 = gauche + 60 0 = gauche - 0 0 = cis

Page 1 and 2: Protein structure and dynamics Arte
Page 3: A protein consists of a sequence of
Page 7 and 8: The peptide plane
Page 9 and 10: Side chains enjoy additional degree
Page 11 and 12: A closer look at Alpha-helix Helica
Page 13 and 14: Supersecondary structures Schematic
Page 15 and 16: Contact Maps Describe Protein Topol
Page 17: The Protein Data Bank (PDB) • Ele
Page 20 and 21: Large Structural Changes Example:
Page 22 and 23: Large Structural Changes: Allostery
Page 24 and 25: Important mode in HIV-1 RT p66 thum