KiNET User Guide - Kinexus Bioinformatics Corporation

Proteins Details
It provides basic information on the proteins measured and has hyperlinks to
Pubmed, Swissprot, Refseq, OMIM and LocusLink. The appropriate
database name will not appear hyperlinked if the Protein does not have the
required information.
Protein Comparison
This page allows the users to perform a pairwise comparison of protein
measured on a same screen. The search brings back details of the samples
where the 2 proteins appear.
On this page the users must first select a screen to compare, then the dropdown
boxes for Protein #1 and Protein #2 are filled with the proteins from
that screen. The users can then pick one protein in each drop-down box and
compare them. They can also narrow down the results using the comboboxes
on the right.
As part of the results, the users see the value of the Pearson correlation
coefficient computed from the values of the %CFC for the 2 proteins on
each sample. As part of the computation of the correlation coefficient a max
value has been set and that value is used in the calculation whenever the
%CFC is greater than that max value. It helps correct the impact of very high
%CFC values on the overall calculation (this is usually the result of a very
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