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2 R topics documented: R topics documented: abs.error.pred . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 all.is.numeric . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 approxExtrap . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 areg . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 aregImpute . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12 binconf . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20 biVar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21 bootkm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24 bpower . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 26 bpplot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28 bystats . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 30 capitalize . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 32 ciapower . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 33 cnvrt.coords . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 34 combine . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37 contents . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 38 cpower . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 40 Cs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 42 csv.get . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 43 curveRep . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 45 cut2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 50 data.frame.create.modify.check . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51 dataRep . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 59 deff . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 62 describe . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 63 discrete . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 67 dotchart2 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 69 dropUnusedLevels . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 71 Ecdf . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 72 eip . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 76 equalBins . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 76 errbar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 77 escapeRegex . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 79 event.chart . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 80 event.convert . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 91 event.history . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 92 find.matches . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 98 first.word . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 102 format.df . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 103 format.pval . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 105 gbayes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 106 getHdata . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 113 getZip . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 115 hdquantile . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 116 hist.data.frame . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 117 histbackback . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 118
R topics documented: 3 HmiscOverview . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 120 hoeffd . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 126 html . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 128 impute . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 129 inc-dec . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 131 labcurve . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 132 label . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 141 Lag . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 144 latex . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 145 ldBands . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 154 list.tree . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 158 makeNstr . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 159 mApply . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 160 mChoice . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 161 mdb.get . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 165 mgp.axis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 166 mhgr . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 168 minor.tick . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 170 Misc . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171 mtitle . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175 na.delete . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 176 na.detail.response . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 177 na.keep . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 179 nstr . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 180 panel.bpplot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 181 partition . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 184 pc1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 185 plotCorrPrecision . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 186 plsmo . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 187 popower . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 190 print.char.list . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 191 print.char.matrix . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 193 prnz . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 194 ps.slide . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 195 pstamp . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 200 rcorr . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 201 rcorr.cens . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 202 rcorrp.cens . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 205 rcspline.eval . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 207 rcspline.plot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 208 rcspline.restate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 210 redun . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 212 reorder.factor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 214 require<strong>Package</strong> . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 215 reShape . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 216 rlegend . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 219 rm.boot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 221 rMultinom . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 228
Page 1: Package ‘Hmisc’ April 29, 2009
Page 5 and 6: abs.error.pred 5 abs.error.pred Ind
Page 7 and 8: approxExtrap 7 Examples all.is.nume
Page 9 and 10: areg 9 y xtype ytype nk B na.rm tol
Page 11 and 12: areg 11 ## Not run: # Examine overf
Page 13 and 14: aregImpute 13 Usage A print method
Page 15 and 16: aregImpute 15 burnin pr plotTrans t
Page 17 and 18: aregImpute 17 Author(s) Frank Harre
Page 19 and 20: aregImpute 19 # plot(1:100, f$imput
Page 21 and 22: inconf 21 method include.x include.
Page 23 and 24: iVar 23 spearman2(formula, data=NUL
Page 25 and 26: ootkm 25 bootkm Bootstrap Kaplan-Me
Page 27 and 28: power 27 bsamsize(p1, p2, fraction=
Page 29 and 30: pplot 29 Description Producess side
Page 31 and 32: ystats 31 a missing value causes th
Page 33 and 34: ciapower 33 Value Returns a vector
Page 35 and 36: cnvrt.coords 35 Arguments x y input
Page 37 and 38: combine 37 ## create a subplot with
Page 39 and 40: contents 39 contents(object, dslabe
Page 41 and 42: cpower 41 Details Value For handlin
Page 43 and 44: csv.get 43 Description Makes a vect
Page 45 and 46: curveRep 45 Value a new data frame.
Page 47 and 48: curveRep 47 extrap pr which method
Page 49 and 50: curveRep 49 Examples ## Not run: #
Page 51 and 52: cut2 51 Usage cut2(x, cuts, m, g, l
Page 53 and 54:
data.frame.create.modify.check 53 S
Page 55 and 56:
data.frame.create.modify.check 55 #
Page 57 and 58:
Page 59 and 60:
Page 61 and 62:
dataRep 61 Usage variables, the per
Page 63 and 64:
describe 63 Usage deff(y, cluster)
Page 65 and 66:
describe 65 may or may not have a r
Page 67 and 68:
describe 67 #get quantiles .05,.10,
Page 69 and 70:
dotchart2 69 Details as.discrete co
Page 71 and 72:
dropUnusedLevels 71 xaxis set to FA
Page 73 and 74:
Ecdf 73 Usage Ecdf(x, ...) ## Defau
Page 75 and 76:
Ecdf 75 Value for Ecdf.default an i
Page 77 and 78:
equalBins 77 equalBins Multicolumn
Page 79 and 80:
errbar 79 panel.first panel.last as
Page 81 and 82:
event.chart 81 event.chart Flexible
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event.chart 83 or an S-Plus dates o
Page 85 and 86:
event.chart 85 If "custom" is chose
Page 87 and 88:
event.chart 87 subset.c) specified
Page 89 and 90:
event.chart 89 Dubin, J.A., Lee, J.
Page 91 and 92:
event.convert 91 # To produce more
Page 93 and 94:
event.history 93 Description Usage
Page 95 and 96:
event.history 95 the individual rig
Page 97 and 98:
event.history 97 plot(heart.surv, y
Page 99 and 100:
find.matches 99 ## S3 method for cl
Page 101 and 102:
find.matches 101 # For many applica
Page 103 and 104:
format.df 103 Value a character str
Page 105 and 106:
format.df 105 \tabular environment
Page 107 and 108:
gbayes 107 gbayes Gaussian Bayesian
Page 109 and 110:
gbayes 109 sd prior pcdf delta v n1
Page 111 and 112:
gbayes 111 stat
Page 113 and 114:
getHdata 113 # Get the posterior de
Page 115 and 116:
getZip 115 Examples ## Not run: get
Page 117 and 118:
hist.data.frame 117 Author(s) Frank
Page 119 and 120:
histbackback 119 Arguments Value x,
Page 121 and 122:
HmiscOverview 121 ciapower cleanup.
Page 123 and 124:
HmiscOverview 123 minor.tick mtitle
Page 125 and 126:
HmiscOverview 125 sys tex transace
Page 127 and 128:
hoeffd 127 Usage hoeffd(x) hoeffd(x
Page 129 and 130:
html 129 file name of the file to c
Page 131 and 132:
inc-dec 131 Value object ... ignore
Page 133 and 134:
labcurve 133 To add a legend defini
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labcurve 135 y for putKeyEmpty and
Page 137 and 138:
labcurve 137 lwd col. col transpare
Page 139 and 140:
labcurve 139 Value key is called on
Page 141 and 142:
label 141 # Use the mouse to draw a
Page 143 and 144:
label 143 Arguments x Value self un
Page 145 and 146:
latex 145 Details A.ttributes of th
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latex 147 caption=NULL, caption.lot
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latex 149 cgroup n.cgroup rgroup n.
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latex 151 booktabs table.env here l
Page 153 and 154:
latex 153 PATH=paste(Sys.getenv("PA
Page 155 and 156:
ldBands 155 Usage Lan. Such stoppin
Page 157 and 158:
ldBands 157 Value A list of class "
Page 159 and 160:
makeNstr 159 Arguments struct depth
Page 161 and 162:
mChoice 161 Value For mApply, the r
Page 163 and 164:
mChoice 163 table a vector (mChoice
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mdb.get 165 # could also do: # summ
Page 167 and 168:
mgp.axis 167 Arguments side at see
Page 169 and 170:
mhgr 169 Author(s) Frank E Harrell
Page 171 and 172:
Misc 171 Author(s) Frank Harrell De
Page 173 and 174:
Misc 173 outerText(string, y, setAs
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mtitle 175 set.seed(1) whichClosest
Page 177 and 178:
na.detail.response 177 Usage na.del
Page 179 and 180:
na.keep 179 # age=NA age!=NA sex!=N
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panel.bpplot 181 Examples nstr(c("a
Page 183 and 184:
panel.bpplot 183 Author(s) Frank Ha
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pc1 185 See Also split Examples a
Page 187 and 188:
plsmo 187 plsmo Plot smoothed estim
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plsmo 189 type pch cex font set to
Page 191 and 192:
print.char.list 191 Value a list co
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print.char.matrix 193 print.char.ma
Page 195 and 196:
ps.slide 195 Arguments x txt any ob
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ps.slide 197 strip.blank =TRUE, lty
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ps.slide 199 Value ratio lref psref
Page 201 and 202:
corr 201 Details Certain functions
Page 203 and 204:
corr.cens 203 Usage rcorr.cens(x, S
Page 205 and 206:
corrp.cens 205 abline(h=.5, v=0, co
Page 207 and 208:
cspline.eval 207 rcspline.eval Rest
Page 209 and 210:
cspline.plot 209 nk knots show adj
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cspline.restate 211 after begin nbe
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edun 213 minfreq iterms pc pr For a
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equirePackage 215 Examples x
Page 217 and 218:
eShape 217 colvar base reps times t
Page 219 and 220:
legend 219 # d
Page 221 and 222:
m.boot 221 rm.boot Bootstrap Repeat
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m.boot 223 smoother xlab xlim ylim
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m.boot 225 Details Value ordered by
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m.boot 227 n
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samplesize.bin 229 Description Give
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sasxport.get 231 Usage used, it is
Page 233 and 234:
Save 233 # output; # format d1 mmdd
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scat1d 235 jitter2.default for vect
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scat1d 237 lwd col y curve line wid
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scat1d 239 Details For scat1d the l
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score.binary 241 # datadensity.data
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sedit 243 substring2(text, first, l
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show.pch 245 x
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smean.sd 247 smean.sd Compute Summa
Page 249 and 250:
somers2 249 Arguments a b tol a squ
Page 251 and 252:
spower 251 Usage The Weibull2 funct
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spower 253 Value spower returns the
Page 255 and 256:
spss.get 255 set.seed(211) spower(r
Page 257 and 258:
stata.get 257 Arguments x an unquot
Page 259 and 260:
store 259 store Store an Object Per
Page 261 and 262:
string.break.line 261 Value rows co
Page 263 and 264:
subplot 263 subplot Embed a new plo
Page 265 and 266:
summarize 265 Usage summarize store
Page 267 and 268:
summarize 267 dfr
Page 269 and 270:
summary.formula 269 summary.formula
Page 271 and 272:
summary.formula 271 rowlabel = '',
Page 273 and 274:
summary.formula 273 overall continu
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summary.formula 275 dotfont font fo
Page 277 and 278:
summary.formula 277 subtitles capti
Page 279 and 280:
summary.formula 279 bpplt() # annot
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summary.formula 281 y
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symbol.freq 283 summary(age ~ stage
Page 285 and 286:
t.test.cluster 285 Side Effects exe
Page 287 and 288:
transace 287 against the lowest lev
Page 289 and 290:
transace 289 categorical binary pl
Page 291 and 292:
transace 291 Details Value As trans
Page 293 and 294:
transace 293 newdat
Page 295 and 296:
transcan 295 values of the target v
Page 297 and 298:
transcan 297 ## S3 method for class
Page 299 and 300:
transcan 299 impcat mincut inverse
Page 301 and 302:
transcan 301 rhsImp Set to ‘"rand
Page 303 and 304:
transcan 303 freq aty a vector of f
Page 305 and 306:
transcan 305 categorical asis coef
Page 307 and 308:
transcan 307 blood.pressure=60:260,
Page 309 and 310:
translate 309 x[1:500]
Page 311 and 312:
units 311 Value An object of class
Page 313 and 314:
upData 313 The dataframeReduce func
Page 315 and 316:
upData 315 fracmiss maxlevels minpr
Page 317 and 318:
varclus 317 For valueTag
Page 319 and 320:
varclus 319 df s similarity type me
Page 321 and 322:
varclus 321 description, and naplot
Page 323 and 324:
wtd.stats 323 Usage expand x by the
Page 325 and 326:
wtd.stats 325 Author(s) Frank Harre
Page 327 and 328:
xYplot 327 xYplot xyplot and dotplo
Page 329 and 330:
xYplot 329 probs=c(.5,.25,.75), nx=
Page 331 and 332:
xYplot 331 Details Value minor.tick
Page 333 and 334:
xYplot 333 xYplot(Cbind(y,lower,upp
Page 335 and 336:
yearDays 335 setTrellis() # blank c
Page 337 and 338:
Index ∗Topic IO csv.get, 40 getZi
Page 339 and 340:
INDEX 339 ∗Topic iplot labcurve,
Page 341 and 342:
INDEX 341 (summary.formula), 266 [.
Page 343 and 344:
INDEX 343 is.discrete (discrete), 6
Page 345 and 346:
INDEX 345 print.dvi (latex), 142 pr
Page 347:
INDEX 347 units
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