Bioinformatics Slides (PDF) - Genomics & Medicine - Stanford ...

More documents

Recommendations

Info

pFAM at Sanger Center (UK)http://pfam.sanger.ac.uk/
pFAM at Sanger Center (UK)http://pfam.sanger.ac.uk/
Page 1 and 2:
BioinformaticsGenomics& Medicinehtt
Page 3 and 4:
Computational Goals of Bioinformati
Page 5 and 6:
Central Paradigm of MedicineDNA RNA
Page 9 and 10:
Soybean Leghemoglobin andSperm Whal
Page 11 and 12:
Challenges Understanding Genetic In
Page 13 and 14:
Dayhoff’s PAM 250Amino Acid Repla
Page 15 and 16:
Discovering Function from Protein S
Page 17 and 18:
A Typical Motif:Zinc Finger DNA Bin
Page 19 and 20:
Page 21 and 22:
Position-Specifc Scoring Matrix for
Page 23 and 24:
Blocks or Finger Prints fromMultipl
Page 25 and 26:
Hidden Markov Models fromMultiple S
Page 27 and 28:
Data Mining:The Seach for Buried Tr
Page 29 and 30:
PROSITE Patternshttp://expasy.org/p
Page 31 and 32:
Expasy Bioinformatics Resource Port
Page 33 and 34:
UniProt Knowledge Basehttp://www.un
Page 35 and 36:
UniProt Human Opsin Advanced Search
Page 37 and 38:
UniProt Human Opsin OPN1MW Entryhtt
Page 39 and 40:
Blast UniProt Human OPN1MW Resultsh
Page 41 and 42:
NCBI BLAST Home Pagehttp://blast.nc
Page 43 and 44:
Page 45 and 46:
Entrez Gene search for Colorblindne
Page 47 and 48:
Entrez Gene search for Opsins
Page 49 and 50:
BLAST Similarity Searchhttp://www.n
Page 51 and 52:
Paste Sequence, Choose SwissProt Da
Page 53 and 54:
BLAST Conserved Domain Output
Page 55 and 56:
Most Signifcant Similarity Hits
Page 57 and 58:
Bovine Blue Opsin Similarity
Page 59 and 60: Evaluation of ProflesNegative Prote
Page 61 and 62: MyHits Local Motifs Searchhttp://my
Page 63 and 64: MyHits Local Motifs Searchhttp://my
Page 65 and 66: MyHits Local Motif Hitshttp://myhit
Page 67 and 68: MyHits Local Motifs Hist (Cont.)
Page 69 and 70: InterProhttp://www.ebi.ac.uk/interp
Page 71 and 72: InterPro Scanhttp://www.ebi.ac.uk/T
Page 73 and 74: InterPro Scan Resultshttp://www.ebi
Page 75 and 76: GO: Gene Ontology Databasehttp://ww
Page 77 and 78: GO: Gene Ontology for Opsin OPN1MWh
Page 79 and 80: GO: Annotations for OPN1MWhttp://ww
Page 81 and 82: GO: Gene Ontology Terms for OPN1MWh
Page 83 and 84: GO: Gene Ontology GCPR Termhttp://w
Page 85 and 86: Bioinformatics Homeworkhttp://bioch
Page 87 and 88: Statistical vs. Biological Signifca
Page 89 and 90: Hidden Markov Models fromMultiple S
Page 91 and 92: Structure of 5’ CAP© Michael W.
Page 93 and 94: Intron Splicing Mechanism© Michael
Page 95 and 96: GENSCAN Gene Modelhttp://genes.mit.
Page 97 and 98: ESTs, Full Length cDNAUniGene & Ref
Page 99 and 100: HiddenMarkov modelsof genestructure
Page 101 and 102: Genomics, Bioinformatics &Computati
Page 103 and 104: Genomics, Bioinformatics &Computati
Page 105 and 106: Hidden Markov Models (after Haussle
Page 107 and 108: pFAM at Sanger Center (UK)http://pf
Page 109: pFAM at Sanger Center (UK)http://pf
show all

Bioinformatics Slides (PDF) - Genomics & Medicine - Stanford ...

Create successful ePaper yourself

Delete template?

Save as template?