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Next-Generation Sequencing: From Basic Research to Diagnostics ...

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18. Smith AD, Xuan Z, Zhang MQ. Using quality scores and longer reads improvesaccuracy of Solexa read mapping. BMC bioinformatics 2008;9:128.19. Rougemont J, Amzallag A, Iseli C, Farinelli L, Xenarios I, Naef F. Probabilisticbase calling of Solexa sequencing data. BMC bioinformatics 2008;9:431.20. Durfee T, Nelson R, Baldwin S, Plunkett G, 3rd, Burland V, Mau B, et al. Thecomplete genome sequence of Escherichia coli DH10B: insights in<strong>to</strong> the biologyof a labora<strong>to</strong>ry workhorse. J Bacteriol 2008;190:2597-606.21. Jiang H, Wong WH. SeqMap : mapping massive amount of oligonucleotides <strong>to</strong>the genome. Bioinformatics (Oxford, England) 2008.22. Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-shortread data sets from high-throughput DNA sequencing. Nucleic acids research2008;36:e105.23. Sundquist A, Ronaghi M, Tang H, Pevzner P, Batzoglou S. Whole-genomesequencing and assembly with high-throughput, short-read technologies. PLoSONE 2007;2:e484.24. Malhis N, Butterfield YS, Ester M, Jones SJ. Slider--maximum use of probabilityinformation for alignment of short sequence reads and SNP detection.Bioinformatics (Oxford, England) 2009;25:6-13.25. Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignmentprogram. Bioinformatics (Oxford, England) 2008;24:713-4.26. Ning Z, Cox AJ, Mullikin JC. SSAHA: a fast search method for large DNAdatabases. Genome Res 2001;11:1725-9.27. Warren RL, Sut<strong>to</strong>n GG, Jones SJ, Holt RA. Assembling millions of short DNAsequences using SSAKE. Bioinformatics (Oxford, England) 2007;23:500-1.28. Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER,et al. Extending assembly of short DNA sequences <strong>to</strong> handle error. Bioinformatics(Oxford, England) 2007;23:2942-4.29. Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly usingde Bruijn graphs. Genome Res 2008;18:821-9.

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