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For more information about the <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> <strong>Health</strong> <strong>Science</strong> <strong>Center</strong>, visit www.utmem.edu.<br />

This brochure is a joint project <strong>of</strong> <strong>The</strong> <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> <strong>Health</strong> <strong>Science</strong>s <strong>Center</strong> and <strong>The</strong> <strong>University</strong> <strong>of</strong> Memphis.<br />

This brochure was organized by the UT <strong>Health</strong> <strong>Science</strong> <strong>Center</strong> Offi ce <strong>of</strong> the Vice Chancellor for Research and<br />

produced by the UTHSC Communications and Marketing Department.<br />

<strong>The</strong> <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> is an EEO/AA/ Title VI/Title IX/Section 504/ADA/ADEA institution in the provision <strong>of</strong> its education<br />

and employment programs and services.<br />

E070401-009-07


Table <strong>of</strong> Contents<br />

Biomedical Instrumentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2<br />

Comparative Medicine and Laboratory Animal Care Unit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3<br />

Drosophila Core . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3<br />

Flow Cytometry and Cell Sorting Facility . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4<br />

Genomics and Bioinformatics Cores . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6<br />

Imtek MicroCat/SPECT System . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7<br />

<strong>University</strong> <strong>of</strong> Memphis<br />

Integrated Microscopy <strong>Center</strong>, Departments <strong>of</strong> Physics, Biomedical Engineering and<br />

W. Harry Feinstone <strong>Center</strong> for Genomic Research and Bioinformatics . . . . . . . . . . . . . . . . . . . . . 8<br />

Laser Capture Microdissection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11<br />

Mass Spectrometry Core Laboratory . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12<br />

Molecular Resource <strong>Center</strong> . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13<br />

Neuroscience Imaging . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15<br />

Public Parking at UTHSC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16<br />

1


2<br />

Biomedical Instrumentation<br />

S<br />

ince 1948, the Biomedical Instrumentation (BMI)<br />

team at the <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> campus in<br />

Memphis has provided a diverse array <strong>of</strong> services<br />

to customers both inside and outside <strong>of</strong> the<br />

<strong>University</strong>. Over the years, the BMI team has served thousands<br />

<strong>of</strong> customers in the public and private<br />

sector throughout the Mid-South with<br />

services that include: Computer Repair,<br />

Electronic Fabrication, Mechanical<br />

Design and Fabrication, Equipment<br />

Design and Repair, Rehabilitation<br />

Engineering Services, and Microscope<br />

Repair.<br />

BMI has built a solid reputation for<br />

timeliness, expertise, value and<br />

reasonable pricing. <strong>The</strong> team produces<br />

high quality work at costs that are<br />

consistently below most market rates.<br />

In addition, their customer service<br />

orientation and in-depth knowledge allow<br />

them to generate innovative solutions that<br />

serve the clients’ best interests.<br />

Computer Repair<br />

� Certifi ed as authorized service<br />

center for Dell, Gateway and Apple<br />

computers<br />

� Services other brands <strong>of</strong> computers,<br />

printers and peripherals<br />

� Performs system, disk drive and<br />

memory upgrades<br />

� Executes new equipment setup and<br />

checkout and can relocate existing<br />

equipment<br />

Mechanical Design and Fabrication<br />

� CAD/CAM<br />

� Can custom design work for<br />

researchers<br />

� Experienced as a small-scale producer<br />

<strong>of</strong> parts<br />

� Has 5th Axis milling capabilities<br />

� Offers complete machine shop<br />

services<br />

� Three CNC milling machines<br />

� Performs welding, brazing and<br />

soldering – aluminum, stainless steel<br />

� Utilizes plastic welding equipment for PVC and<br />

polyethylene<br />

� Provides relocation <strong>of</strong> delicate and expensive equipment<br />

Laboratory Equipment Repair<br />

� Repairs most manufacturers’<br />

equipment<br />

� Provides consultation, calibration<br />

and verifi cation <strong>of</strong> system<br />

parameters<br />

� Offers preventive maintenance<br />

� Performs new equipment setup and<br />

checkout<br />

Rehabilitation Engineering<br />

Services<br />

� Installs computer hardware<br />

adaptations<br />

� Performs s<strong>of</strong>tware adaptations<br />

� Executes computer repair<br />

� Provides custom fabrication services<br />

� Offers experienced counselors to<br />

assist clients with technology<br />

consultations<br />

Microscope Repair<br />

� Provides cleaning service and repair<br />

� Maintains an available stock <strong>of</strong><br />

replacement lamps<br />

<strong>The</strong> BMI team’s expertise, gleaned from<br />

years <strong>of</strong> practical experience, result in<br />

real savings for customers. <strong>The</strong> team can<br />

extend the life <strong>of</strong> existing equipment<br />

through repair rather than replacement.<br />

For additional information contact:<br />

Biomedical Instrumentation<br />

822 Beale Street<br />

Beale Building, Room 141<br />

Memphis, TN 38163<br />

(901) 448-5652<br />

(901) 448-5337 (fax)<br />

instrument@utmem.edu<br />

www.utmem.edu/BMI


<strong>The</strong> Department <strong>of</strong> Comparative Medicine and Laboratory<br />

Animal Care Unit provides suitable housing facilities, animal<br />

husbandry services, and research technical services for<br />

animals used in biomedical research. <strong>The</strong> program is overseen<br />

by veterinarians who are board certifi ed in laboratory animal<br />

medicine who provide veterinary and diagnostic services,<br />

personnel training and expertise in laboratory animal research,<br />

surgery, and model development.<br />

<strong>The</strong> Molecular Resource <strong>Center</strong> is proud to announce the<br />

Drosophila melanogaster transgenic core facility (DTC) in the<br />

department <strong>of</strong> Neurology at the <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> <strong>Health</strong><br />

<strong>Science</strong> <strong>Center</strong>. This facility will be the fi rst <strong>of</strong> its kind in the<br />

Memphis area and will further enhance genetic approaches<br />

to translational research at UTHSC. <strong>The</strong> purpose <strong>of</strong> the<br />

Drosophila Transgenic Core (DTC) is to encourage<br />

investigator’s to utilize the genetic screening tools in Drosophila<br />

to quickly identify genetic pathways or individual genes related<br />

to their disease gene <strong>of</strong> interest. <strong>The</strong> primary tools <strong>of</strong> the<br />

DTC will be the construction <strong>of</strong> transgenic Drosophila lines<br />

containing the investigator’s gene <strong>of</strong> interest under the<br />

control <strong>of</strong> the yeast upstream activator sequence (UAS). We<br />

can assist these investigators in generating visible phenotypes in<br />

the eye, wing, larvae or other tissues using various GAL4<br />

drivers maintained in the lab. Using the Drosophila deletion kits<br />

Comparative Medicine and Laboratory<br />

Animal Care Unit<br />

For additional information contact:<br />

Timothy Mandrell, DVM, DACLAM<br />

Pr<strong>of</strong>essor and Chair<br />

Comparative Medicine<br />

(901) 448-5656<br />

tmandrell@utmem.edu<br />

www.utmem.edu/research/LACU<br />

Drosophila Core<br />

(both Bloomington and DrosDel collections) we will help<br />

train postdocs or graduate students from the investigator’s<br />

laboratory to screen for potential suppressors or enhancers <strong>of</strong><br />

the phenotypes generated. Additional projects can also be<br />

performed on a case-by-case basis, such as the creation <strong>of</strong> lines<br />

for proteomic analysis, single neuron mutation analysis or<br />

analysis <strong>of</strong> mutants affecting the nervous system.<br />

For additional information contact:<br />

Larry Reiter, Ph.D.<br />

Neurology<br />

Room 431 Johnson<br />

(901) 448-2635 � (901) 448-6199 (alternate)<br />

lreiter@utmem.edu<br />

http://curlyo.utmem.edu<br />

3


4<br />

Flow Cytometry and Cell Sorting Facility<br />

T<br />

he Laboratory provides access to state-<strong>of</strong>-the-art<br />

analytical fl ow cytometry and cell sorting for<br />

UTHSC and Memphis area researchers. <strong>The</strong><br />

instruments available are a BD Biosciences<br />

FACSAria Cell Sorter, a BD Biosciences LSR II Flow Cytometer,<br />

and a BD Biosciences FACSCalibur Flow Cytometer.<br />

Who<br />

<strong>The</strong> Administrative/Faculty Director <strong>of</strong> the Laboratory is<br />

Dr. Tony Marion, Department <strong>of</strong> Molecular <strong>Science</strong>s. <strong>The</strong><br />

Director <strong>of</strong> Operations is Dan Rosson, Ph.D. Dr. Rosson is the<br />

contact person for access and scheduling <strong>of</strong> services provided<br />

by the laboratory.<br />

Where<br />

<strong>The</strong> facilities are located in Rm. 214,<br />

Molecular <strong>Science</strong>s Building, 858<br />

Madison and Rm. 146, <strong>The</strong> Cancer<br />

Research Building, 19 South Manassas,<br />

both within the UTHSC campus. <strong>The</strong><br />

LSR II fl ow cytometer and FACSAria cell<br />

sorter are in MSB214. <strong>The</strong> FACSCalibur<br />

fl ow cytometer is in Rm. 146, Cancer<br />

Research Building.<br />

How<br />

Individuals wishing to schedule<br />

training, use <strong>of</strong> either <strong>of</strong> the fl ow<br />

cytometers, operator-assisted fl ow<br />

cytometry, or cell sorting should contact<br />

Dr. Rosson, MSB214, 448-4279,<br />

drosson@utmem.edu. Researchers may<br />

choose to collect fl ow cytometry data<br />

themselves on either the FACSCalibur<br />

or LSR II. Only operator-assisted fl ow<br />

cytometry and cell sorting is accessible with the FACSAria.<br />

Users <strong>of</strong> the FACSCalibur and the LSR II must fi rst complete<br />

a two-hour training course with Dr. Rosson or provide<br />

documented evidence <strong>of</strong> training and complete familiarity with<br />

the relevant instrument’s operation. Training, access to the fl ow<br />

cytometers, and scheduling for cell sorting or operator-assisted<br />

analysis requires an account number to which all charges may<br />

be submitted for payment.<br />

When<br />

Cell sorting and fl ow cytometry services and facilities are<br />

available Monday through Friday, 9:00 a.m. – 5:00 p.m. and at<br />

other times by special request.<br />

Flow cytometric analyses available:<br />

� Differentiation <strong>of</strong> relative cell size and complexity for<br />

eukaryotic and prokaryotic cells<br />

� Simultaneous detection and quantifi cation <strong>of</strong> expression<br />

<strong>of</strong> up to 11 cell surface and/or intracellular molecules with<br />

fl urophore-labeled antibodies<br />

� Ca2+ fl ux measurement among cell subpopulations<br />

defi ned by multiple cell-surface markers<br />

� Detection and quantifi cation <strong>of</strong> GFP-labeled protein<br />

expression<br />

� Ca2+ fl ux during cell signaling among cell subpopulations<br />

defi ned by cell surface markers<br />

� DNA quantifi cation and cell cycle analysis<br />

� Detection and quantifi cation <strong>of</strong><br />

apoptosis<br />

� High Throughput Screening (HTS)<br />

<strong>of</strong> cells or fl urophore-labeled beads<br />

for the detection <strong>of</strong> cytokines or<br />

cell signaling phosphoproteins, i.e.<br />

BD Cytometric Bead Array® (CBA)<br />

Cell sorting services available:<br />

� High-speed sorting <strong>of</strong> cells<br />

identifi ed with up to 12 cell surface<br />

and/or intracellular fl uorescent<br />

markers into four or fewer defi ned<br />

subpopulations<br />

� Detection and high-speed sorting<br />

<strong>of</strong> bacteria or eukaryotic subcellular<br />

particles<br />

� Sorting into microwell plates<br />

� Single-cell deposition into microwell<br />

plates or onto microscope slides<br />

Flow Cytometry Facility<br />

<strong>The</strong> fl ow cytometry facility is contained and maintained within<br />

the Department <strong>of</strong> Molecular <strong>Science</strong>s, MSB214, and the<br />

Cancer Research Building, Rm. 146. <strong>The</strong> facility includes two<br />

analytical fl ow cytometers and a cell sorter. <strong>The</strong> facility<br />

functions as a core laboratory accessible to all PIs and research<br />

laboratories at UTHSC as well as other institutions and<br />

companies in the Memphis area and is operated on a fee-forservice<br />

basis. <strong>The</strong> facility is directed by Dr. Tony Marion,<br />

Pr<strong>of</strong>essor, Department <strong>of</strong> Molecular <strong>Science</strong>s and has a fulltime,<br />

highly trained operator, Dr. Dan Rosson. Dr. Rosson<br />

has many years <strong>of</strong> training and expertise in cell biology,<br />

particularly cancer cell biology, and fl ow cytometry. Both Drs.


Rosson and Marion are available to all users for help in<br />

designing and implementing protocols to implement fl ow<br />

cytometry and cell sorting within their research projects.<br />

Cell Sorter:<br />

FACSAria Special Order System<br />

(BD Biosciences)<br />

<strong>The</strong> cell sorter is equipped with four lasers with 12 fl uorescence<br />

detectors, in addition to FSC and SSC PMTs. <strong>The</strong> 0-100 mW<br />

488 nm blue diode laser is equipped with fi ve fl uorescence<br />

detectors and a SSC detector in an octagon confi guration.<br />

This laser is fi ltered for detection <strong>of</strong> FITC, PE, PerCP-Cy5.5,<br />

PE-TxRd, and PE-Cy7. <strong>The</strong> 30 mW 638 nm red diode laser<br />

is equipped with three fl uorescence detectors in a trigon<br />

confi guration, and is fi ltered for detection <strong>of</strong> APC, APC-Cy7,<br />

and Alexa700. <strong>The</strong> 50 mW<br />

405 nm violet diode laser<br />

has two fl uorescence<br />

detectors in a trigon<br />

confi guration, and is fi ltered<br />

for detection <strong>of</strong> Pacifi c Blue/<br />

Cascade Blue/Alexa405 and<br />

AmCyan/Pacifi c Orange/<br />

Alexa430. <strong>The</strong> 20 mW<br />

355 nm solid-state UV<br />

laser has two fl uorescence<br />

detectors in an octagon<br />

confi guration, and has<br />

upgrade capacity for Qdots.<br />

Detection <strong>of</strong> Hoechst,<br />

Indo-1 (Ca-bound and<br />

unbound), and DAPI can<br />

be accomplished using<br />

this laser. FSC detection<br />

is selectable between PMT<br />

(for increased sensitivity<br />

and detection <strong>of</strong> subcellular<br />

particles and bacteria < 0.2 micrometer) and diode (for<br />

eukaryotic cells). <strong>The</strong> instrument has two-and four-way sort<br />

capacity (into tubes or microtubes) with sort rates <strong>of</strong> 22,000<br />

events/sec in purity sort mode with predicted recovery <strong>of</strong> 80%<br />

and 98% purity. This sort rate allows for sorting the entire<br />

mononuclear cell population from a single mouse spleen in<br />

approximately 1 hour.<br />

<strong>The</strong> unit is also specially equipped with:<br />

� temperature controlled sample injection and cell<br />

collection chambers<br />

� biosafety level-2 aerosol containment (for sorting<br />

infectious samples)<br />

� automated cell deposition (including single cell) into<br />

microwell plates or onto microscope slides.<br />

Flow Cytometer:<br />

LSR II Special Option Flow Cytometer<br />

(BD Biosciences)<br />

<strong>The</strong> LSR II fl ow cytometer is equipped with four lasers with<br />

eleven fl uorescence detectors, in addition to FSC and SSC<br />

PMTs. <strong>The</strong> 22 mW 488 nm blue laser is equipped with four<br />

fl uorescence detectors and a SSC PMT, in an octagon<br />

confi guration, and is fi ltered for detection <strong>of</strong> FITC, PE,<br />

PerCP-Cy5.5, PE-TxRd, and PE-Cy7. <strong>The</strong> 20 mW 638 nm red<br />

laser has three fl uorescence detectors (in a trigon confi guration)<br />

which are capable <strong>of</strong> detecting APC, APC-Cy7, and Alexa700.<br />

<strong>The</strong> 22 mW 405 nm violet laser has two fl uorescence detectors<br />

(in a trigon confi guration), that have capacity to detect Pacifi c<br />

Blue/Cascade blue/Alexa405, and AmCyan/Pacifi c Orange/<br />

Alexa430. <strong>The</strong> 60 mW 355 nm solid-state UV laser has two<br />

fl uorescence detectors (in a<br />

trigon confi guration),<br />

which can detect Hoechst,<br />

Indo-1 (Ca-bound and<br />

unbound) for Ca2+-fl ux<br />

measurements, and DAPI.<br />

This instrument is<br />

also equipped with a<br />

programmable HTS (high<br />

throughput screening<br />

device) for automated<br />

collection <strong>of</strong> data from 96-<br />

384 well microplates.<br />

Flow Cytometer:<br />

FACSCalibur (Sort)<br />

(BD Biosciences)<br />

<strong>The</strong> FACSCalibur fl ow<br />

cytometer is equipped with<br />

two lasers, a 488 nm blue<br />

and 635 nm red, and four<br />

fl uorescence detectors in<br />

addition to forward and side scatter. <strong>The</strong> instrument will be<br />

located in the recently completed Cancer Biology Building. This<br />

instrument has limited sorting capability but because <strong>of</strong> the<br />

relatively slow sort speed is used primarily for analysis.<br />

For additional information contact:<br />

Dan Rosson, Ph.D.<br />

Flow Cytometry<br />

Molecular <strong>Science</strong>s Building, Rm. 214<br />

858 Madison Ave.<br />

(901) 448-4279<br />

drosson@utmem.edu<br />

5


6<br />

Genomics and Bioinformatics Cores<br />

Transgenic/Knockout Core<br />

<strong>The</strong> transgenic/knockout facility at <strong>The</strong> <strong>University</strong> <strong>of</strong><br />

<strong>Tennessee</strong>, <strong>Health</strong> <strong>Science</strong> <strong>Center</strong>, is equipped with all the<br />

necessary hoods, incubators, microscopes, micro injectors<br />

and micromanipulators to produce embryonic stem cells and<br />

transgenic and knockout mice. <strong>The</strong> facility is in operation and<br />

producing KO and transgenic mice and also provides advice<br />

and expertise to interested faculty. <strong>The</strong> facility currently has<br />

one Ph.D.-level, full-time staff person that generates transgenic<br />

and KO/chimeric mice for the <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> <strong>Health</strong><br />

<strong>Science</strong> <strong>Center</strong>.<br />

For additional information contact:<br />

Ioannis Dragatsis, Ph.D., Director<br />

Physiology<br />

idragats@utmem.edu<br />

(901) 448-3615 � (901) 448-5822 (alternate)<br />

<strong>The</strong> DNA Discovery Core<br />

This Core has three elements:<br />

� Service: <strong>The</strong> core will provide genome screening and<br />

polymorphic detection for research and education in UT<br />

and other institutions in <strong>Tennessee</strong>. Meanwhile, the core<br />

will continue develop and modify protocols for faster<br />

processes and lower costs during services. <strong>The</strong> <strong>Center</strong> has<br />

purchased a SpectruMedix genetic analysis machine to aid<br />

in the detection <strong>of</strong> genetic abnormalities.<br />

� Research: <strong>The</strong> core serves as a resource for the<br />

development <strong>of</strong> research projects that involves in genetic<br />

mapping, fi ne mapping, genome screening, DNA<br />

sequencing, and positional cloning.<br />

� Education: <strong>The</strong> core will serve as an education and<br />

training base for genetic and genomic analyses. Technique<br />

training currently includes genomic analysis and genome<br />

comparison, genome screening, simple sequence repeat<br />

length polymorphism (SSLP) analysis, Single nucleotide<br />

polymorphism (SNP) detection, and DNA sequencing.<br />

For additional information contact:<br />

Weikuan Gu, Ph.D., Director<br />

Orthopaedic Surgery<br />

wgu@utmem.edu<br />

(901) 448-2259 � (901) 448-5880 (alternate)<br />

Mouse Resource Core for Cancer Genetics<br />

<strong>The</strong> aims <strong>of</strong> this Core include:<br />

� Maintain and distribute to our researchers a wide variety<br />

<strong>of</strong> common strains <strong>of</strong> mice that have been critical in<br />

cancer biology.<br />

� Generate novel mouse strains as part <strong>of</strong> the Complex<br />

Trait Consortium. <strong>The</strong>se lines will be distributed to the<br />

cancer biologist.<br />

� Generate new mutants in key genes known to be involved<br />

in cancer progression, surveillance, metastasis using novel<br />

methods developed at ORNL and UTHSC.<br />

� Core facilities for genotype verifi cation and quality<br />

assurance.<br />

� Core mouse bioinformatics module to allow investigators<br />

simple tools to track mouse breeding and use in<br />

experimental protocols.<br />

For additional information contact:<br />

Robert Williams, Ph.D., Director<br />

Anatomy and Neurobiology<br />

rwilliam@nb.utmem.edu<br />

(901) 448-7050 � (901) 448-5965 (alternate)<br />

Bioinformatics Core<br />

In addition to Dr. Cui, the Core’s faculty includes Julia Krushkal<br />

Ph.D. and Rongling Li, Ph.D. who have expertise in statistical<br />

genetics and genetic epidemiology. <strong>The</strong> Core is in the process <strong>of</strong><br />

buying a Linux Beowulf cluster with at least 32 Intel Pentium<br />

Xeon 2.4GMHz processors. This will provide the computational<br />

power to explore the core problems <strong>of</strong> Bioinformatics and<br />

Computational Biology like genetic network modeling; protein<br />

structure prediction and genome-wide DNA sequence analysis.<br />

Researchers will have access to expert help in the analysis <strong>of</strong><br />

regulatory networks from genome-wide gene expression data.<br />

A programmer and a systems administrator staff the Core.<br />

Drs. Krushkal and Li have developed and are teaching<br />

introductory and advanced courses in Bioinformatics. <strong>The</strong>se<br />

would be open to <strong>Center</strong> personnel.<br />

For additional information contact:<br />

Yan Cui, Ph.D., Director<br />

Molecular <strong>Science</strong>s<br />

ycui2@utmem.edu<br />

(901) 448-3240 � (901) 448-6150 (alternate)


Proteomics Core<br />

This core helps researchers identify protein expression patterns<br />

that are altered in development, growth, aging and disease.<br />

<strong>The</strong> <strong>Center</strong>, in conjunction with the College <strong>of</strong> Medicine, has<br />

invested in two state <strong>of</strong> the art mass spectrometers to assist in<br />

the identifi cation <strong>of</strong> protein expression, a workstation for the<br />

visualization <strong>of</strong> protein spots, s<strong>of</strong>tware for the determination<br />

<strong>of</strong> protein differences, and a robotics system for the excision<br />

and processing <strong>of</strong> proteins for mass spectroscopic analysis.<br />

Currently, the Laboratory for Protein Analysis and Proteomics<br />

is equipped with the following mass spectrometers: a Bruker<br />

Ultrafl ex matrix-assisted-laser-desorption/ionization-<br />

Time-<strong>of</strong>-Flight refl ector mass spectrometer (MALDI-ToFToF)<br />

and a Sciex API (Atmospheric Pressure Ionization) QStar DE<br />

electrospray mass spectrometer. <strong>The</strong> MALDI-ToFToF is the<br />

primary instrument for proteomics identifi cations from<br />

polyacrylamide.<br />

T<br />

he Imtek MicroCAT II scanner is an X-ray computed<br />

tomography system capable <strong>of</strong> performing<br />

non-invasive imaging studies <strong>of</strong> tissue specimens or<br />

rats or mice in vivo. Sequential scans over time can<br />

be done using the same animals<br />

thereby reducing the number<br />

needed per experiment. <strong>The</strong><br />

imaging system with a 60 kVp<br />

x-ray source and 1024 x<br />

1024-pixel CCD detector<br />

provides a 50 mm diameter x<br />

50 mm long cylindrical fi eld<br />

<strong>of</strong> view (mouse), or 100 mm<br />

diameter x 50 mm long FOV<br />

for rat studies, with 50 micron<br />

(10% MTF) reconstructed<br />

image resolution. This<br />

translates into a six-minute<br />

scan <strong>of</strong> a whole mouse. <strong>The</strong><br />

source can also be operated at<br />

a maximum voltage <strong>of</strong> 90kVp<br />

to provide a 10-micron focal<br />

spot. With this option, the<br />

scanner can be re-confi gured<br />

by the user to provide 6-10micron<br />

resolution (10% MTF)<br />

reconstructed images. Gantry includes a four-axis precision<br />

motion control system, vibration isolation, a fully interlocked<br />

FDA compliant x-ray cabinet, and a removable mouse/<br />

specimen bed. <strong>The</strong> system computer is a dual processor<br />

<strong>The</strong> Proteomics laboratory <strong>of</strong>fers customized support and<br />

advice for every individual investigator desiring access. <strong>The</strong><br />

format <strong>of</strong> the laboratory permits users to quickly become<br />

advanced and heavy users <strong>of</strong> proteomics in their research.<br />

This didactic and practical experience gained by investigators<br />

in the Proteomics laboratory ensures that protein mass<br />

spectrometry will be used effectively and accurately as a<br />

powerful research tool in the College <strong>of</strong> Medicine at the<br />

<strong>University</strong> <strong>of</strong> <strong>Tennessee</strong>, Memphis.<br />

For additional information contact:<br />

George Hilliard, Ph.D., Director<br />

Molecular <strong>Science</strong>s<br />

ghilliard@utmem.edu<br />

(901) 448-6779 � (901) 448-6150 (alternate)<br />

www.utmem.edu/proteomics<br />

Imtek MicroCat/SPECT System<br />

All microCAT systems can be confi gured with optional high<br />

resolution SPECT detector heads for multi-modality studies.<br />

With the optional variable focus x-ray source, images down to 15<br />

micron resolution can be acquired in vivo.<br />

2 GHz Pentium IV workstation with 1 GB RAM, >100 GB<br />

RAID storage and an ultra-high resolution fl at-panel display.<br />

Data acquisition, image reconstruction, and Amira TM<br />

(Indeed-S<strong>of</strong>tware GmbH) Advanced 3D Visualization and<br />

Volume Modeling s<strong>of</strong>tware<br />

packages are provided.<br />

System operation and scanning<br />

<strong>of</strong> specimens/animals is provided<br />

by trained personnel or user and<br />

s<strong>of</strong>tware analyses training can be<br />

arranged by appointment.<br />

<strong>The</strong> MicroCAT system<br />

confi guration includes a dualhead<br />

single photon emission<br />

tomography (SPECT) data<br />

acquisition system so monitoring<br />

and distribution <strong>of</strong> radiolabeled<br />

compounds can be superimposed<br />

on MicroCT scans. Micro-SPECT<br />

will enable three-dimensional<br />

cross-sectional imaging <strong>of</strong><br />

distribution <strong>of</strong> radiolabel in<br />

small laboratory animals or tissue<br />

specimens at a spatial resolution<br />

in the micron \range. This dual<br />

MicroCAT+ SPECT functionality provides high resolution,<br />

high sensitivity, in vivo imaging to detect and quantify<br />

anatomical and functional changes associated with disease<br />

progression, and evaluate therapeutic effi cacy.<br />

7


8<br />

Key Features:<br />

� Superior image quality due<br />

to low-noise CCD detectors<br />

� Unique capability to adjust<br />

x-ray source and detector<br />

positions for high resolution and<br />

Field <strong>of</strong> View (FOV)<br />

� Multiple options for high<br />

speed 3-D reconstruction<br />

� Optional high resolution SPECT<br />

detector for integrated SPECT/CT<br />

Representative Studies:<br />

� Skeletal biology and disease:<br />

provides accurate calibrated<br />

measures <strong>of</strong> bone mineral density<br />

(BMD) and other structural<br />

parameters, 3-D rendering <strong>of</strong><br />

trabecular architecture and bone/<br />

biomaterial interfaces.<br />

� Joint degeneration: characterizes<br />

anatomical changes in joint<br />

space, and density/architectural<br />

changes in subchondral bone,<br />

measurement <strong>of</strong> s<strong>of</strong>t tissue edema.<br />

� Oncology: measures solid tumor<br />

volume and quantify metastases;<br />

<strong>University</strong> <strong>of</strong> Memphis<br />

Integrated Microscopy <strong>Center</strong><br />

T<br />

he Integrated<br />

Microscopy <strong>Center</strong> is a<br />

fee-for-service facility<br />

on the <strong>University</strong> <strong>of</strong><br />

Memphis main campus since 1976.<br />

<strong>The</strong> facility houses a variety <strong>of</strong> light<br />

and electron microscopes and a<br />

highly trained staff.<br />

Available equipment:<br />

� FEI XL30 Environmental<br />

Scanning Electron Microscope<br />

with an EDAX energy dispersive<br />

X-ray system<br />

� JEOL JEM1200EX II<br />

transmission electron<br />

microscope with an AMT 2K<br />

differentiates normal tissues from<br />

tumors through analysis <strong>of</strong> vascularity.<br />

� Cardiovascular and respiratory<br />

disease: characterizes anatomical<br />

differences in tissue, organ, such as<br />

airway structures, vessel geometry, etc.<br />

� Functional imaging with integrated<br />

microCT/SPECT: provides insight into<br />

biologic processes in living animals by<br />

imaging the deposition <strong>of</strong> labeled<br />

antibodies or uptake <strong>of</strong> labeled<br />

molecules. <strong>The</strong> disease progression as<br />

well as therapeutic intervention can be<br />

studied in a single animal.<br />

For more information or to<br />

arrange an appointment,<br />

contact:<br />

Jinsong Huang, Ph.D.<br />

Orthopaedic Surgery<br />

(901) 523-8990 ext 6444 (Laboratory)<br />

(901) 647-7909 (Mobile)<br />

jhuang4@utmem.edu<br />

Bottom Mount CCD Camera<br />

� Nikon CI Confocal Laser<br />

Scanning microscope with three<br />

laser lines, refl ectance and a<br />

transmitted detector<br />

� Nikon E800 research microscope<br />

with a Nikon 12 million pixel<br />

camera<br />

� Digital Instrument NanoScope<br />

IIIa scanning probe microscope<br />

and a Digital Instrument Bioscope<br />

for cell imaging<br />

� Balzers BAF 301 Freeze Fracture<br />

Unit<br />

� Balzers FSU Freeze Substitution<br />

Unit


� Balzers HMP 010 High Pressure Freezer<br />

� Equipment for thinning metal for TEM<br />

Our technical staff is skilled in the operation <strong>of</strong> all <strong>of</strong> our<br />

equipment and in preparing the samples for you. We have made<br />

it a policy in the IM <strong>Center</strong> to be fl exible about client use <strong>of</strong> our<br />

equipment and are willing to train clients at their request.<br />

We have a complete TEM prep lab, which has several ultra<br />

microtomes, including one with cryo capabilities and a Lynx<br />

tissue processor. We can handle both research and clinical<br />

electron microscopy and are pr<strong>of</strong>i cient in negative staining<br />

techniques. Our research histology lab is set up to handle a<br />

variety <strong>of</strong> tissue types and give special handling for diffi cult<br />

specimens. We do both frozen and paraffi n samples. We also<br />

have protocols for immunohistochemistry.<br />

<strong>The</strong> <strong>University</strong> <strong>of</strong> Memphis also has other facilities on campus<br />

that <strong>of</strong>fer services. Equipment available on a fee-for-service<br />

basis from other departments.<br />

For additional information contact:<br />

Lou Boykins<br />

101 Life <strong>Science</strong> Bldg<br />

3774 Walker Ave<br />

Memphis TN 38152<br />

(901) 678-2034<br />

lboykins@memphis.edu<br />

http://imc.memphis.edu/<br />

Biomedical Engineering<br />

Eugene Eckstein<br />

(901) 678-3505 �Eckstein@memphis.edu<br />

� Triboscope nanoindenter – Measures hardness<br />

Ernö Lindner<br />

(901) 678-5641 � elindner@memphis.edu<br />

� EcoChemie Surface Plasmon Resonance ET ___ for<br />

protein adsorption<br />

� Asylum Research MFP-3D Atomic Force Microscope for<br />

high resolution <strong>of</strong> fl at surface<br />

Warren Haggard<br />

(901) 678-4346 � whaggrd1@memphis.edu<br />

� Abbott TDX (ET 328) – Antibiotic measurements<br />

(selected)<br />

Warren Haggard/ Joel Bumgardner<br />

� Varian Gel Permeation Chromatography ET 322 – MW<br />

measurements <strong>of</strong> polymers<br />

� Differential Scanning Calorimetry ET 316 – Tg & thermal<br />

properties<br />

� Instron Tensile Testing Machine ET 301A – Mech.<br />

Properties (900 lb max load) 9


10<br />

Physics Department<br />

Sanjay Mishra<br />

(901) 678-3115<br />

srmishra@memphis.edu<br />

� Bruker D8 Advance X-ray Diffractometer* – Analyze phase<br />

composition and structure <strong>of</strong> materials<br />

� DuPont 910 DSC** – Phase<br />

transition study <strong>of</strong> materials<br />

M. Shah Jahan<br />

(901) 678-2620<br />

mjahan@memphis.edu<br />

� Varian E4 ESR/EPR<br />

Spectrometer – Free radicals<br />

analyzer<br />

� Bruker EMX 300 ESR/EPR<br />

Spectrometer*** – Free<br />

radical analyzer<br />

� Varian Cary 5E UV-Vis-NIR<br />

Spectrophotometer –<br />

optical density, absorption,<br />

transmission, refl ection<br />

� <strong>The</strong>rmoluminescence<br />

(Harsaw-Bicron) – defects<br />

in solids, chemiluminescence,<br />

thermal activation<br />

energy, radiation dosimetry<br />

*<strong>The</strong> Bruker D8 Advance X-ray<br />

Diffractometer is the state <strong>of</strong> the art<br />

equipment to analyze phase,<br />

composition, and structure <strong>of</strong><br />

materials. <strong>The</strong> system is capable <strong>of</strong><br />

doing fast measurements on variety<br />

<strong>of</strong> materials such as metals, ceramic,<br />

organic materials, and thin fi lms.<br />

<strong>The</strong> system is equipped with a<br />

high temperature stage (Room<br />

temperature-1400C) and has<br />

powerful analysis s<strong>of</strong>tware.<br />

**DuPont 910 DSC: This Differential Scanning Calorimeter system is<br />

capable <strong>of</strong> performing phase transition study <strong>of</strong> materials especially<br />

polymers and metals. It has a dynamic temperature range <strong>of</strong> RT-600C.<br />

***Bruker EMX system is fully automated, high-sensitive, state-<strong>of</strong>-the-art<br />

free-radical analyzer<br />

W. Harry Feinstone <strong>Center</strong> for Genomic Research<br />

<strong>The</strong> W. Harry Feinstone <strong>Center</strong> for Genomic Research provides<br />

equipment and support for all Affymetrix products using the<br />

Scanner 3000 with 7G upgrade. Our technical staff is skilled<br />

in the operation <strong>of</strong> this equipment and in data management<br />

and analysis. Through consultation and collaboration we can<br />

provide you with methods development, study design, data<br />

acquisition and analysis, including production <strong>of</strong> fi gures for<br />

publication. GeneChip applications include RNA expression,<br />

splice variant detection, and Chip-on-Chip assays. In addition,<br />

100k and 500k SNP chips support analysis <strong>of</strong> chromosome<br />

structure and loss <strong>of</strong> heterozygosity, as well as, genetic<br />

association studies.<br />

<strong>University</strong> <strong>of</strong> Memphis<br />

Bionformatics<br />

<strong>The</strong> Bioinformatics Program<br />

at the <strong>University</strong> <strong>of</strong> Memphis<br />

(http://cas.memphis.edu/binf/)<br />

is composed <strong>of</strong> over a dozen<br />

faculty members with a wide<br />

range <strong>of</strong> research interests.<br />

<strong>The</strong> Program consists <strong>of</strong> four<br />

service units:<br />

� Genomic and proteomic<br />

design and analysis<br />

� Database design and<br />

implementation<br />

� Gene function and pathway<br />

analysis<br />

� Meta-analysis and<br />

integrative statistics<br />

Each unit is headed by a faculty<br />

member who supervises<br />

graduate students and staff who<br />

are available to collaborate with<br />

researchers in the community.<br />

<strong>The</strong> Bioinformatics <strong>Center</strong> has<br />

access to the High Performance<br />

Computing facility at the<br />

FedEx Institute <strong>of</strong> Technology<br />

(http://itd.memphis.edu/<br />

researchcomputing.htm). In<br />

addition, the <strong>Center</strong> supports<br />

many commercially available statistical and analytical s<strong>of</strong>tware<br />

packages as well as several in-house databases and<br />

bioinformatic tools.<br />

For more information contact:<br />

Thomas R. Sutter, Ph.D.<br />

3774 Walker Ave<br />

Memphis TN 38152<br />

(901) 678-8391<br />

tsutter@memphis.edu<br />

For parking information, visit www.memphis.edu and search for<br />

the Zach Curlin parking garage.


L<br />

aser Capture Microdissection (LCM) provides a<br />

rapid, reliable, one-step method to obtain pure<br />

populations <strong>of</strong> targeted cells from specifi c<br />

microscopic regions for subsequent analysis.<br />

LCM was developed to enable<br />

investigators and clinicians to perform<br />

tissue microdissection on a routine<br />

basis. <strong>The</strong>re are no limitations in the<br />

ability to amplify DNA or RNA from<br />

individual cells or cell clusters (e.g.,<br />

tumors) from tissue sections, blood<br />

smears, or cell cultures. LCM has been<br />

used to explore gene expression, loss<br />

<strong>of</strong> heterozygosity, micro-satellite<br />

instability, clonality and for<br />

proteomics.<br />

<strong>The</strong> Arcturus Pixcell II LCM at the<br />

UTHSC facility has major advantages<br />

compared to other instruments in that<br />

1) the laser never touches the tissue<br />

itself, thereby avoiding possible heat<br />

shock and damage, 2) cells are<br />

captured directly onto<br />

an optically transparent<br />

cap for reliable transfer<br />

<strong>of</strong> every sample to the a<br />

ppropriate assay tube, and<br />

3) the accuracy <strong>of</strong> each<br />

step <strong>of</strong> cell capture can<br />

be digitally documented<br />

by the accompanying<br />

archiving s<strong>of</strong>tware. <strong>The</strong><br />

PixCell II also has a<br />

fl uorescence system with<br />

fi lter cubes for blue (Ex<br />

455-495 nm/Em >510<br />

nm), green (Ex 503-547<br />

nm/Em >565 nm), and red<br />

(Ex 590-650 nm/Em >667<br />

nm) wavelengths. <strong>The</strong><br />

following fl uorophores<br />

have been shown to be<br />

compatible with LCM:<br />

Cy2, Cy3, Cy5; Alexa 488,<br />

532, 546, 568; FITC; Oregon Green; propidium iodide; TRITC;<br />

phycoerythrin; rhodamine; To-Pro-3; and, Texas Red.<br />

Laser Capture Microdissection<br />

Figure 1. Diagrammatic representation <strong>of</strong> laser<br />

capture microdissection steps. Reprinted from<br />

Arcturus 2002 Web site (www.arctur.com).<br />

Procedures<br />

Cells can only be captured from dehydrated tissue sections or<br />

cell samples centered on a glass slide.<br />

<strong>The</strong> proprietary CapSure, an optically transparent cap<br />

containing a thermoplastic membrane<br />

transfer fi lm, is placed on the slide and<br />

cells are dissected by the focal melting<br />

<strong>of</strong> the membrane through laser<br />

activation (fi g 1). This short, low<br />

power infrared laser pulse, with beam<br />

sizes <strong>of</strong> 7.5, 15 and 30 µm, is triggered<br />

with a push <strong>of</strong> a button on the joystick.<br />

At no time does the laser directly touch<br />

the tissue sample; therefore, neither the<br />

quality <strong>of</strong> nucleic acids and proteins<br />

within the sample nor cell morphology<br />

are compromised, and the surrounding<br />

tissue remains intact on the slide.<br />

<strong>The</strong> captured cells remain attached to<br />

the transfer fi lm surface on the<br />

CapSure cap, which is then placed<br />

directly into a microcentrifuge<br />

tube containing the<br />

user-identifi ed extraction<br />

buffer for specifi c assay(s).<br />

Publication quality,<br />

digitized images can be<br />

taken <strong>of</strong> the tissue section<br />

before and after LCM, as<br />

well as <strong>of</strong> the selected<br />

tissue retained on the<br />

CapSure cap, to document<br />

the specifi city <strong>of</strong> each<br />

sample (fi g. 2).<br />

Extraction <strong>of</strong> DNA has<br />

been demonstrated using<br />

both ethanol fi xed and<br />

formalin fi xed paraffi n<br />

embedded tissue; RNA can<br />

be recovered from fresh<br />

frozen tissue sections.<br />

Guidelines for amounts<br />

needed per sample for molecular analyses are: 10-20 cells from<br />

a 10-micron section has been shown to work for PCR; 50,000<br />

cells for 2-D gel a nalysis; and, 20,000 cells for a western blot.<br />

Figure 2. Digitized images <strong>of</strong> each step <strong>of</strong> laser capture microdissection. (A) Rat<br />

brain was fresh frozen and 7 µm cryosections were briefl y Nissl stained, then<br />

rapidly dehydrated and laser-captured. (B) Paraffi n-embedded rat kidney 10 µm<br />

sections were briefl y stained with H&E, then rapidly dehydrated and microdissected.<br />

<strong>The</strong> last panel for each tissue is an image <strong>of</strong> the captured neurons (A) or<br />

glomerulus (B) adhered to the polymer transfer fi lm on the cap.<br />

11


12<br />

Since slide preparation is the most critical component <strong>of</strong> successful<br />

laser capture, the Director <strong>of</strong> the LCM facility,<br />

Dr. Shannon Matta, will work closely with each investigator to<br />

develop optimal procedure(s) for tissue preparation specifi c to<br />

the sample. In addition, every scientist, physician or pathologist<br />

who wishes to use the LCM system must fi rst be trained and<br />

certifi ed by Dr. Matta.<br />

Mass Spectrometry Core Laboratory<br />

T<br />

he new UTHSC Mass Spectrometry Core<br />

Laboratory will: (a) provide to funded UTHSC<br />

investigators state-<strong>of</strong>-the-art analytical<br />

methodologies; (c) train UTHSC research<br />

personnel; and (d) promote biological mass<br />

spectrometry to the UTHSC research community and other<br />

institutions. <strong>The</strong> center <strong>of</strong> this new UTHSC Core is the Charles<br />

B. Stout Neuroscience Mass Spectrometry Laboratory. <strong>The</strong><br />

laboratory, headed by Dr. Dominic Desiderio, is an established<br />

university, national, and international mass spectrometry center<br />

that has conducted independent and collaborative research,<br />

and has provided mass<br />

spectrometry service to<br />

scientists at UTHSC and<br />

neighboring institutions for<br />

28 years. <strong>The</strong> Associate<br />

Directors are Dr. Giorgianni,<br />

Ph.D., Assistant Pr<strong>of</strong>essor in the<br />

Department <strong>of</strong> Neurology, and<br />

Sarka Beranova-Giorgianni,<br />

Ph.D., Assistant Pr<strong>of</strong>essor <strong>of</strong><br />

Pharmaceutical <strong>Science</strong>s. A<br />

Technologist with expertise in<br />

mass spectrometry will conduct<br />

protein identifi cation/<br />

characterization experiments<br />

that include mass spectrometry<br />

measurements, database searches, and data<br />

interpretation. This MS Core will provide identifi cation <strong>of</strong><br />

proteins from 2D gel spots or from bands from 1D gels via<br />

MS/MS and searches <strong>of</strong> protein sequence databases.<br />

Instrumentation<br />

� Matrix-assisted laser desorption/ionization (MALDI) linear<br />

trap mass spectrometer; MALDI-LTQ (<strong>The</strong>rmoelectron)<br />

� Liquid chromatography-nanoelectrospray linear trap mass<br />

spectrometer; LC-nanoESI-LTQ (<strong>The</strong>rmoelectron)<br />

For additional information, contact:<br />

Shannon Matta, Ph.D., Director<br />

Pharmacology<br />

(901) 448-2874 � (901) 448-6000 (alternate)<br />

smatta@utmem.edu<br />

www.utmem.edu/lcm<br />

LCM and the PixCell II instrument details are available on the<br />

Arcturus Pixcell II page – www.arctur.com/research_portal/ products/<br />

pixcell_main.htm<br />

� Liquid chromatography-nanoelectrospray ion trap mass<br />

spectrometer; LCQDeca (<strong>The</strong>rmoelectron)<br />

� Liquid chromatography-nanoelectrospray quadrupole<br />

time-<strong>of</strong>-fl ight (QTOF) mass spectrometer; Q-TOF2<br />

(Waters)<br />

� Matrix-assisted laser desorption/ionization time-<strong>of</strong>-fl ight<br />

(MALDI TOF) mass spectrometer (Applied Biosystems).<br />

This user-friendly instrument provides the molecular<br />

weight (MW) <strong>of</strong> individual tryptic peptides in an<br />

unseparated protein digest.<br />

Liquid chromatography<br />

Three nanoLC systems are<br />

interfaced with the mass<br />

spectrometers for online LC-<br />

MS/MS analyses: Surveyor<br />

nanoLC (<strong>The</strong>rmoelectron);<br />

FAMOS/SWITCHOS/Ultimate<br />

nanoLC (Dionex); and CapLC<br />

nanoLC (Waters). <strong>The</strong> Dionex<br />

system has multidimensional<br />

liquid chromatography<br />

(MDLC) capabilities.<br />

Bioinformatics<br />

Each mass spectrometer<br />

includes a computer for<br />

instrument control and data acquisition. In addition, there are<br />

four computers dedicated to database searches. Search engines<br />

for in-house database searches include two copies <strong>of</strong> SEQUEST<br />

Browser, and two copies <strong>of</strong> Bioworks 3.2. <strong>The</strong> Core will use<br />

free online bioinformatics resources such as MASCOT (free<br />

version), Expasy, and Scansite.<br />

<strong>The</strong> Core will provide support for currently funded<br />

UTHSC investigators through access to advanced MS<br />

instrumentation and expert assistance. <strong>The</strong> Core will help to


initiate new research projects that will be enabled by<br />

state-<strong>of</strong>-the-art MS technologies and expertise.<br />

<strong>The</strong> Core will train students, postdoctoral fellows, and residents<br />

in mass spectrometry. Drs. Desiderio and Beranova-Giorgianni<br />

teach a course on the Basic Principles <strong>of</strong> Mass Spectrometry<br />

in the Department <strong>of</strong> Molecular <strong>Science</strong>s, organize discussion<br />

groups, and present seminars to promote mass spectrometry<br />

and to attract new users.<br />

Molecular Resource <strong>Center</strong> Services<br />

� DNA Sequencing<br />

� Genetic Analysis/Genotyping<br />

� Phosphor-imaging<br />

� Real Time PCR<br />

� Confocal Microscopy<br />

� Cell Sorting<br />

� Microarray Facility<br />

� Fluorescence Microscopy<br />

� Primer Express S<strong>of</strong>tware<br />

DNA Sequencing<br />

<strong>The</strong> MRC currently has ABI PRISM<br />

310 and 3130xl Genetic Analyzers<br />

for DNA sequencing and fragment<br />

analysis. <strong>The</strong> 3130s have 16 capillaries<br />

that operate in parallel and are fully<br />

automated from sample loading to<br />

data analysis. We currently employ<br />

these two instruments for sequencing<br />

and genotyping. <strong>The</strong> 310 is a single<br />

capillary instrument that can support<br />

most gel-based assays. It is currently<br />

used for fragment analysis employing<br />

fl uorescent markers that precede the<br />

ones used with the 3130xl. As part <strong>of</strong><br />

our DNA sequencing services, we <strong>of</strong>fer<br />

plasmid miniprep purifi cation for<br />

sequencing only. Details on<br />

submission <strong>of</strong> transformed bacteria<br />

and costs can be obtained from MRC<br />

personnel.<br />

<strong>The</strong> MRC has an ABI PRISM 7700 Sequence Detection System<br />

for Real Time PCR. This instrument includes a built in 9600<br />

thermalcycler, a laser to induce fl uorescence and real-time<br />

detection s<strong>of</strong>tware. Some <strong>of</strong> the applications <strong>of</strong> the ABI PRISM<br />

Molecular Resource <strong>Center</strong><br />

ABI PRISM 3130xl Genetic Analyzer<br />

Light Cycler®480; Universal Probe Library<br />

For additional information, contact:<br />

Dominic M. Desiderio, Ph.D., Director<br />

Francesco Giorgianni, Ph.D., Associate Director<br />

Sarka Beranova-Giorgianni, Ph.D., Associate Director<br />

Neurology<br />

(901) 448-6199<br />

7700 include real-time quantitation, SNP detection, and +/-<br />

assays with internal positive control.<br />

<strong>The</strong> ABI Primer Express s<strong>of</strong>tware allows you to independently<br />

design and analyze oligo sequences for a variety <strong>of</strong> PCR and<br />

sequencing applications.<br />

Real Time PCR<br />

<strong>The</strong> LightCycler® 480 (LC480)<br />

Instrument is a rapid, thermal blockcycler<br />

with integrated real-time, online<br />

detection capabilities. Based on a<br />

comprehensive improvement <strong>of</strong> the<br />

Peltier-based block technology, the<br />

Instrument provides extraordinary<br />

well-to-well temperature homogeneity<br />

and maximized inter-well, inter-cycle<br />

reproducibility. <strong>The</strong> special arrangement<br />

<strong>of</strong> optical components in the<br />

LC480 Instrument ensures the uniform<br />

collection <strong>of</strong> signals across the<br />

plate and makes analysis independent<br />

<strong>of</strong> the sample position on the plate.<br />

<strong>The</strong> LightCycler® 480 System setup<br />

enables the use <strong>of</strong> all current probe<br />

formats (e.g., SYBR Green I,<br />

Hydrolysis Probes, HybProbe Probes)<br />

and provides the ideal solution for fast<br />

and precise qualitative or quantitative<br />

detection <strong>of</strong> nucleic acids, genotyping,<br />

and mutation analysis. <strong>The</strong> ability to<br />

freely combine fi ve excitation and six<br />

emission fi lters permits analysis <strong>of</strong> signals from multiple dyes<br />

(e.g., LightCycler® Red 610, 640, LightCycler® CYAN 500, FAM,<br />

VIC, HEX, Cy5, and Fluorescein) in monocolor as well as in<br />

multiplex assays.<br />

13


14<br />

<strong>The</strong> user-friendly LightCycler® 480 S<strong>of</strong>tware enables highly<br />

fl exible and extensive data analysis for different scientifi c needs.<br />

Based on the modular design <strong>of</strong> the s<strong>of</strong>tware, the user<br />

can customize the system by adding<br />

advanced analysis modules (e.g.,<br />

LightCycler® 480 Relative<br />

Quantifi cation S<strong>of</strong>tware, LightCycler®<br />

480 Genotyping S<strong>of</strong>tware) to the<br />

LightCycler® 480 Basic S<strong>of</strong>tware (run<br />

option, Tm calling option, absolute<br />

quantifi cation option).<br />

Phosphor-imaging<br />

<strong>The</strong> Molecular Dynamics Typhoon<br />

Phosphor-imager is capable <strong>of</strong><br />

scanning exposed storage phosphor<br />

screens, fl uorescent (532nm or 633nm<br />

excitation), and chemiluminescent<br />

samples. ImageQuant s<strong>of</strong>tware<br />

analysis tools can be used to<br />

perform area or volume quantitation<br />

on scanned images. DNA and protein<br />

fragments separated by electrophoresis<br />

can be analyzed using the fragment<br />

analysis s<strong>of</strong>tware.<br />

Fluorescence Microscope<br />

<strong>The</strong> Axiophot Photomicroscope is<br />

available for either transmitted light<br />

or fl uorescence detection on stained<br />

slides. Optronics Magnafi re s<strong>of</strong>tware<br />

can be used to capture and print<br />

images, using a digital camera, from<br />

bright fi eld monochrome (grayscale)<br />

images and color images as well as<br />

fl uorescent images.<br />

Microarray Production<br />

Production <strong>of</strong> microarrays is <strong>of</strong>fered<br />

DNA for the arrays can be produced<br />

as either amplifi ed cDNA clones or<br />

oligonucleotides and applied to glass<br />

substrates. Users must supply the appropriate<br />

cDNA clones or sequences for<br />

the oligonucleotides. S<strong>of</strong>tware is<br />

available to aid in the design <strong>of</strong> the appropriate<br />

oligonucleotides. Currently, a mouse 15K array from cDNA<br />

clones supplied by the National Institute <strong>of</strong> Aging is available.<br />

Agilent Bioanalyzer<br />

<strong>The</strong> Bioanalyzer system is an automated, computer controlled,<br />

integrated analyzer capable <strong>of</strong> sizing and concentration<br />

Zeiss Axiophot microscope<br />

Agilent Bioanalyer<br />

Liquid Handling Robot<br />

determinations <strong>of</strong> nucleic acids and proteins. Sample<br />

preparations include PCR and RT-PCR fragments, restriction<br />

digests, total RNA and mRNA, cell lysates, column fractions<br />

and purifi ed proteins.<br />

Liquid Handling Robot<br />

<strong>The</strong> MRC has excess capacity for all<br />

<strong>of</strong> our services. A liquid handling<br />

robot (Perkin Elmer Multiprobe HT<br />

EX) is available to scale up assays<br />

as necessary.<br />

Other MRC Services<br />

To better serve the needs <strong>of</strong> the research<br />

community, the MRC has contracted<br />

services with the following vendors:<br />

� Peptide Synthesis<br />

Biomolecules Midwest<br />

Dr. John Gorka<br />

1-877-939-9676<br />

� Protein Sequencing<br />

Midwest Analytical<br />

Dr. David McCourt<br />

1-800-481-0790<br />

Felicia Waller<br />

(Phosphoimaging & Digital Microscopy)<br />

fwaller@utmem.edu<br />

Molecular Resource <strong>Center</strong><br />

19 S. Manassas 3rd Floor<br />

Memphis, TN 38163<br />

(901) 448-6191 � (901) 448-8229 (fax)<br />

For more information on MRC,<br />

contact:<br />

William Taylor, Ph.D.<br />

Molecular Resource <strong>Center</strong><br />

wtaylor@utmem.edu<br />

Thomas Cunningham, Ph.D.<br />

(DNA Sequencing & Real Time PCR)<br />

tcunningham@utmem.edu


T<br />

he Neuroscience Imaging <strong>Center</strong> within the<br />

Neuroscience Institute/<strong>Center</strong> <strong>of</strong> Excellence,<br />

located on the 3rd fl oor <strong>of</strong> the Link Building at<br />

855 Monroe, <strong>of</strong>fers use <strong>of</strong> equipment and<br />

technical services in the areas <strong>of</strong> transmission electron<br />

microscopy, confocal microscopy, 3-dimensional neuron<br />

tracing and mapping, conventional light microscopy<br />

applications and tissue preparation to all investigators in the<br />

medical and research fi elds in the mid-south area.<br />

<strong>The</strong> JEOL 2000EX transmission electron microscope<br />

normally runs at 60kV, but can run up to 200kV to<br />

examine semi-thin sections. It is equipped with a highresolution<br />

monitor and Hamamatsu Orca HR digital camera,<br />

providing portable, digital images at high resolution, in several<br />

formats, obviating the need for fi lm and darkroom work.<br />

<strong>The</strong> MicrobrightField, Inc. Neurolucida s<strong>of</strong>tware allows<br />

3D reconstruction <strong>of</strong> neurons, serial reconstruction <strong>of</strong><br />

brain sections, and precise cell plotting <strong>of</strong> histological or<br />

vibrotomed serial sections, using a motorized stage with X, Y<br />

and Z encoders.<br />

<strong>The</strong> BioRad MRC 1024 confocal imaging system is equipped<br />

with a Krypton/Argon laser, creating three excitation lines<br />

co-aligned at 488 nm (blue), 568 nm (green), and 647 nm (far<br />

red), enabling the user to effectively employ double or triple<br />

labeling techniques, and with appropriate barrier fi lters, can<br />

minimize bleed-through. Refl ected light and transmitted light<br />

image capture is also available. Image fi les can be saved to CDs<br />

for portability. This system uses the upright Olympus BX50<br />

with objective lenses ranging from 2x to 100x, and a 20x water<br />

immersion lens.<br />

Technical assistance is available with over 35 years experience in<br />

light and transmission electron microscopy. This lab can<br />

process many types <strong>of</strong> tissue, tissue slices, tissue cultures, and<br />

pellets, embedding in Spurr’s resin, Epon, or Epon/Araldite<br />

blends, as well as LRWhite, utilizing a variety <strong>of</strong> embedment<br />

methods, such as Beem or gelatin capsules, fl at molds, and<br />

fl at embedment <strong>of</strong> tissue slices. Negative staining can be<br />

done as well.<br />

For information concerning scheduling and prices,<br />

contact:<br />

Kathy Troughton<br />

(901) 448-5976<br />

www.utmem.edu/neuroscience/imaging-center<br />

Neuroscience Imaging<br />

Immunogold localization <strong>of</strong> neurophysins in dense core granules <strong>of</strong><br />

vasopressin and oxytocin nerve terminals.<br />

Visualizing the spatial overlap <strong>of</strong> developing pathways in<br />

embryonic mouse brain using fl uorescent dyes and confocal laser<br />

scanning microscopy.<br />

15


16<br />

Public Parking Locations at the <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong><br />

<strong>The</strong>re are fi ve public parking lots on the UTHSC campus:<br />

outdoor lots O and V and indoor garages E, H and P.<br />

Directions<br />

O lot is the parking lot located on the south side <strong>of</strong> the Dunn<br />

Dental Building at 875 Union Ave. <strong>The</strong> parking lot is<br />

accessible from Union Avenue, X lot and T lot. In order to gain<br />

entrance to the parking lot, drivers must enter the gated lot by<br />

pulling a ticket from the parking booth that is monitored by a<br />

parking attendant from the hours <strong>of</strong> 9 a.m. until 5 p.m.<br />

V lot is a metered parking location at the corner <strong>of</strong> Madison<br />

and Manassas with a physical address <strong>of</strong> 780 Madison Ave. <strong>The</strong><br />

entrance to V lot is accessible from Manassas Street.<br />

E garage is located on the north side <strong>of</strong> the General Education<br />

Building, which is on the southeast corner <strong>of</strong> Dunlap and<br />

Madison. <strong>The</strong> physical address <strong>of</strong> E garage is 869 Madison Ave.<br />

<strong>The</strong> entrance to the garage is accessible from Madison Avenue.<br />

H garage is located on the east side <strong>of</strong> the Plaza Complex at<br />

930 Madison Ave. It is adjacent to the building. <strong>The</strong> garage has<br />

entrances from both Madison Avenue and Court Street.<br />

P garage is the parking garage adjacent to the Doctor’s Building<br />

located at 66 North Pauline. <strong>The</strong> entrance to the garage is<br />

accessible from Pauline Street.<br />

Metered Parking<br />

Public spaces adjacent to parking meters are located on:<br />

� the west side <strong>of</strong> the Student Alumni <strong>Center</strong>,<br />

� Manassas between Madison and Jefferson,<br />

� Dunlap across the street from the Hyman Administration<br />

Building.<br />

Map Buildings Legend<br />

4 740 Court Building D5<br />

34 910 Madison Building J6<br />

31 920 Madison Building J5<br />

35 930 Madison Building J6<br />

16 Alexander Bulding H6<br />

11 Beale Building G9<br />

3 Boling <strong>Center</strong> for C4<br />

Developmental Disabilities<br />

6 Cancer Research Bldg. D7<br />

30 Coleman College <strong>of</strong><br />

Medicine Bldg. J4<br />

24 Crowe Research Bldg. H8<br />

29 Docs Field Pavilion I11<br />

37 Doctors Offi ce Bldg L4<br />

17 Feurt Pharmacy G7<br />

Research Bldg<br />

15 GEB Garage H6<br />

14 General Education Bldg G6<br />

12 Goodman Family G11<br />

Residence Hall<br />

2 Hyde Engineering B4<br />

23 Hyman Administration G8<br />

18 Johnson Building G7<br />

19 Link Bulding H7<br />

32 Madison Garage K5<br />

33 Madison Place Building J5<br />

13 Molecular <strong>Science</strong>s Bldg G6<br />

21 Mooney Building H8<br />

22 Nash Addition I8<br />

25 Nash Research Bldg. I8<br />

36 Pauline Annex L4<br />

38 Pauline Garage L4<br />

1 Phi Chi Fraternity House B4<br />

28 Physical Plant Shops I10<br />

27 Purchasing and Physical I10<br />

Plant Building<br />

9 Randolph Hall E6<br />

7 Student <strong>Center</strong> Garage E5<br />

8 Student-Alumni <strong>Center</strong> F5<br />

10 Van Vleet Cancer <strong>Center</strong> F5<br />

5 Just Variety Building D5<br />

20 Wittenborg Anatomy H7<br />

1<br />

2<br />

3<br />

4<br />

5<br />

6<br />

7<br />

8<br />

9<br />

10<br />

11<br />

A B C D E F<br />

0 FEET<br />

0<br />

Union Avenue<br />

Jefferson Avenue<br />

MILES<br />

1<br />

2<br />

Madison Avenue<br />

Marshall Street<br />

500<br />

0.<br />

1<br />

Orleans Street<br />

Washington Ave.<br />

Adams Avenue<br />

3<br />

Monroe Avenue Extended<br />

Court Avenue<br />

© 2007 UTCSL<br />

This map may not be reproduced, copied, altered, or distributed by electronic or traditional means<br />

without permission <strong>of</strong> <strong>The</strong> <strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> Cartographic Services Laboratory.<br />

Custom versions can be generated by calling (865) 974-5348.<br />

Cartography by Will Fontanez, Director<br />

Forrest Park<br />

A B C D E F<br />

4<br />

<br />

5<br />

6<br />

Memphis an<br />

Shelby Coun<br />

<strong>Health</strong> Depart<br />

7<br />

Jefferson Avenu<br />

9<br />

Speech<br />

Bldg.<br />

8<br />

Union Avenue<br />

Walnut Street<br />

Manassas Street


<strong>Health</strong> <strong>Science</strong> <strong>Center</strong><br />

d<br />

ty<br />

ment<br />

e<br />

Dunlap Street<br />

10 10<br />

11 11<br />

Beale Street<br />

Dunlap Street<br />

12 12<br />

G H<br />

Mental <strong>Health</strong><br />

Institute, Memphis<br />

Washington Avenue<br />

LeBonheur Children’s<br />

Medical <strong>Center</strong><br />

14 14<br />

17 17<br />

18 18<br />

23 23<br />

13 13<br />

Linden Avenue<br />

15 15<br />

Monroe Avenue<br />

19 19 20 20<br />

26 26<br />

G H<br />

Madison Avenue<br />

16 16<br />

21 21<br />

24 24<br />

Adams Avenue<br />

Regional Medical <strong>Center</strong><br />

at Memphis<br />

Dunlap Street<br />

Hospital Street<br />

22 22<br />

25 25<br />

Beale Street<br />

29 29<br />

I J<br />

State<br />

Mental<br />

<strong>Health</strong><br />

Building<br />

Dobbs<br />

Research<br />

Institute<br />

28 28<br />

27 27<br />

31 31<br />

I J<br />

30 30<br />

33 33<br />

34 34 35 35<br />

Memphis<br />

Bioworks<br />

Foundation<br />

Memphis<br />

Bioworks<br />

Foundation<br />

East Street<br />

Poplar Avenue<br />

Mid-South<br />

Hospital<br />

Dudley Street<br />

32 32<br />

K L M N O P<br />

Regional<br />

Medical <strong>Center</strong><br />

Parking<br />

Memphis<br />

Bioworks<br />

Foundation<br />

Memphis<br />

Bioworks<br />

Foundation<br />

Dudley Street<br />

Pauline Street<br />

Union Avenue<br />

Veterans Administration<br />

Medical <strong>Center</strong><br />

36 36<br />

37 37<br />

BMH<br />

Pauline Street<br />

38 38<br />

Baptist<br />

Memorial<br />

Hospital<br />

Eastmoreland Avenue<br />

Court Avenue<br />

Camila Street<br />

Madison Avenue<br />

Camila Street<br />

Baptist<br />

Memorial<br />

Hospital<br />

Jefferson Avenue<br />

Baptist<br />

Memorial<br />

Hospital<br />

Linden Avenue<br />

K L M N O P<br />

Somerville Street<br />

Waldran Boulevard<br />

1<br />

2<br />

3<br />

4<br />

5<br />

6<br />

7<br />

8<br />

9<br />

10<br />

11<br />

17


Mission<br />

UT <strong>Health</strong> <strong>Science</strong> <strong>Center</strong> aims to improve human health through education, research, clinical care and public service.<br />

<strong>The</strong> UTHSC campuses include colleges <strong>of</strong> Allied <strong>Health</strong> <strong>Science</strong>s, Dentistry, Graduate <strong>Health</strong> <strong>Science</strong>s,<br />

Medicine, Nursing and Pharmacy. Patient care, pr<strong>of</strong>essional education and research are carried out at hospitals<br />

and other clinical sites across <strong>Tennessee</strong>. Endowed pr<strong>of</strong>essorships, Research <strong>Center</strong>s <strong>of</strong> Excellence,<br />

and continuing relationships with research and healthcare facilities across <strong>Tennessee</strong><br />

ensure that both basic science and applied research stay focused on contemporary health topics.<br />

<strong>University</strong> <strong>of</strong> <strong>Tennessee</strong> <strong>Health</strong> <strong>Science</strong> <strong>Center</strong> Administration<br />

Chancellor (Interim)<br />

Hershel P. Wall, M.D.<br />

Chief <strong>of</strong> Staff and Executive Vice Chancellor (Interim)<br />

Kennard D. Brown, M.P.A., J.D.<br />

Deans:<br />

College <strong>of</strong> Allied <strong>Health</strong> <strong>Science</strong>s (Interim)<br />

William R. Frey, Ph.D. Vice Chancellors:<br />

College <strong>of</strong> Dentistry Academic, Faculty and Student Affairs<br />

Russell O. Gilpatrick, D.D.S. Cheryl R. Scheid, Ph.D.<br />

College <strong>of</strong> Graduate <strong>Health</strong> <strong>Science</strong>s Community Affairs (Interim)<br />

Richard D. Peppler, Ph.D. Kennard D. Brown, M.P.A., J.D.<br />

College <strong>of</strong> Medicine Development and Alumni Affairs<br />

Executive Dean and Memphis Dean (Interim) Linda Garceau-Luis , M.B.A., M.A.<br />

Steve J. Schwab, M.D. Finance and Operations<br />

Knoxville Dean Anthony A. Ferrara, C.P.A., M.A.S.<br />

James J. Neutens, Ph.D. <strong>Health</strong> System Affairs<br />

Chattanooga Dean Michael R. Caudle, M.D.<br />

David C. Seaberg, M.D. Research<br />

College <strong>of</strong> Nursing Leonard R. Johnson, Ph.D.<br />

Donna Hathaway, Ph.D.<br />

College <strong>of</strong> Pharmacy Director, Communications and Marketing<br />

Dick R. Gourley, Pharm.D. Sheila Champlin, M.A.

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