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<strong>Tecan</strong> Journal<br />

Edition 1 2005<br />

ISSN 1660-5276<br />

Cellerity meets customer needs for<br />

automated cell culture<br />

page 6<br />

HS 400 Hybridization Station makes<br />

light work of genomic DNA patterns<br />

page 8<br />

Talk to <strong>Tecan</strong>’s Customer Support<br />

page 14


2 GLOBAL NEWS<br />

Welcome to the<br />

“new look” <strong>Tecan</strong> Journal<br />

Barbara Stobbe and Mark Wang<br />

<strong>Tecan</strong> Journal 1/2005<br />

Thomas Bachmann<br />

Chief Executive Officer<br />

(CEO)<br />

Firstly, we would like to take this<br />

opportunity to introduce Thomas<br />

Bachmann, who joined <strong>Tecan</strong> in February<br />

2005 as the new CEO. Thomas brings a<br />

wealth of experience in international<br />

senior management to his new role and<br />

will be focusing his efforts on employees,<br />

customers and investors alike.<br />

“My strong personal<br />

commitment to <strong>Tecan</strong> is<br />

to continue developing<br />

excellent relationships<br />

with our customers and<br />

partners, and to maintain<br />

their confidence and<br />

trust. We will focus on issues that are<br />

important to our customers<br />

and aim to win the respect<br />

of the life science, diagnostic<br />

and pharmaceutical worlds<br />

by consistently providing<br />

the solutions and support<br />

they need.”<br />

Training Mark Wang at <strong>Tecan</strong> Switzerland and Austria<br />

Our presence in the Asia-Pacific region<br />

has been boosted by the opening<br />

of the <strong>Tecan</strong> office in Beijing. Our new<br />

<strong>Tecan</strong> representatives are Mark Wang<br />

(mark.wang@tecan.com) and Barbara<br />

Stobbe (barbara.stobbe@tecan.com).<br />

Distributors in this region recently met at<br />

the Asia Pacific Distributor Sales Meeting<br />

2005 in Bangkok. The meeting was<br />

hosted by Marco Vittoz, Director Sales<br />

International, and attended by more than<br />

20 members of <strong>Tecan</strong> South East Asia<br />

(SEA) distributors and <strong>Tecan</strong> representatives<br />

from China and (SEA), as well as<br />

new area managers for India and New<br />

Zealand. During the meeting, information<br />

was shared between <strong>Tecan</strong> and the<br />

distributors on a personal basis and<br />

<strong>Tecan</strong>’s sales and support strategy in the<br />

Asia Pacific market was discussed.<br />

Asia Pacific Distributor Sales Meeting 2005 in Bangkok


The <strong>Tecan</strong> OEM components division in<br />

California’s Silicon Valley has been<br />

manufacturing OEM instrument<br />

components under the Cavro® brand for<br />

more than 30 years. We work directly<br />

with other companies, giving them<br />

access to our products and collaborating<br />

with R&D, sales and service organizations<br />

to develop and commercialize validated,<br />

automated solutions.<br />

Many leading laboratory instrument<br />

manufacturers already place their trust in<br />

<strong>Tecan</strong>’s Cavro OEM components for the<br />

critical functions of precision liquid<br />

handling and robotics and, as well as<br />

relying on our product performance and<br />

reliability, they also benefit from <strong>Tecan</strong>’s<br />

ISO 13485 quality system and QSR<br />

compliance.<br />

The RSP 9000 is an XYZ robotic module.<br />

It is the perfect base unit to automate<br />

OEM liquid handling applications<br />

Detection<br />

Taking microarrays by storm<br />

<strong>Tecan</strong> teams up with Novartis to create<br />

an impressive new microarray technology<br />

with the potential for use in novel<br />

applications page 4<br />

Application Biopharma<br />

Cellerity TM meets customer needs for<br />

automated cell culture<br />

Cellerity, <strong>Tecan</strong>’s new fully automated<br />

system for cell line growth and<br />

maintenance, promises to be the most<br />

affordable, compact and flexible<br />

instrument of its kind page 6<br />

Detection/Application Biopharma<br />

HS 400TM Hybridization Station makes<br />

light work of genomic DNA patterns<br />

The HS 400 is used to investigate<br />

molecular changes along different<br />

pathways in hereditary non-polyposis<br />

colorectal cancer page 8<br />

<strong>Tecan</strong> prepares launch of new hybridization<br />

stations<br />

HS 400 Pro and HS 4800 Pro further<br />

enhance quality page 9<br />

CONTENTS<br />

Application Biopharma<br />

New developments for automation in<br />

proteomic research<br />

A robust sample preparation protocol for<br />

MALDI-TOF MS analysis of tryptic peptide<br />

extracts using the <strong>Tecan</strong> TeMO-96<br />

pipetting robot page 10<br />

Detection<br />

GENios Pro TM – the multi-functional<br />

reader proves a hit for multiplexing<br />

<strong>Tecan</strong>’s multi-functional microplate reader<br />

is used to multiplex HeLa cell-based<br />

viability and apoptosis assays page 12<br />

“<strong>Tecan</strong>’s good customer service is very<br />

important to us”<br />

A long-standing customer backs <strong>Tecan</strong>’s<br />

continuing commitment to customer<br />

service page 14<br />

Events<br />

Calendar Come and meet <strong>Tecan</strong> at<br />

conferences and meetings around the<br />

world in 2005<br />

page 16<br />

<strong>Tecan</strong> Journal 1/2005<br />

3


4 GLOBAL DETECTION NEWS<br />

Taking microarrays by storm<br />

A recent collaboration between <strong>Tecan</strong> and<br />

Novartis Pharma AG in Basel has produced a new<br />

highly sensitive microarray technology that has<br />

the potential to open up new applications and<br />

capabilities for the pharmaceutical industry.<br />

Developed by the Custom Microarray<br />

Laboratory at Novartis, Evanescent<br />

Resonator (ER) technology produces a<br />

signal from fluorescence-based<br />

microarray analyses that is up to a<br />

hundred times greater than that from<br />

traditional, passive glass slides. This means<br />

that less sample material is required to<br />

give a strong signal, and there is a better<br />

signal-to-noise ratio so that even<br />

samples with extremely small<br />

concentrations can be analyzed. The<br />

secret of this heightened sensitivity lies<br />

in the optical configuration of the<br />

microarray platform, the NovaChip.<br />

The surface area built into the<br />

submicrometer region produces an<br />

interference effect for incident light<br />

and has the effect of inducing<br />

stronger resonance. At the same time,<br />

the excitation energy is restricted to the<br />

ultra-thin dielectric layer and this is the<br />

<strong>Tecan</strong> Journal 1/2005<br />

principle behind the evanescent<br />

resonator. The restriction of the (laser)<br />

energy to the thin surface layer<br />

generates enormous electromagnetic<br />

force. These so-called evanescent fields<br />

strengthen the fluorescence signal of<br />

molecules bonded to the surface and<br />

create a clear demarcation between that<br />

area and the background fluorescence.<br />

However, to take advantage of the<br />

fluorescence strengthening effect of the<br />

ER principle, it is necessary to adjust the<br />

angle of incidence of the excitation beam.<br />

The instruments in the LS Laser Scanner<br />

series from <strong>Tecan</strong> are the only commercial<br />

microarray scanners available that offer<br />

this option and, just as importantly, give<br />

highly reproducible results with<br />

maximum precision*. The LS 200 has<br />

been in daily use at Novartis since 2002<br />

and was chosen, not only for the<br />

LS Reloaded & Connect for microarray<br />

batch scanning<br />

adjustable angle, but also because of the<br />

variety of measuring modes it offers.<br />

A particular advantage of the new<br />

technology is the ability to check the<br />

application of the probe sample, whether<br />

DNA, oligonucleotides or proteins etc.,<br />

to the slides. Even if the application<br />

procedure is of the highest quality, with<br />

such a large number of spots there will<br />

inevitably be some left without probe<br />

sample and it is important to register<br />

these positions before the actual<br />

experiment in order to avoid false<br />

negative results. With the LS 200 in<br />

scatter mode, the buffer residues which<br />

form on each spot when the probe fluid<br />

has been successfully applied can be<br />

detected as salt crystals without<br />

compromising the array. The LS 200 is<br />

also completely compatible with a closed<br />

stacking device, Connect and so this<br />

checking stage can easily be carried out<br />

overnight, processing batches of up to<br />

200 slides, four at a time.<br />

To take full advantage of the NovaChip<br />

technology, the quality and<br />

reproducibility of hybridization is also<br />

crucial and for this the Novartis team<br />

also turned to <strong>Tecan</strong>. <strong>Tecan</strong>’s HS 4800<br />

Hybridization Station is completely


HS 4800 for 48 slides processing<br />

automatic, from pre-hybridization to<br />

drying the slides and, as there is no<br />

manual intervention of any sort, it is<br />

practically impossible for the array to<br />

become contaminated. The small sample<br />

volumes and active mixing of the sample<br />

during hybridization also help to achieve<br />

maximum sensitivity. There is currently<br />

no comparable hybridization instrument<br />

which offers all these features with the<br />

additional benefit of flexibility of<br />

throughput for up to 48 slides per run.<br />

For the Novartis program, the HS 4800<br />

is set up in the afternoon with up to<br />

24 microarray slides loaded with the<br />

fluorescence-marked samples and left to<br />

run overnight. Integrated automated<br />

drying of slides with nitrogen protects<br />

fluorescence labels from oxidization until<br />

they are measured next morning using<br />

LS 200 with Connect stacker.<br />

The data are then automatically analyzed<br />

using Array-Pro® Analyzer Software from<br />

Media Cybernetics based in Silver Spring,<br />

MD, USA. This software takes away any<br />

chance of operator variability by means<br />

of the patented fixing of the spot<br />

localization to the exact pixel and<br />

automation of the computer algorithms.<br />

More spots and genes are detectable by ER scanning<br />

DETECTION<br />

The calculation is carried out within<br />

seconds and is therefore ideally suited<br />

to high throughput, fully automated<br />

methods such as this.<br />

The new technology has proven to be<br />

extremely flexible and can be used for<br />

any kind of single or dual color array<br />

application, with standard 3 x 1 inch<br />

microarray glass slides as well as other<br />

glass dimensions and chip formats. In<br />

summary, the NovaChip provides an<br />

excellent solution for extending the<br />

applications of microarray technology<br />

and, at the same time, reduces the<br />

number of steps in sample preparation.<br />

*The LS Reloaded, available since late 2004, has<br />

three times the sensitivity at 532 nm excitation<br />

wavelength and twice the sensitivity at 633 nm<br />

excitation wavelength of the LS 200 used by Novartis.<br />

Signal to background ratio on NovaChip depends on excitation angle<br />

5


6 APPLICATION BIOPHARMA<br />

Cellerity TM meets customer needs<br />

for automated cell culture<br />

The launch of<br />

Cellerity TM , <strong>Tecan</strong>’s<br />

dedicated system<br />

for automated cell<br />

culture, was met<br />

with resounding<br />

enthusiasm at the<br />

Lab Automation<br />

2005 show in San<br />

José, California, this<br />

past February.<br />

Delegates visiting the <strong>Tecan</strong> stand and<br />

guests at a specially held seminar were<br />

thrilled to see Cellerity in action and all<br />

signs show that it promises to be the<br />

most affordable, compact and flexible<br />

instrument on the market for cell culture<br />

and maintenance. The new system can<br />

be relied upon to automate all standard<br />

cell culture processes such as passaging,<br />

splitting, counting and plating. It can<br />

simultaneously grow different cell lines<br />

and maintain them in parallel.<br />

Cellerity is the latest product to result<br />

from <strong>Tecan</strong> working together with<br />

<strong>Tecan</strong> Journal 1/2005<br />

The pierceable cap of the Corning RoboFlask vessel helps maintain a sealed environment during<br />

media exchange. It can be removed for manual access.<br />

partner companies who are leaders<br />

in their own particular fields. In the<br />

development of Cellerity and its<br />

corresponding consumables, <strong>Tecan</strong>,<br />

Corning® and Invitrogen GIBCO® have<br />

directly responded to the needs of<br />

laboratories faced with the constant<br />

demand for a reliable, timely and<br />

consistent supply of high-quality cells.<br />

Cellerity is based on the Freedom EVO®<br />

200 platform with an eight-tip liquid<br />

handling arm (LiHa) which has four<br />

channels for handling cells and four for<br />

adding sterile liquids such as media,<br />

additives or buffers. An integrated robotic<br />

manipulator (RoMa) arm transports<br />

plates and flasks around the workspace.<br />

The RoMa directly accesses all pipetting<br />

stations, incubators, storage devices and<br />

other modules. The system can handle<br />

automation-friendly cell culture flasks. All<br />

pipetting and cell manipulation steps are<br />

performed within a laminar flow sterile<br />

hood or optionally a class II biosafety<br />

cabinet. The robotic incubator controls<br />

CO2, temperature and relative humidity<br />

and can hold up to 1000 of both flasks<br />

and assay plates. CellGEM, the new<br />

Cellerity control software for Cell Growth,


Expansion and Maintenance, is an<br />

intuitive software interface that guides<br />

users through the process of initiating a<br />

cell line expansion request. A calendarstyle<br />

interface allows easy selection of<br />

the dates upon which cells are required<br />

for delivery. The CellGEM scheduling<br />

software calculates the optimal times for<br />

splitting, harvesting, and plating and<br />

then instructs the instrument to perform<br />

those actions automatically. The software<br />

maintains a record of the cells grown in<br />

the system, including growth rates and<br />

passage number. Additionally, CellGEM<br />

keeps track of current volumes of media<br />

and consumables available in the system<br />

and warns users of depleting resources.<br />

The whole system can even be left<br />

unattended over a weekend with<br />

instructions to produce cells ready for<br />

Monday morning, effectively providing<br />

the laboratory with an extra two working<br />

days. Bar coding of the flasks means that<br />

the system knows exactly which protocol<br />

to apply to each flask.<br />

Standard T-flasks for cell culture are<br />

not automation-friendly and require<br />

expensive industrial equipment to<br />

manipulate them between stages for<br />

storage, decapping and incubating. To<br />

address this problem, <strong>Tecan</strong> has worked<br />

closely with the Life Sciences Division of<br />

Corning Inc. to develop the automationfriendly<br />

RoboFlask vessel for Cellerity,<br />

designed to meet standard microplate<br />

dimensions. These flasks can also be<br />

handled by other existing <strong>Tecan</strong> hardware<br />

and can be stored in instruments<br />

designed to hold microplates, such as<br />

incubators, stackers and carousels.<br />

The RoboFlask vessel has been validated<br />

for the successful growth of many<br />

different common and rare cell lines, of<br />

human and other mammalian origin.<br />

With a smaller footprint than a regular<br />

75 cm 2 flask, the RoboFlask vessel has a<br />

cell growth surface area of 92.6 cm 2 ,<br />

allowing the growth of approximately<br />

10 7 cells per flask. The flask cap contains a<br />

septum that can be pierced by the LiHa<br />

numerous times without compromising<br />

the flask’s sterility because the cap is<br />

sterilized with ethanol prior to each<br />

piercing and otherwise remains closed.<br />

Each flask is fitted with a vent with a<br />

large hydrophobic gas permeable<br />

membrane for aeration and pressure<br />

exchange.<br />

A high speed AutoLoader stores empty<br />

RoboFlask vessels and transfers them<br />

directly onto a device designed for access<br />

by liquid handling tips, and for shaking<br />

and knocking of flasks to harvest cells.<br />

Harvested cells may be pumped into<br />

Corning’s ProCulture® spinner flasks,<br />

where cell suspensions are diluted as<br />

necessary for plating or seeding of new<br />

flasks, based on the measurement of an<br />

Innovatis Cedex cell counter. Cellerity has<br />

been designed to accommodate GIBCO<br />

cell culture media and reagents providing<br />

Cellerity customers with high-quality<br />

cell culture products efficiently and<br />

affordably. A large refrigerator unit on<br />

Cellerity holds up to eight bulk GIBCO<br />

media bags whose contents can be<br />

warmed by an on-line heater to the<br />

appropriate temperature immediately<br />

before dispensing. The connection<br />

between Cellerity’s liquid handling<br />

system and GIBCO disposable media<br />

bags has been designed to minimize the<br />

risks of contamination. Liquids such as<br />

cell dissociation products (eg, Trypsin,<br />

TrypLE Express) or transfection reagents<br />

(eg, Lipofectamine) which are used in<br />

smaller volumes can be kept in cooled or<br />

heated containers on the Freedom EVO<br />

deck, where they can be directly accessed<br />

by the LiHa.<br />

APPLICATION BIOPHARMA<br />

<strong>Tecan</strong>’s fully automated system for cell<br />

line growth and maintenance will greatly<br />

benefit cell culture laboratories. The<br />

system ensures improved quality of cells<br />

for a wide range of applications and frees<br />

up laboratory personnel for other<br />

research activities.<br />

Gentle shaking of cell culture flasks<br />

The robot-friendly flasks are compatible with<br />

many <strong>Tecan</strong> automation options including the<br />

RoMa arm on the Freedom EVO and the<br />

AutoLoader<br />

<strong>Tecan</strong> Journal 1/2005<br />

7


8 DETECTION/APPLICATION BIOPHARMA<br />

HS 400 TM Hybridization Station makes<br />

light work of genomic DNA patterns<br />

Hereditary non-polyposis colorectal cancer<br />

(HNPCC) is a familial syndrome that gives a<br />

much higher risk of developing colon<br />

cancer and accounts for 2-5 % of all cases.<br />

Two different molecular pathways are<br />

thought to be involved in the development<br />

of this disease, one being punctual<br />

alterations of the DNA, and the other,<br />

chromosomal instabilities in<br />

microsatellites. Dr Wolfgang Dietmaier and<br />

colleagues at the Regensburg University<br />

Clinic in Germany have been using <strong>Tecan</strong>’s<br />

HS 400 Hybridization Station to compare<br />

genome-wide DNA profiles in samples<br />

from these two variants. It has already<br />

been shown that microsatellite-stable<br />

(MSS) and microsatellite-instable (MSI)<br />

tumor variants can be histologically<br />

differentiated and the aim of this study<br />

was to compare the frequency distribution<br />

of individual genes in tumor tissue with<br />

healthy tissue.<br />

DNA was extracted from surgically<br />

removed tumor and normal mucosa<br />

samples and labelled with Cy3® and Cy5®<br />

red fluorescence, respectively. It was then<br />

hybridized against arrays of a defined BAC<br />

library of healthy samples, consisting of 32<br />

blocks (4 x 8 blocks), each approximately<br />

640 spots, dried on slides. This allowed<br />

direct comparison of the DNA copy<br />

numbers of the pathological and healthy<br />

samples, where DNA gains in a defined<br />

locus in the tumor DNA were represented<br />

by red spots, and DNA losses were<br />

represented by green spots. If the tumor<br />

DNA was present in equal amounts to that<br />

in the normal mucosa (i.e. a healthy ratio),<br />

then the two labels neutralized each other<br />

to an orange colour.<br />

The HS 400 Hybridization Station made<br />

the procedure extremely simple. The arrays<br />

<strong>Tecan</strong> Journal 1/2005<br />

were placed in the special slide holder and<br />

the carrier was then inserted into the<br />

instrument in dry form. The entire method<br />

was carried out in stages – pre-washing,<br />

insertion of the hybridization sample,<br />

hybridization, four washing steps and,<br />

finally, drying with nitrogen – and the<br />

individual times, temperatures and buffers<br />

for each stage were optimized for this<br />

particular application.<br />

This application highlighted a number of<br />

advantages that the HS 400 has over other<br />

hybridization stations, many of which<br />

concentrate on minimizing the risk of<br />

contamination and other artifacts at<br />

different stages throughout hybridization.<br />

The entirely automated process takes place<br />

in the unique four microarray slide holder<br />

including the final drying step, which<br />

means that the arrays are dry when they<br />

enter and leave the instrument and do not<br />

need to be handled throughout the<br />

hybridization.<br />

Cy3 and Cy5 are registered trademarks of Amersham, Inc.<br />

Figure 1: Example of one block of the<br />

microarray used for profiling of<br />

hereditary non-polyposis colorectal<br />

cancer (HNPCC). Automated<br />

processing in <strong>Tecan</strong>’s HS 400 leads to<br />

fewer background artifacts, higher<br />

sensitivity and specificity compared<br />

to other procedures.


<strong>Tecan</strong> prepares launch of<br />

new hybridization stations<br />

HS 400 Pro and<br />

HS 4800 Pro further<br />

enhance quality, reproducibility<br />

and application<br />

flexibility for microarray<br />

hybridizations<br />

<strong>Tecan</strong>’s HS Series of hybridization stations<br />

are well proven tools to automate a<br />

variety of microarray applications, including<br />

DNA and protein arrays, and in situ<br />

hybridization.<br />

The new HS 400 Pro and HS 4800 Pro<br />

contain <strong>Tecan</strong>’s unique ABS (Active Bubble<br />

Suppression) system, which prevents<br />

formation of bubbles within the chambers,<br />

eliminating hybridization artifacts and<br />

enhancing consistency of results. Novel<br />

dual chambers are easily interchangeable<br />

with single area chambers and enable<br />

the new systems to fully automate the<br />

processing of two independent subarrays<br />

per slide with no risk of carry-over.<br />

HS 400 Pro TM and HS 4800 Pro TM<br />

share the benefits of <strong>Tecan</strong>’s<br />

existing hybridization systems:<br />

DETECTION/APPLICATION BIOPHARMA<br />

• Fully automated hybridization – from<br />

pre-hybridization to automated slide<br />

drying<br />

• Less background, fewer artifacts,<br />

higher sensitivity<br />

• Designed to maximize reproducibility<br />

and reliability of results<br />

• Easy to use, low maintenance<br />

• Low volume hybridization chambers<br />

save precious samples<br />

• Two models can handle a variety of<br />

throughputs<br />

New products<br />

<strong>Tecan</strong> Journal 1/2005<br />

9


10 APPLICATION BIOPHARMA<br />

New developments for automation<br />

in proteomic research:<br />

MALDI sample preparation<br />

for high throughput peptide<br />

mass fingerprinting<br />

Matrix-Assisted Laser Desorption Ionization<br />

Time-of-Flight (MALDI-TOF) mass spectrometry<br />

(MS) is a key technique for the<br />

analysis of proteins and peptides in proteomic<br />

research. It can be used to analyze<br />

molecules over a wide molecular weight<br />

range from a few hundred daltons up to<br />

300kDa with very high accuracy and with<br />

detection sensitivities in the low fmol<br />

range. It is very useful in peptide mass<br />

fingerprint analysis of large proteins.<br />

Sample preparation and the preparation<br />

of an appropriate analyte/matrix mixture<br />

are critical limiting factors in MALDI-TOF<br />

mass spectrometric analysis. To achieve<br />

high sensitivity, impurities such as salts<br />

and buffer components must be washed<br />

away efficiently with minimal loss of<br />

analytes.<br />

Figure 1: MALDI sample preparation<br />

performed on a <strong>Tecan</strong> Genesis Workstation<br />

with a TeMO-96 multi-pipetting unit<br />

<strong>Tecan</strong> Journal 1/2005<br />

The two experiments described below<br />

evaluate a robust sample preparation<br />

protocol for MALDI-TOF MS analysis of<br />

tryptic peptide extracts using the <strong>Tecan</strong><br />

TeMO-96 pipetting robot (Figure 1), which<br />

aims to make MALDI-TOF more accessible<br />

for high throughput applications.<br />

Method<br />

Our sample preparation is based on the<br />

α-cyano-4-hydroxycinnamic acid (CHCA)<br />

affinity preparation method (Gobom et<br />

al. (2001), Anal. Chem. 73, 434-438) in<br />

which the tryptic peptide extracts are<br />

applied onto a pre-structured anchor<br />

MALDI sample plate (Scout-MTP 384/600<br />

AnchorChip; Bruker Daltonics, Bremen,<br />

Germany) prepared with a thin layer of<br />

the MALDI matrix CHCA. The TeMO<br />

worktable accommodates eight 96-well<br />

microtiter plates with peptide samples<br />

and two MALDI sample plates, each with<br />

384 sample positions. The TeMO-96<br />

pipetting head transfers 1 µL of each<br />

peptide sample from the microtiter<br />

plates to the MALDI sample plate where<br />

the droplets are allowed to dry. New racks<br />

of disposable pipette tips are delivered by<br />

the <strong>Tecan</strong> TeStack for each set of 96<br />

tryptic extracts to avoid sample cross<br />

contamination. After the tryptic digest<br />

samples have dried, contaminants are<br />

washed away by dispensing 3 µL droplets<br />

of 0.1 % trifluoroacetic acid (TFA) onto the<br />

sample, followed by aspiration of the<br />

droplet after three seconds. Between<br />

washing of different sample spots, the<br />

pipette tips were rinsed using the <strong>Tecan</strong><br />

washing station in a multi-step<br />

procedure included in the MALDI sample<br />

washing procedure. After emptying the<br />

tips, two cleaner steps with 90 µL MilliQ<br />

water each were employed, with soak<br />

Dr. Niklas Gustavsson*, Dr. Dieter Weichart,<br />

Dr. Johan Gobom, Max Planck Institute for<br />

Molecular Genetics, Berlin<br />

*now based at the Mass Spectrometry group,<br />

Dept of Plant Biochemistry, Lund University, Sweden<br />

times of 1 second and flow through set at<br />

80. The first step included three cycles,<br />

with change of 5 µL each, and the second<br />

step included two cycles without change.<br />

Controlling carry-over during MALDI<br />

sample plate preparation<br />

The consumption of pipette tips during<br />

washing of sample spots on the MALDI<br />

sample plates can be minimized by using<br />

the same set of tips for washing of all<br />

samples on an entire sample plate, as<br />

long as the pipette tips can be rinsed<br />

sufficiently between washing of different<br />

sample spots on the MALDI sample plate.<br />

The efficiency of the pipette tip washing<br />

procedure was tested by preparing a set<br />

of three single peptides on adjacent<br />

sample spots on the MALDI sample plate<br />

(Figure 2), followed by washing the whole<br />

sample plate with one set of pipette tips.<br />

Angiotensin I, neurotensin and ACTH 18-<br />

39 were added onto quadrant Q1, Q2 and<br />

Q3 respectively. Nothing was added to<br />

quadrant Q4. The four quadrants were<br />

washed using the previously mentioned<br />

protocol with two cycles of 3 µL of 0.1 %<br />

TFA each. As shown in the MALDI-TOF<br />

mass spectra in Figure 2, no carry-over of<br />

the peptide prepared on the previous<br />

sample spot could be detected on the<br />

following spot. None of the peptides<br />

prepared on quadrants Q1 to Q3 were<br />

detected in the mass spectrum from<br />

quadrant Q4. The preparation of the<br />

three single peptides was performed in 32<br />

parallel sets, with no carry-over detected<br />

in any of the mass spectra.<br />

Assessing reproducibility of<br />

preparation for MALDI-TOF MS<br />

The reproducibility of the automatic<br />

sample application and MALDI sample


plate washing procedures was tested by<br />

preparing the same set of 368 tryptic<br />

digests of human proteins excised from a<br />

two-dimensional gel onto two MALDI<br />

sample plates. The plates were processed<br />

in parallel, and spectra were acquired<br />

under identical conditions on an Ultraflex<br />

LIFT mass spectrometer (Bruker Daltonics,<br />

Bremen, Germany). Using the MASCOT<br />

software, the peptide mass fingerprint<br />

data were submitted to a database<br />

search in the Swiss protein database<br />

(http://www.expasy.org/sprot/),<br />

considering scores larger than 62<br />

indicative of reliable identification<br />

(p


12 DETECTION<br />

GENios Pro TM<br />

– the multi-functional reader<br />

proves a hit for multiplexing<br />

Multiplexing assays for any applications offer a range of benefits over<br />

standard assays. In addition to being amenable to high throughput, they<br />

also allow the measurement and analysis of more than one parameter<br />

simultaneously and save time and money by conserving precious compounds<br />

and cell culture reagents.<br />

However, for multiplexing to really work,<br />

there is the challenge of developing<br />

homogenous assays that do not require<br />

washing and sample handling steps,<br />

and the requirement of excellent<br />

performance, flexibility and multifunctionality<br />

from the detection<br />

instrument used.<br />

Prof. Dr. Gadek-Wesierski and her research<br />

team at the Medical University of Vienna<br />

have shown that the GENios Pro multifunctional<br />

microplate reader from <strong>Tecan</strong><br />

meets all these criteria and has a number<br />

of features such as individual optics<br />

for all reading modes that make it<br />

particularly suitable for multiplexing of<br />

cell-based assays with various readouts .<br />

The team in Vienna aimed to multiplex<br />

two cell-based assays having fluorescent<br />

<strong>Tecan</strong> Journal 1/2005<br />

and luminescent output to obtain<br />

information regarding viability and<br />

apoptosis directly from the same sample<br />

well, using Cisplatin (CP) as a test<br />

substance for treating HeLa cells. CP is a<br />

widespread anticancer drug used for<br />

chemotherapy. It inhibits viability and<br />

proliferation and induces apoptosis in<br />

human cervical carcinoma cells (see<br />

Figure 1).<br />

In the experiment, HeLa cells S3 were<br />

cultured in 96-well plates and treated<br />

with increasing concentrations of CP, the<br />

CellTiter-Blue® Cell Viability Assay from<br />

Promega was used to calculate viability.<br />

This assay determines the number of<br />

metabolically active cells based on the<br />

direct addition of resazurin to cells in a<br />

culture medium, which is then converted<br />

into resorufin by the cells. Measurements<br />

Dr. Gerlinde Zerza-Schnitzhofer,<br />

Dr. Manfred Lansing, Mag. Marieta<br />

Gueorguieva 1 , Mag. Carmen Ranftler<br />

and A.o.Univ. Prof. Dr. Jozefa Gadek-<br />

Wesierski 1<br />

<strong>Tecan</strong> Austria GmbH, Grödig, Austria and<br />

1 Medical University of Vienna, Vienna, Austria<br />

Figure 1: Detection of apoptotic HeLa cells.<br />

Untreated HeLa cells and HeLa cells treated with<br />

40 µM cisplatin (15 hours) were fixed with<br />

methanol and stained with a fluoresceinconjugated<br />

monoclonal mouse antibody<br />

(M30-CytoDeath, Roche, Vienna, Austria). The<br />

CytoDeath antibody is specifically for caspase-3<br />

cleaved cytokeratin-18 and stains cells in various<br />

stages of apoptosis. Cell nuclei were made<br />

visible using DAPI. Mitotic (M) and apoptotic (A)<br />

cells are marked with the following symbol ->.


were taken after the appropriate<br />

incubation period using the GENios Pro<br />

reader (Figure 2). Resorufin is activated at<br />

545 nm and emission is detected at<br />

590 nm. The fluorescence reading can<br />

then be correlated with the number of<br />

metabolically active, living cells, if<br />

appropriate serial dilutions of cells have<br />

been performed accordingly.<br />

In experiments with adherent cells,<br />

excitation and detection through the<br />

bottom of a microplate are preferable to<br />

top reading as this reduces disruptive<br />

influences of the culture medium on the<br />

measurement signal. A preliminary test<br />

with CellTiter-Blue® showed that the<br />

detection limits in bottom reading mode<br />

were between six and eight times lower<br />

than in top reading mode. This means<br />

that fewer cells and materials can be<br />

used to achieve the same results, which is<br />

particularly advantageous for cell-based<br />

applications.<br />

Figure 2: GENios Pro microplate reader. Features<br />

such as rapid fluorescence bottom reading and<br />

reagent addition by injectors make this<br />

multimode reader particularly suitable for a<br />

large number of cell-based assays in HTS.<br />

Figure 3 shows the results of the CellTiter-<br />

Blue® assay after the HeLa cells were<br />

incubated for 24 hours with various<br />

concentrations of CP (0, 1, 5, 20, 40 µM).<br />

As the CP concentration increases, the<br />

number of metabolically active cells is<br />

reduced by approximately 70 %.<br />

Information on the apoptosis rate was<br />

obtained in the multiplex assay using the<br />

Promega Caspase-Glo 3/7 assay to<br />

measure the activity of caspase-3 and -7,<br />

both of which play a key role in the<br />

apoptosis of mammalian cells. Caspase<br />

activity is measured by adding a<br />

preluminescent substrate solution into<br />

Prof. Dr. Gadek-Wesierski and her<br />

research team are based at the<br />

Institute of Cancer Research at the<br />

Medical University of Vienna. The<br />

institute is focused on basic cancer<br />

research, scientific education and the<br />

development of a new understanding<br />

of cancer disease.<br />

The group is studying the mechanisms<br />

of cell cycle regulation during<br />

malignant transformation of cells. The<br />

expression, activation and inhibition of<br />

tumor suppression proteins (eg, p53),<br />

Figure 3: Multiplex analysis of viability and<br />

apoptosis in HeLa cells. Viability was analyzed<br />

using CellTiter-Blue® Assay and apoptosis using<br />

Caspase-Glo 3/7 Assay following incubation of<br />

the cells in 96-well microplates with 0 – 40 µM<br />

cisplatin (CP).<br />

the sample wells containing the CellTiter-<br />

Blue reagents, after having taken the<br />

viability readings. The substrate solution<br />

contains a stabilized luciferase and is<br />

optimized for caspase/luciferase activity<br />

and cell lysis. The substrate solution<br />

destroys the cells, the preluminescent<br />

substrate is cleaved by active caspases<br />

releasing luciferin that is then consumed<br />

by the luciferase. The resulting<br />

luminescent signal is proportional to<br />

caspase activity and can be measured.<br />

The results in Figure 3 show a clear<br />

increase in apoptosis at high CP<br />

concentrations. The number of apoptotic<br />

cells increased in this experiment by<br />

approximately four fold. Correlating the<br />

readings from both the viability and<br />

apoptosis analyses with the number of<br />

cells allows the percentage of apoptotic<br />

cells to be determined.<br />

Summary<br />

Multiplexing is an efficient way of<br />

obtaining more than one set of<br />

experimental data from the same sample<br />

well in order to better understand<br />

CUSTOMER DETECTION<br />

SUPPORT<br />

which play a key role in cycle control, are<br />

investigated in different cell lines and<br />

species. Additionally, the group is studying<br />

the effect of new anti-cancer drugs, in<br />

particular regarding their potential for<br />

reactivating the tumor suppressor protein<br />

p53, which results in enhanced efficiency<br />

of chemotherapy treatment.<br />

http://www.p53parp.at<br />

complex cellular processes. Additionally,<br />

multiplexing offers the advantage of<br />

reducing experimental variation, like<br />

fluctuations in cell numbers due to cell<br />

clumping and dispensing. Homogenous<br />

assays, which require no washing and<br />

separation stages, can easily be<br />

integrated into <strong>Tecan</strong> Robotic systems<br />

with the GENios Pro Reader for use in<br />

high throughput screening. Stages such<br />

as the addition of various assay reagents<br />

by injectors into 96 and 384 well plates,<br />

incubation at 37° C and plate-shaking,<br />

can all be carried out in this modular<br />

reader. The measurement methods<br />

available on the GENios Pro are suitable<br />

for a large number of multiplex assays<br />

and range from absorption and<br />

fluorescence (FI, FRET, TRF) to various<br />

luminescence techniques (BRET2, Glow<br />

and Flash Type Luminescence).<br />

This experiment combined two cell-based<br />

assays in one multiplex experiment but,<br />

using additional assays, e.g. LDH release<br />

or reporter gene assays, the team<br />

believes that multiplexing could easily be<br />

extended to answer further questions.<br />

Acknowledgement<br />

We would like to thank Prof. Dr. Gadek-<br />

Wesierski and her team at the University<br />

of Vienna for providing the data and<br />

Dr. Katarina Bohm and Dr. Heinz Winkler<br />

from Promega for kindly providing the<br />

reagents.<br />

GENios Pro is a trademark of <strong>Tecan</strong> Group Ltd.<br />

Cell Titer-Blue® and Caspase-Glo 3/7 Assays are trademarks<br />

of Promega corporation.<br />

BRET2 is a proprietary technology from BioSignal Packard.<br />

Patents pending.<br />

<strong>Tecan</strong> Journal 1/2005<br />

13


14 CUSTOMER SUPPORT<br />

<strong>Tecan</strong> Journal 2005<br />

Just a<br />

friendly<br />

phone<br />

call away


Laurent Nussbaumer is Supporting Engineer at<br />

Syngenta’s Crop Protection Research facilities<br />

based in Basel and Stein in Switzerland.<br />

Mr Nussbaumer is responsible for equipment at<br />

both sites and has worked with <strong>Tecan</strong> on several<br />

projects over a period of seven years.<br />

What is the main role of your research<br />

facilities?<br />

As a whole, the Crop Protection Research<br />

Facilities are responsible for investigating<br />

chemicals that have the potential to<br />

protect crops, mainly fungicides,<br />

insecticides and herbicides. The site in<br />

Basel is essentially a dispensary, where all<br />

the research compounds are stored,<br />

prepared into solution and pipetted by<br />

<strong>Tecan</strong> systems into reaction microplates.<br />

These plates are then transferred to the<br />

facility in Stein where we perform a<br />

range of preliminary and validatory tests,<br />

also using <strong>Tecan</strong> systems, on the<br />

chemicals themselves, and on the effects<br />

they have on plants in different<br />

formulations and concentrations.<br />

What level of sample throughput are you<br />

achieving?<br />

At the moment our throughput is around<br />

200-300 compounds per week, not what<br />

I would call high throughput at all, but<br />

we are performing numerous tests at<br />

many different concentrations with each<br />

individual compound.<br />

What <strong>Tecan</strong> equipment do you have and<br />

how long have you been using it?<br />

We have been using <strong>Tecan</strong> equipment<br />

since we started operations seven years<br />

ago. At the Basel site, we have two<br />

GENESIS RSPs with liquid handling (LiHa)<br />

arms on each for pipetting. A Freedom<br />

EVO and carousel handle the plates so<br />

the process is completely automated. In<br />

Stein we have GENESIS RSPs equipped<br />

with LiHa and robotic manipulator<br />

(RoMa) arms, carousels and specially<br />

adapted needles that spray the<br />

chemicals onto the plants.<br />

Did <strong>Tecan</strong> provide you with application<br />

support to set up these processes?<br />

Yes, we have had application support<br />

from the beginning. At first, our<br />

equipment was set up for high<br />

throughput screening but every time we<br />

have a new project or change the process<br />

we have needed to adapt the equipment.<br />

Sometimes we can make the changes<br />

ourselves, but if we need instrument<br />

upgrades or other alterations we always<br />

directly involve <strong>Tecan</strong>.<br />

And how do you rate <strong>Tecan</strong>’s customer<br />

service?<br />

Very good! First and foremost, the<br />

equipment is generally very reliable.<br />

However, whenever there is a problem, the<br />

<strong>Tecan</strong> engineers guide us through some<br />

general checks so that they can fully<br />

analyse the problem and advise whether<br />

there is some way we can resolve the<br />

problem ourselves. If not, they are with us<br />

within 24 hours or if possible, because we<br />

are quite close, within 3 hours. <strong>Tecan</strong>’s good<br />

customer service is very important to us.<br />

CUSTOMER SUPPORT<br />

<strong>Tecan</strong> Customer<br />

Support<br />

Whether the customer needs<br />

assistance in reliable automation,<br />

precise and safe liquid handling, or<br />

maintenance and operation of robotics<br />

and detection products, services are<br />

in place to assist the customer at all<br />

levels of activity. In this way, <strong>Tecan</strong> is<br />

able to offer the expertise necessary<br />

to ensure professional use and<br />

high-performance operation of<br />

<strong>Tecan</strong> equipment.<br />

<strong>Tecan</strong> Journal, Customer Magazine of <strong>Tecan</strong> Trading AG., ISSN 1660-5276<br />

Design: OTM/London www.otmcreate.com<br />

Photography: Marc Wetli/Zürich www.wetli.com, Günter Bolzern/Zürich www.bolzern.net<br />

Editor: kdm/UK www.kdm-communications.com<br />

Print: DAZ Druckerei Albisrieden AG/Zurich www.daz.ch<br />

Address: <strong>Tecan</strong> Switzerland AG, Marketing Communication, Seestrasse 103, CH-8708 Männedorf, journal@tecan.com, www.tecan.com<br />

©2005, <strong>Tecan</strong> Trading AG, Switzerland, all rights reserved<br />

<strong>Tecan</strong> Journal 1/2005<br />

15


16 GLOBAL NEWS<br />

Conferences and trade shows 2005 preview<br />

Europe<br />

SBS Geneva September 11-15 2005<br />

Biotech Forum and Scanlab Stockholm October 10-12 2005<br />

Biotechnica Hannover October 18-20 2005<br />

JIB – Journées Internationales de Biologie Paris November 3-5 2005<br />

International Biotech and Lab Automation Europe London November 15-16 2005<br />

Medica Düsseldorf November 16-19 2005<br />

Expoquimia Barcelona November 14-18 2005<br />

Japan<br />

The 5th Protein Science Society of Japan Annual Meeting Fukuoka June 30-July 2 2005<br />

The Japan Society for Clinical Laboratory Automation Yokohama September 28-30 2005<br />

The 28th Annual Meeting of Molecular Biology Society of Japan Fukuoka December 7-10 2005<br />

USA<br />

AACC Orlando, FL July 24-28 2005<br />

Drug Discovery Boston, MA August 7-12 2005<br />

Chips to Hits Boston, MA September 12-15 2005<br />

International Symposium on Human Identification (Promega) Grapevine, Texas September 26-29 2005<br />

Neuroscience Washington, DC November 12-16 2005<br />

ASHG Salt Lake City, Utah October 26-29 2005<br />

AABB Seattle, WA October 16-18 2005<br />

Cell Biology (ASCB) San Francisco December 10-14 2005<br />

Australia<br />

2. ComBIO 2005 Adelaide September 25-29 2005<br />

Asian Pacific Congress of Clinical Biochemistry Brisbane September 14-18 2005<br />

Austria +43 62 46 89 33 Belgium +32 15 42 13 19 China +86 10 586 95 936 Denmark +45 70 23 44 50 France +33 4 72 76 04 80 Germany +49 79 51 94 170<br />

Italy +39 02 215 21 28 Japan +81 42 334 88 55 Netherlands +31 18 34 48 17 4 Portugal +351 21 000 82 16 Singapore +65 644 41 886 Spain +34 93 490 01 74<br />

Sweden +46 31 75 44 000 Switzerland +41 44 922 89 22 UK +44 118 9300 300 USA +1 919 361 5200 Other +43 62 46 89 33<br />

<strong>Tecan</strong> Journal 1/2005 www.tecan.com

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