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<strong>Tecan</strong> Journal<br />
Edition 1 2005<br />
ISSN 1660-5276<br />
Cellerity meets customer needs for<br />
automated cell culture<br />
page 6<br />
HS 400 Hybridization Station makes<br />
light work of genomic DNA patterns<br />
page 8<br />
Talk to <strong>Tecan</strong>’s Customer Support<br />
page 14
2 GLOBAL NEWS<br />
Welcome to the<br />
“new look” <strong>Tecan</strong> Journal<br />
Barbara Stobbe and Mark Wang<br />
<strong>Tecan</strong> Journal 1/2005<br />
Thomas Bachmann<br />
Chief Executive Officer<br />
(CEO)<br />
Firstly, we would like to take this<br />
opportunity to introduce Thomas<br />
Bachmann, who joined <strong>Tecan</strong> in February<br />
2005 as the new CEO. Thomas brings a<br />
wealth of experience in international<br />
senior management to his new role and<br />
will be focusing his efforts on employees,<br />
customers and investors alike.<br />
“My strong personal<br />
commitment to <strong>Tecan</strong> is<br />
to continue developing<br />
excellent relationships<br />
with our customers and<br />
partners, and to maintain<br />
their confidence and<br />
trust. We will focus on issues that are<br />
important to our customers<br />
and aim to win the respect<br />
of the life science, diagnostic<br />
and pharmaceutical worlds<br />
by consistently providing<br />
the solutions and support<br />
they need.”<br />
Training Mark Wang at <strong>Tecan</strong> Switzerland and Austria<br />
Our presence in the Asia-Pacific region<br />
has been boosted by the opening<br />
of the <strong>Tecan</strong> office in Beijing. Our new<br />
<strong>Tecan</strong> representatives are Mark Wang<br />
(mark.wang@tecan.com) and Barbara<br />
Stobbe (barbara.stobbe@tecan.com).<br />
Distributors in this region recently met at<br />
the Asia Pacific Distributor Sales Meeting<br />
2005 in Bangkok. The meeting was<br />
hosted by Marco Vittoz, Director Sales<br />
International, and attended by more than<br />
20 members of <strong>Tecan</strong> South East Asia<br />
(SEA) distributors and <strong>Tecan</strong> representatives<br />
from China and (SEA), as well as<br />
new area managers for India and New<br />
Zealand. During the meeting, information<br />
was shared between <strong>Tecan</strong> and the<br />
distributors on a personal basis and<br />
<strong>Tecan</strong>’s sales and support strategy in the<br />
Asia Pacific market was discussed.<br />
Asia Pacific Distributor Sales Meeting 2005 in Bangkok
The <strong>Tecan</strong> OEM components division in<br />
California’s Silicon Valley has been<br />
manufacturing OEM instrument<br />
components under the Cavro® brand for<br />
more than 30 years. We work directly<br />
with other companies, giving them<br />
access to our products and collaborating<br />
with R&D, sales and service organizations<br />
to develop and commercialize validated,<br />
automated solutions.<br />
Many leading laboratory instrument<br />
manufacturers already place their trust in<br />
<strong>Tecan</strong>’s Cavro OEM components for the<br />
critical functions of precision liquid<br />
handling and robotics and, as well as<br />
relying on our product performance and<br />
reliability, they also benefit from <strong>Tecan</strong>’s<br />
ISO 13485 quality system and QSR<br />
compliance.<br />
The RSP 9000 is an XYZ robotic module.<br />
It is the perfect base unit to automate<br />
OEM liquid handling applications<br />
Detection<br />
Taking microarrays by storm<br />
<strong>Tecan</strong> teams up with Novartis to create<br />
an impressive new microarray technology<br />
with the potential for use in novel<br />
applications page 4<br />
Application Biopharma<br />
Cellerity TM meets customer needs for<br />
automated cell culture<br />
Cellerity, <strong>Tecan</strong>’s new fully automated<br />
system for cell line growth and<br />
maintenance, promises to be the most<br />
affordable, compact and flexible<br />
instrument of its kind page 6<br />
Detection/Application Biopharma<br />
HS 400TM Hybridization Station makes<br />
light work of genomic DNA patterns<br />
The HS 400 is used to investigate<br />
molecular changes along different<br />
pathways in hereditary non-polyposis<br />
colorectal cancer page 8<br />
<strong>Tecan</strong> prepares launch of new hybridization<br />
stations<br />
HS 400 Pro and HS 4800 Pro further<br />
enhance quality page 9<br />
CONTENTS<br />
Application Biopharma<br />
New developments for automation in<br />
proteomic research<br />
A robust sample preparation protocol for<br />
MALDI-TOF MS analysis of tryptic peptide<br />
extracts using the <strong>Tecan</strong> TeMO-96<br />
pipetting robot page 10<br />
Detection<br />
GENios Pro TM – the multi-functional<br />
reader proves a hit for multiplexing<br />
<strong>Tecan</strong>’s multi-functional microplate reader<br />
is used to multiplex HeLa cell-based<br />
viability and apoptosis assays page 12<br />
“<strong>Tecan</strong>’s good customer service is very<br />
important to us”<br />
A long-standing customer backs <strong>Tecan</strong>’s<br />
continuing commitment to customer<br />
service page 14<br />
Events<br />
Calendar Come and meet <strong>Tecan</strong> at<br />
conferences and meetings around the<br />
world in 2005<br />
page 16<br />
<strong>Tecan</strong> Journal 1/2005<br />
3
4 GLOBAL DETECTION NEWS<br />
Taking microarrays by storm<br />
A recent collaboration between <strong>Tecan</strong> and<br />
Novartis Pharma AG in Basel has produced a new<br />
highly sensitive microarray technology that has<br />
the potential to open up new applications and<br />
capabilities for the pharmaceutical industry.<br />
Developed by the Custom Microarray<br />
Laboratory at Novartis, Evanescent<br />
Resonator (ER) technology produces a<br />
signal from fluorescence-based<br />
microarray analyses that is up to a<br />
hundred times greater than that from<br />
traditional, passive glass slides. This means<br />
that less sample material is required to<br />
give a strong signal, and there is a better<br />
signal-to-noise ratio so that even<br />
samples with extremely small<br />
concentrations can be analyzed. The<br />
secret of this heightened sensitivity lies<br />
in the optical configuration of the<br />
microarray platform, the NovaChip.<br />
The surface area built into the<br />
submicrometer region produces an<br />
interference effect for incident light<br />
and has the effect of inducing<br />
stronger resonance. At the same time,<br />
the excitation energy is restricted to the<br />
ultra-thin dielectric layer and this is the<br />
<strong>Tecan</strong> Journal 1/2005<br />
principle behind the evanescent<br />
resonator. The restriction of the (laser)<br />
energy to the thin surface layer<br />
generates enormous electromagnetic<br />
force. These so-called evanescent fields<br />
strengthen the fluorescence signal of<br />
molecules bonded to the surface and<br />
create a clear demarcation between that<br />
area and the background fluorescence.<br />
However, to take advantage of the<br />
fluorescence strengthening effect of the<br />
ER principle, it is necessary to adjust the<br />
angle of incidence of the excitation beam.<br />
The instruments in the LS Laser Scanner<br />
series from <strong>Tecan</strong> are the only commercial<br />
microarray scanners available that offer<br />
this option and, just as importantly, give<br />
highly reproducible results with<br />
maximum precision*. The LS 200 has<br />
been in daily use at Novartis since 2002<br />
and was chosen, not only for the<br />
LS Reloaded & Connect for microarray<br />
batch scanning<br />
adjustable angle, but also because of the<br />
variety of measuring modes it offers.<br />
A particular advantage of the new<br />
technology is the ability to check the<br />
application of the probe sample, whether<br />
DNA, oligonucleotides or proteins etc.,<br />
to the slides. Even if the application<br />
procedure is of the highest quality, with<br />
such a large number of spots there will<br />
inevitably be some left without probe<br />
sample and it is important to register<br />
these positions before the actual<br />
experiment in order to avoid false<br />
negative results. With the LS 200 in<br />
scatter mode, the buffer residues which<br />
form on each spot when the probe fluid<br />
has been successfully applied can be<br />
detected as salt crystals without<br />
compromising the array. The LS 200 is<br />
also completely compatible with a closed<br />
stacking device, Connect and so this<br />
checking stage can easily be carried out<br />
overnight, processing batches of up to<br />
200 slides, four at a time.<br />
To take full advantage of the NovaChip<br />
technology, the quality and<br />
reproducibility of hybridization is also<br />
crucial and for this the Novartis team<br />
also turned to <strong>Tecan</strong>. <strong>Tecan</strong>’s HS 4800<br />
Hybridization Station is completely
HS 4800 for 48 slides processing<br />
automatic, from pre-hybridization to<br />
drying the slides and, as there is no<br />
manual intervention of any sort, it is<br />
practically impossible for the array to<br />
become contaminated. The small sample<br />
volumes and active mixing of the sample<br />
during hybridization also help to achieve<br />
maximum sensitivity. There is currently<br />
no comparable hybridization instrument<br />
which offers all these features with the<br />
additional benefit of flexibility of<br />
throughput for up to 48 slides per run.<br />
For the Novartis program, the HS 4800<br />
is set up in the afternoon with up to<br />
24 microarray slides loaded with the<br />
fluorescence-marked samples and left to<br />
run overnight. Integrated automated<br />
drying of slides with nitrogen protects<br />
fluorescence labels from oxidization until<br />
they are measured next morning using<br />
LS 200 with Connect stacker.<br />
The data are then automatically analyzed<br />
using Array-Pro® Analyzer Software from<br />
Media Cybernetics based in Silver Spring,<br />
MD, USA. This software takes away any<br />
chance of operator variability by means<br />
of the patented fixing of the spot<br />
localization to the exact pixel and<br />
automation of the computer algorithms.<br />
More spots and genes are detectable by ER scanning<br />
DETECTION<br />
The calculation is carried out within<br />
seconds and is therefore ideally suited<br />
to high throughput, fully automated<br />
methods such as this.<br />
The new technology has proven to be<br />
extremely flexible and can be used for<br />
any kind of single or dual color array<br />
application, with standard 3 x 1 inch<br />
microarray glass slides as well as other<br />
glass dimensions and chip formats. In<br />
summary, the NovaChip provides an<br />
excellent solution for extending the<br />
applications of microarray technology<br />
and, at the same time, reduces the<br />
number of steps in sample preparation.<br />
*The LS Reloaded, available since late 2004, has<br />
three times the sensitivity at 532 nm excitation<br />
wavelength and twice the sensitivity at 633 nm<br />
excitation wavelength of the LS 200 used by Novartis.<br />
Signal to background ratio on NovaChip depends on excitation angle<br />
5
6 APPLICATION BIOPHARMA<br />
Cellerity TM meets customer needs<br />
for automated cell culture<br />
The launch of<br />
Cellerity TM , <strong>Tecan</strong>’s<br />
dedicated system<br />
for automated cell<br />
culture, was met<br />
with resounding<br />
enthusiasm at the<br />
Lab Automation<br />
2005 show in San<br />
José, California, this<br />
past February.<br />
Delegates visiting the <strong>Tecan</strong> stand and<br />
guests at a specially held seminar were<br />
thrilled to see Cellerity in action and all<br />
signs show that it promises to be the<br />
most affordable, compact and flexible<br />
instrument on the market for cell culture<br />
and maintenance. The new system can<br />
be relied upon to automate all standard<br />
cell culture processes such as passaging,<br />
splitting, counting and plating. It can<br />
simultaneously grow different cell lines<br />
and maintain them in parallel.<br />
Cellerity is the latest product to result<br />
from <strong>Tecan</strong> working together with<br />
<strong>Tecan</strong> Journal 1/2005<br />
The pierceable cap of the Corning RoboFlask vessel helps maintain a sealed environment during<br />
media exchange. It can be removed for manual access.<br />
partner companies who are leaders<br />
in their own particular fields. In the<br />
development of Cellerity and its<br />
corresponding consumables, <strong>Tecan</strong>,<br />
Corning® and Invitrogen GIBCO® have<br />
directly responded to the needs of<br />
laboratories faced with the constant<br />
demand for a reliable, timely and<br />
consistent supply of high-quality cells.<br />
Cellerity is based on the Freedom EVO®<br />
200 platform with an eight-tip liquid<br />
handling arm (LiHa) which has four<br />
channels for handling cells and four for<br />
adding sterile liquids such as media,<br />
additives or buffers. An integrated robotic<br />
manipulator (RoMa) arm transports<br />
plates and flasks around the workspace.<br />
The RoMa directly accesses all pipetting<br />
stations, incubators, storage devices and<br />
other modules. The system can handle<br />
automation-friendly cell culture flasks. All<br />
pipetting and cell manipulation steps are<br />
performed within a laminar flow sterile<br />
hood or optionally a class II biosafety<br />
cabinet. The robotic incubator controls<br />
CO2, temperature and relative humidity<br />
and can hold up to 1000 of both flasks<br />
and assay plates. CellGEM, the new<br />
Cellerity control software for Cell Growth,
Expansion and Maintenance, is an<br />
intuitive software interface that guides<br />
users through the process of initiating a<br />
cell line expansion request. A calendarstyle<br />
interface allows easy selection of<br />
the dates upon which cells are required<br />
for delivery. The CellGEM scheduling<br />
software calculates the optimal times for<br />
splitting, harvesting, and plating and<br />
then instructs the instrument to perform<br />
those actions automatically. The software<br />
maintains a record of the cells grown in<br />
the system, including growth rates and<br />
passage number. Additionally, CellGEM<br />
keeps track of current volumes of media<br />
and consumables available in the system<br />
and warns users of depleting resources.<br />
The whole system can even be left<br />
unattended over a weekend with<br />
instructions to produce cells ready for<br />
Monday morning, effectively providing<br />
the laboratory with an extra two working<br />
days. Bar coding of the flasks means that<br />
the system knows exactly which protocol<br />
to apply to each flask.<br />
Standard T-flasks for cell culture are<br />
not automation-friendly and require<br />
expensive industrial equipment to<br />
manipulate them between stages for<br />
storage, decapping and incubating. To<br />
address this problem, <strong>Tecan</strong> has worked<br />
closely with the Life Sciences Division of<br />
Corning Inc. to develop the automationfriendly<br />
RoboFlask vessel for Cellerity,<br />
designed to meet standard microplate<br />
dimensions. These flasks can also be<br />
handled by other existing <strong>Tecan</strong> hardware<br />
and can be stored in instruments<br />
designed to hold microplates, such as<br />
incubators, stackers and carousels.<br />
The RoboFlask vessel has been validated<br />
for the successful growth of many<br />
different common and rare cell lines, of<br />
human and other mammalian origin.<br />
With a smaller footprint than a regular<br />
75 cm 2 flask, the RoboFlask vessel has a<br />
cell growth surface area of 92.6 cm 2 ,<br />
allowing the growth of approximately<br />
10 7 cells per flask. The flask cap contains a<br />
septum that can be pierced by the LiHa<br />
numerous times without compromising<br />
the flask’s sterility because the cap is<br />
sterilized with ethanol prior to each<br />
piercing and otherwise remains closed.<br />
Each flask is fitted with a vent with a<br />
large hydrophobic gas permeable<br />
membrane for aeration and pressure<br />
exchange.<br />
A high speed AutoLoader stores empty<br />
RoboFlask vessels and transfers them<br />
directly onto a device designed for access<br />
by liquid handling tips, and for shaking<br />
and knocking of flasks to harvest cells.<br />
Harvested cells may be pumped into<br />
Corning’s ProCulture® spinner flasks,<br />
where cell suspensions are diluted as<br />
necessary for plating or seeding of new<br />
flasks, based on the measurement of an<br />
Innovatis Cedex cell counter. Cellerity has<br />
been designed to accommodate GIBCO<br />
cell culture media and reagents providing<br />
Cellerity customers with high-quality<br />
cell culture products efficiently and<br />
affordably. A large refrigerator unit on<br />
Cellerity holds up to eight bulk GIBCO<br />
media bags whose contents can be<br />
warmed by an on-line heater to the<br />
appropriate temperature immediately<br />
before dispensing. The connection<br />
between Cellerity’s liquid handling<br />
system and GIBCO disposable media<br />
bags has been designed to minimize the<br />
risks of contamination. Liquids such as<br />
cell dissociation products (eg, Trypsin,<br />
TrypLE Express) or transfection reagents<br />
(eg, Lipofectamine) which are used in<br />
smaller volumes can be kept in cooled or<br />
heated containers on the Freedom EVO<br />
deck, where they can be directly accessed<br />
by the LiHa.<br />
APPLICATION BIOPHARMA<br />
<strong>Tecan</strong>’s fully automated system for cell<br />
line growth and maintenance will greatly<br />
benefit cell culture laboratories. The<br />
system ensures improved quality of cells<br />
for a wide range of applications and frees<br />
up laboratory personnel for other<br />
research activities.<br />
Gentle shaking of cell culture flasks<br />
The robot-friendly flasks are compatible with<br />
many <strong>Tecan</strong> automation options including the<br />
RoMa arm on the Freedom EVO and the<br />
AutoLoader<br />
<strong>Tecan</strong> Journal 1/2005<br />
7
8 DETECTION/APPLICATION BIOPHARMA<br />
HS 400 TM Hybridization Station makes<br />
light work of genomic DNA patterns<br />
Hereditary non-polyposis colorectal cancer<br />
(HNPCC) is a familial syndrome that gives a<br />
much higher risk of developing colon<br />
cancer and accounts for 2-5 % of all cases.<br />
Two different molecular pathways are<br />
thought to be involved in the development<br />
of this disease, one being punctual<br />
alterations of the DNA, and the other,<br />
chromosomal instabilities in<br />
microsatellites. Dr Wolfgang Dietmaier and<br />
colleagues at the Regensburg University<br />
Clinic in Germany have been using <strong>Tecan</strong>’s<br />
HS 400 Hybridization Station to compare<br />
genome-wide DNA profiles in samples<br />
from these two variants. It has already<br />
been shown that microsatellite-stable<br />
(MSS) and microsatellite-instable (MSI)<br />
tumor variants can be histologically<br />
differentiated and the aim of this study<br />
was to compare the frequency distribution<br />
of individual genes in tumor tissue with<br />
healthy tissue.<br />
DNA was extracted from surgically<br />
removed tumor and normal mucosa<br />
samples and labelled with Cy3® and Cy5®<br />
red fluorescence, respectively. It was then<br />
hybridized against arrays of a defined BAC<br />
library of healthy samples, consisting of 32<br />
blocks (4 x 8 blocks), each approximately<br />
640 spots, dried on slides. This allowed<br />
direct comparison of the DNA copy<br />
numbers of the pathological and healthy<br />
samples, where DNA gains in a defined<br />
locus in the tumor DNA were represented<br />
by red spots, and DNA losses were<br />
represented by green spots. If the tumor<br />
DNA was present in equal amounts to that<br />
in the normal mucosa (i.e. a healthy ratio),<br />
then the two labels neutralized each other<br />
to an orange colour.<br />
The HS 400 Hybridization Station made<br />
the procedure extremely simple. The arrays<br />
<strong>Tecan</strong> Journal 1/2005<br />
were placed in the special slide holder and<br />
the carrier was then inserted into the<br />
instrument in dry form. The entire method<br />
was carried out in stages – pre-washing,<br />
insertion of the hybridization sample,<br />
hybridization, four washing steps and,<br />
finally, drying with nitrogen – and the<br />
individual times, temperatures and buffers<br />
for each stage were optimized for this<br />
particular application.<br />
This application highlighted a number of<br />
advantages that the HS 400 has over other<br />
hybridization stations, many of which<br />
concentrate on minimizing the risk of<br />
contamination and other artifacts at<br />
different stages throughout hybridization.<br />
The entirely automated process takes place<br />
in the unique four microarray slide holder<br />
including the final drying step, which<br />
means that the arrays are dry when they<br />
enter and leave the instrument and do not<br />
need to be handled throughout the<br />
hybridization.<br />
Cy3 and Cy5 are registered trademarks of Amersham, Inc.<br />
Figure 1: Example of one block of the<br />
microarray used for profiling of<br />
hereditary non-polyposis colorectal<br />
cancer (HNPCC). Automated<br />
processing in <strong>Tecan</strong>’s HS 400 leads to<br />
fewer background artifacts, higher<br />
sensitivity and specificity compared<br />
to other procedures.
<strong>Tecan</strong> prepares launch of<br />
new hybridization stations<br />
HS 400 Pro and<br />
HS 4800 Pro further<br />
enhance quality, reproducibility<br />
and application<br />
flexibility for microarray<br />
hybridizations<br />
<strong>Tecan</strong>’s HS Series of hybridization stations<br />
are well proven tools to automate a<br />
variety of microarray applications, including<br />
DNA and protein arrays, and in situ<br />
hybridization.<br />
The new HS 400 Pro and HS 4800 Pro<br />
contain <strong>Tecan</strong>’s unique ABS (Active Bubble<br />
Suppression) system, which prevents<br />
formation of bubbles within the chambers,<br />
eliminating hybridization artifacts and<br />
enhancing consistency of results. Novel<br />
dual chambers are easily interchangeable<br />
with single area chambers and enable<br />
the new systems to fully automate the<br />
processing of two independent subarrays<br />
per slide with no risk of carry-over.<br />
HS 400 Pro TM and HS 4800 Pro TM<br />
share the benefits of <strong>Tecan</strong>’s<br />
existing hybridization systems:<br />
DETECTION/APPLICATION BIOPHARMA<br />
• Fully automated hybridization – from<br />
pre-hybridization to automated slide<br />
drying<br />
• Less background, fewer artifacts,<br />
higher sensitivity<br />
• Designed to maximize reproducibility<br />
and reliability of results<br />
• Easy to use, low maintenance<br />
• Low volume hybridization chambers<br />
save precious samples<br />
• Two models can handle a variety of<br />
throughputs<br />
New products<br />
<strong>Tecan</strong> Journal 1/2005<br />
9
10 APPLICATION BIOPHARMA<br />
New developments for automation<br />
in proteomic research:<br />
MALDI sample preparation<br />
for high throughput peptide<br />
mass fingerprinting<br />
Matrix-Assisted Laser Desorption Ionization<br />
Time-of-Flight (MALDI-TOF) mass spectrometry<br />
(MS) is a key technique for the<br />
analysis of proteins and peptides in proteomic<br />
research. It can be used to analyze<br />
molecules over a wide molecular weight<br />
range from a few hundred daltons up to<br />
300kDa with very high accuracy and with<br />
detection sensitivities in the low fmol<br />
range. It is very useful in peptide mass<br />
fingerprint analysis of large proteins.<br />
Sample preparation and the preparation<br />
of an appropriate analyte/matrix mixture<br />
are critical limiting factors in MALDI-TOF<br />
mass spectrometric analysis. To achieve<br />
high sensitivity, impurities such as salts<br />
and buffer components must be washed<br />
away efficiently with minimal loss of<br />
analytes.<br />
Figure 1: MALDI sample preparation<br />
performed on a <strong>Tecan</strong> Genesis Workstation<br />
with a TeMO-96 multi-pipetting unit<br />
<strong>Tecan</strong> Journal 1/2005<br />
The two experiments described below<br />
evaluate a robust sample preparation<br />
protocol for MALDI-TOF MS analysis of<br />
tryptic peptide extracts using the <strong>Tecan</strong><br />
TeMO-96 pipetting robot (Figure 1), which<br />
aims to make MALDI-TOF more accessible<br />
for high throughput applications.<br />
Method<br />
Our sample preparation is based on the<br />
α-cyano-4-hydroxycinnamic acid (CHCA)<br />
affinity preparation method (Gobom et<br />
al. (2001), Anal. Chem. 73, 434-438) in<br />
which the tryptic peptide extracts are<br />
applied onto a pre-structured anchor<br />
MALDI sample plate (Scout-MTP 384/600<br />
AnchorChip; Bruker Daltonics, Bremen,<br />
Germany) prepared with a thin layer of<br />
the MALDI matrix CHCA. The TeMO<br />
worktable accommodates eight 96-well<br />
microtiter plates with peptide samples<br />
and two MALDI sample plates, each with<br />
384 sample positions. The TeMO-96<br />
pipetting head transfers 1 µL of each<br />
peptide sample from the microtiter<br />
plates to the MALDI sample plate where<br />
the droplets are allowed to dry. New racks<br />
of disposable pipette tips are delivered by<br />
the <strong>Tecan</strong> TeStack for each set of 96<br />
tryptic extracts to avoid sample cross<br />
contamination. After the tryptic digest<br />
samples have dried, contaminants are<br />
washed away by dispensing 3 µL droplets<br />
of 0.1 % trifluoroacetic acid (TFA) onto the<br />
sample, followed by aspiration of the<br />
droplet after three seconds. Between<br />
washing of different sample spots, the<br />
pipette tips were rinsed using the <strong>Tecan</strong><br />
washing station in a multi-step<br />
procedure included in the MALDI sample<br />
washing procedure. After emptying the<br />
tips, two cleaner steps with 90 µL MilliQ<br />
water each were employed, with soak<br />
Dr. Niklas Gustavsson*, Dr. Dieter Weichart,<br />
Dr. Johan Gobom, Max Planck Institute for<br />
Molecular Genetics, Berlin<br />
*now based at the Mass Spectrometry group,<br />
Dept of Plant Biochemistry, Lund University, Sweden<br />
times of 1 second and flow through set at<br />
80. The first step included three cycles,<br />
with change of 5 µL each, and the second<br />
step included two cycles without change.<br />
Controlling carry-over during MALDI<br />
sample plate preparation<br />
The consumption of pipette tips during<br />
washing of sample spots on the MALDI<br />
sample plates can be minimized by using<br />
the same set of tips for washing of all<br />
samples on an entire sample plate, as<br />
long as the pipette tips can be rinsed<br />
sufficiently between washing of different<br />
sample spots on the MALDI sample plate.<br />
The efficiency of the pipette tip washing<br />
procedure was tested by preparing a set<br />
of three single peptides on adjacent<br />
sample spots on the MALDI sample plate<br />
(Figure 2), followed by washing the whole<br />
sample plate with one set of pipette tips.<br />
Angiotensin I, neurotensin and ACTH 18-<br />
39 were added onto quadrant Q1, Q2 and<br />
Q3 respectively. Nothing was added to<br />
quadrant Q4. The four quadrants were<br />
washed using the previously mentioned<br />
protocol with two cycles of 3 µL of 0.1 %<br />
TFA each. As shown in the MALDI-TOF<br />
mass spectra in Figure 2, no carry-over of<br />
the peptide prepared on the previous<br />
sample spot could be detected on the<br />
following spot. None of the peptides<br />
prepared on quadrants Q1 to Q3 were<br />
detected in the mass spectrum from<br />
quadrant Q4. The preparation of the<br />
three single peptides was performed in 32<br />
parallel sets, with no carry-over detected<br />
in any of the mass spectra.<br />
Assessing reproducibility of<br />
preparation for MALDI-TOF MS<br />
The reproducibility of the automatic<br />
sample application and MALDI sample
plate washing procedures was tested by<br />
preparing the same set of 368 tryptic<br />
digests of human proteins excised from a<br />
two-dimensional gel onto two MALDI<br />
sample plates. The plates were processed<br />
in parallel, and spectra were acquired<br />
under identical conditions on an Ultraflex<br />
LIFT mass spectrometer (Bruker Daltonics,<br />
Bremen, Germany). Using the MASCOT<br />
software, the peptide mass fingerprint<br />
data were submitted to a database<br />
search in the Swiss protein database<br />
(http://www.expasy.org/sprot/),<br />
considering scores larger than 62<br />
indicative of reliable identification<br />
(p
12 DETECTION<br />
GENios Pro TM<br />
– the multi-functional reader<br />
proves a hit for multiplexing<br />
Multiplexing assays for any applications offer a range of benefits over<br />
standard assays. In addition to being amenable to high throughput, they<br />
also allow the measurement and analysis of more than one parameter<br />
simultaneously and save time and money by conserving precious compounds<br />
and cell culture reagents.<br />
However, for multiplexing to really work,<br />
there is the challenge of developing<br />
homogenous assays that do not require<br />
washing and sample handling steps,<br />
and the requirement of excellent<br />
performance, flexibility and multifunctionality<br />
from the detection<br />
instrument used.<br />
Prof. Dr. Gadek-Wesierski and her research<br />
team at the Medical University of Vienna<br />
have shown that the GENios Pro multifunctional<br />
microplate reader from <strong>Tecan</strong><br />
meets all these criteria and has a number<br />
of features such as individual optics<br />
for all reading modes that make it<br />
particularly suitable for multiplexing of<br />
cell-based assays with various readouts .<br />
The team in Vienna aimed to multiplex<br />
two cell-based assays having fluorescent<br />
<strong>Tecan</strong> Journal 1/2005<br />
and luminescent output to obtain<br />
information regarding viability and<br />
apoptosis directly from the same sample<br />
well, using Cisplatin (CP) as a test<br />
substance for treating HeLa cells. CP is a<br />
widespread anticancer drug used for<br />
chemotherapy. It inhibits viability and<br />
proliferation and induces apoptosis in<br />
human cervical carcinoma cells (see<br />
Figure 1).<br />
In the experiment, HeLa cells S3 were<br />
cultured in 96-well plates and treated<br />
with increasing concentrations of CP, the<br />
CellTiter-Blue® Cell Viability Assay from<br />
Promega was used to calculate viability.<br />
This assay determines the number of<br />
metabolically active cells based on the<br />
direct addition of resazurin to cells in a<br />
culture medium, which is then converted<br />
into resorufin by the cells. Measurements<br />
Dr. Gerlinde Zerza-Schnitzhofer,<br />
Dr. Manfred Lansing, Mag. Marieta<br />
Gueorguieva 1 , Mag. Carmen Ranftler<br />
and A.o.Univ. Prof. Dr. Jozefa Gadek-<br />
Wesierski 1<br />
<strong>Tecan</strong> Austria GmbH, Grödig, Austria and<br />
1 Medical University of Vienna, Vienna, Austria<br />
Figure 1: Detection of apoptotic HeLa cells.<br />
Untreated HeLa cells and HeLa cells treated with<br />
40 µM cisplatin (15 hours) were fixed with<br />
methanol and stained with a fluoresceinconjugated<br />
monoclonal mouse antibody<br />
(M30-CytoDeath, Roche, Vienna, Austria). The<br />
CytoDeath antibody is specifically for caspase-3<br />
cleaved cytokeratin-18 and stains cells in various<br />
stages of apoptosis. Cell nuclei were made<br />
visible using DAPI. Mitotic (M) and apoptotic (A)<br />
cells are marked with the following symbol ->.
were taken after the appropriate<br />
incubation period using the GENios Pro<br />
reader (Figure 2). Resorufin is activated at<br />
545 nm and emission is detected at<br />
590 nm. The fluorescence reading can<br />
then be correlated with the number of<br />
metabolically active, living cells, if<br />
appropriate serial dilutions of cells have<br />
been performed accordingly.<br />
In experiments with adherent cells,<br />
excitation and detection through the<br />
bottom of a microplate are preferable to<br />
top reading as this reduces disruptive<br />
influences of the culture medium on the<br />
measurement signal. A preliminary test<br />
with CellTiter-Blue® showed that the<br />
detection limits in bottom reading mode<br />
were between six and eight times lower<br />
than in top reading mode. This means<br />
that fewer cells and materials can be<br />
used to achieve the same results, which is<br />
particularly advantageous for cell-based<br />
applications.<br />
Figure 2: GENios Pro microplate reader. Features<br />
such as rapid fluorescence bottom reading and<br />
reagent addition by injectors make this<br />
multimode reader particularly suitable for a<br />
large number of cell-based assays in HTS.<br />
Figure 3 shows the results of the CellTiter-<br />
Blue® assay after the HeLa cells were<br />
incubated for 24 hours with various<br />
concentrations of CP (0, 1, 5, 20, 40 µM).<br />
As the CP concentration increases, the<br />
number of metabolically active cells is<br />
reduced by approximately 70 %.<br />
Information on the apoptosis rate was<br />
obtained in the multiplex assay using the<br />
Promega Caspase-Glo 3/7 assay to<br />
measure the activity of caspase-3 and -7,<br />
both of which play a key role in the<br />
apoptosis of mammalian cells. Caspase<br />
activity is measured by adding a<br />
preluminescent substrate solution into<br />
Prof. Dr. Gadek-Wesierski and her<br />
research team are based at the<br />
Institute of Cancer Research at the<br />
Medical University of Vienna. The<br />
institute is focused on basic cancer<br />
research, scientific education and the<br />
development of a new understanding<br />
of cancer disease.<br />
The group is studying the mechanisms<br />
of cell cycle regulation during<br />
malignant transformation of cells. The<br />
expression, activation and inhibition of<br />
tumor suppression proteins (eg, p53),<br />
Figure 3: Multiplex analysis of viability and<br />
apoptosis in HeLa cells. Viability was analyzed<br />
using CellTiter-Blue® Assay and apoptosis using<br />
Caspase-Glo 3/7 Assay following incubation of<br />
the cells in 96-well microplates with 0 – 40 µM<br />
cisplatin (CP).<br />
the sample wells containing the CellTiter-<br />
Blue reagents, after having taken the<br />
viability readings. The substrate solution<br />
contains a stabilized luciferase and is<br />
optimized for caspase/luciferase activity<br />
and cell lysis. The substrate solution<br />
destroys the cells, the preluminescent<br />
substrate is cleaved by active caspases<br />
releasing luciferin that is then consumed<br />
by the luciferase. The resulting<br />
luminescent signal is proportional to<br />
caspase activity and can be measured.<br />
The results in Figure 3 show a clear<br />
increase in apoptosis at high CP<br />
concentrations. The number of apoptotic<br />
cells increased in this experiment by<br />
approximately four fold. Correlating the<br />
readings from both the viability and<br />
apoptosis analyses with the number of<br />
cells allows the percentage of apoptotic<br />
cells to be determined.<br />
Summary<br />
Multiplexing is an efficient way of<br />
obtaining more than one set of<br />
experimental data from the same sample<br />
well in order to better understand<br />
CUSTOMER DETECTION<br />
SUPPORT<br />
which play a key role in cycle control, are<br />
investigated in different cell lines and<br />
species. Additionally, the group is studying<br />
the effect of new anti-cancer drugs, in<br />
particular regarding their potential for<br />
reactivating the tumor suppressor protein<br />
p53, which results in enhanced efficiency<br />
of chemotherapy treatment.<br />
http://www.p53parp.at<br />
complex cellular processes. Additionally,<br />
multiplexing offers the advantage of<br />
reducing experimental variation, like<br />
fluctuations in cell numbers due to cell<br />
clumping and dispensing. Homogenous<br />
assays, which require no washing and<br />
separation stages, can easily be<br />
integrated into <strong>Tecan</strong> Robotic systems<br />
with the GENios Pro Reader for use in<br />
high throughput screening. Stages such<br />
as the addition of various assay reagents<br />
by injectors into 96 and 384 well plates,<br />
incubation at 37° C and plate-shaking,<br />
can all be carried out in this modular<br />
reader. The measurement methods<br />
available on the GENios Pro are suitable<br />
for a large number of multiplex assays<br />
and range from absorption and<br />
fluorescence (FI, FRET, TRF) to various<br />
luminescence techniques (BRET2, Glow<br />
and Flash Type Luminescence).<br />
This experiment combined two cell-based<br />
assays in one multiplex experiment but,<br />
using additional assays, e.g. LDH release<br />
or reporter gene assays, the team<br />
believes that multiplexing could easily be<br />
extended to answer further questions.<br />
Acknowledgement<br />
We would like to thank Prof. Dr. Gadek-<br />
Wesierski and her team at the University<br />
of Vienna for providing the data and<br />
Dr. Katarina Bohm and Dr. Heinz Winkler<br />
from Promega for kindly providing the<br />
reagents.<br />
GENios Pro is a trademark of <strong>Tecan</strong> Group Ltd.<br />
Cell Titer-Blue® and Caspase-Glo 3/7 Assays are trademarks<br />
of Promega corporation.<br />
BRET2 is a proprietary technology from BioSignal Packard.<br />
Patents pending.<br />
<strong>Tecan</strong> Journal 1/2005<br />
13
14 CUSTOMER SUPPORT<br />
<strong>Tecan</strong> Journal 2005<br />
Just a<br />
friendly<br />
phone<br />
call away
Laurent Nussbaumer is Supporting Engineer at<br />
Syngenta’s Crop Protection Research facilities<br />
based in Basel and Stein in Switzerland.<br />
Mr Nussbaumer is responsible for equipment at<br />
both sites and has worked with <strong>Tecan</strong> on several<br />
projects over a period of seven years.<br />
What is the main role of your research<br />
facilities?<br />
As a whole, the Crop Protection Research<br />
Facilities are responsible for investigating<br />
chemicals that have the potential to<br />
protect crops, mainly fungicides,<br />
insecticides and herbicides. The site in<br />
Basel is essentially a dispensary, where all<br />
the research compounds are stored,<br />
prepared into solution and pipetted by<br />
<strong>Tecan</strong> systems into reaction microplates.<br />
These plates are then transferred to the<br />
facility in Stein where we perform a<br />
range of preliminary and validatory tests,<br />
also using <strong>Tecan</strong> systems, on the<br />
chemicals themselves, and on the effects<br />
they have on plants in different<br />
formulations and concentrations.<br />
What level of sample throughput are you<br />
achieving?<br />
At the moment our throughput is around<br />
200-300 compounds per week, not what<br />
I would call high throughput at all, but<br />
we are performing numerous tests at<br />
many different concentrations with each<br />
individual compound.<br />
What <strong>Tecan</strong> equipment do you have and<br />
how long have you been using it?<br />
We have been using <strong>Tecan</strong> equipment<br />
since we started operations seven years<br />
ago. At the Basel site, we have two<br />
GENESIS RSPs with liquid handling (LiHa)<br />
arms on each for pipetting. A Freedom<br />
EVO and carousel handle the plates so<br />
the process is completely automated. In<br />
Stein we have GENESIS RSPs equipped<br />
with LiHa and robotic manipulator<br />
(RoMa) arms, carousels and specially<br />
adapted needles that spray the<br />
chemicals onto the plants.<br />
Did <strong>Tecan</strong> provide you with application<br />
support to set up these processes?<br />
Yes, we have had application support<br />
from the beginning. At first, our<br />
equipment was set up for high<br />
throughput screening but every time we<br />
have a new project or change the process<br />
we have needed to adapt the equipment.<br />
Sometimes we can make the changes<br />
ourselves, but if we need instrument<br />
upgrades or other alterations we always<br />
directly involve <strong>Tecan</strong>.<br />
And how do you rate <strong>Tecan</strong>’s customer<br />
service?<br />
Very good! First and foremost, the<br />
equipment is generally very reliable.<br />
However, whenever there is a problem, the<br />
<strong>Tecan</strong> engineers guide us through some<br />
general checks so that they can fully<br />
analyse the problem and advise whether<br />
there is some way we can resolve the<br />
problem ourselves. If not, they are with us<br />
within 24 hours or if possible, because we<br />
are quite close, within 3 hours. <strong>Tecan</strong>’s good<br />
customer service is very important to us.<br />
CUSTOMER SUPPORT<br />
<strong>Tecan</strong> Customer<br />
Support<br />
Whether the customer needs<br />
assistance in reliable automation,<br />
precise and safe liquid handling, or<br />
maintenance and operation of robotics<br />
and detection products, services are<br />
in place to assist the customer at all<br />
levels of activity. In this way, <strong>Tecan</strong> is<br />
able to offer the expertise necessary<br />
to ensure professional use and<br />
high-performance operation of<br />
<strong>Tecan</strong> equipment.<br />
<strong>Tecan</strong> Journal, Customer Magazine of <strong>Tecan</strong> Trading AG., ISSN 1660-5276<br />
Design: OTM/London www.otmcreate.com<br />
Photography: Marc Wetli/Zürich www.wetli.com, Günter Bolzern/Zürich www.bolzern.net<br />
Editor: kdm/UK www.kdm-communications.com<br />
Print: DAZ Druckerei Albisrieden AG/Zurich www.daz.ch<br />
Address: <strong>Tecan</strong> Switzerland AG, Marketing Communication, Seestrasse 103, CH-8708 Männedorf, journal@tecan.com, www.tecan.com<br />
©2005, <strong>Tecan</strong> Trading AG, Switzerland, all rights reserved<br />
<strong>Tecan</strong> Journal 1/2005<br />
15
16 GLOBAL NEWS<br />
Conferences and trade shows 2005 preview<br />
Europe<br />
SBS Geneva September 11-15 2005<br />
Biotech Forum and Scanlab Stockholm October 10-12 2005<br />
Biotechnica Hannover October 18-20 2005<br />
JIB – Journées Internationales de Biologie Paris November 3-5 2005<br />
International Biotech and Lab Automation Europe London November 15-16 2005<br />
Medica Düsseldorf November 16-19 2005<br />
Expoquimia Barcelona November 14-18 2005<br />
Japan<br />
The 5th Protein Science Society of Japan Annual Meeting Fukuoka June 30-July 2 2005<br />
The Japan Society for Clinical Laboratory Automation Yokohama September 28-30 2005<br />
The 28th Annual Meeting of Molecular Biology Society of Japan Fukuoka December 7-10 2005<br />
USA<br />
AACC Orlando, FL July 24-28 2005<br />
Drug Discovery Boston, MA August 7-12 2005<br />
Chips to Hits Boston, MA September 12-15 2005<br />
International Symposium on Human Identification (Promega) Grapevine, Texas September 26-29 2005<br />
Neuroscience Washington, DC November 12-16 2005<br />
ASHG Salt Lake City, Utah October 26-29 2005<br />
AABB Seattle, WA October 16-18 2005<br />
Cell Biology (ASCB) San Francisco December 10-14 2005<br />
Australia<br />
2. ComBIO 2005 Adelaide September 25-29 2005<br />
Asian Pacific Congress of Clinical Biochemistry Brisbane September 14-18 2005<br />
Austria +43 62 46 89 33 Belgium +32 15 42 13 19 China +86 10 586 95 936 Denmark +45 70 23 44 50 France +33 4 72 76 04 80 Germany +49 79 51 94 170<br />
Italy +39 02 215 21 28 Japan +81 42 334 88 55 Netherlands +31 18 34 48 17 4 Portugal +351 21 000 82 16 Singapore +65 644 41 886 Spain +34 93 490 01 74<br />
Sweden +46 31 75 44 000 Switzerland +41 44 922 89 22 UK +44 118 9300 300 USA +1 919 361 5200 Other +43 62 46 89 33<br />
<strong>Tecan</strong> Journal 1/2005 www.tecan.com