29.04.2013 Views

Thesis (pdf) - Espci

Thesis (pdf) - Espci

Thesis (pdf) - Espci

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

40 3 Self-organization and cooperativity of weakly coupled molecular motors<br />

VN/V 0<br />

1 (0)<br />

1<br />

0.8<br />

0.6<br />

0.4<br />

0.2<br />

0.5<br />

0 5 10 15<br />

N<br />

20 25 30<br />

0<br />

0 0.2 0.4 0.6 0.8 1<br />

F/(NF 0 s )<br />

Fig. 3.12. Convergence with the number of motors N, of velocity vs force per motor, for<br />

α = 0.15 and β = 14.1. Diamond, N = 1; inverted triangle, N = 2; triangle, N = 3; empty<br />

square, N = 5; empty circle, N = 10; solid square, N = 15; solid circle, N = 30. In the inset,<br />

the convergence for a fixed force F0 = 1/3F 0<br />

s<br />

(see Fig. 3.10). Another route to mean field is to impose a soft interacting potential<br />

such that the variation of the force over a ratchet period is negligible,<br />

ℓW ′′ (r)/W ′ (r), which ensures the decoupling of internal and spatial degrees<br />

of freedom between motors. This condition is easily achieved for a (longranged)<br />

interaction of the form W(r) ∼ exp(−r/λ), with λ ≫ ℓ. Adding to<br />

this potential a hard-core part to prevent motor-motor crossing, we end up<br />

with a long range interaction (see Fig. 3.3),<br />

<br />

σ 6 σ 12<br />

4ε −<br />

W(r)= r6 r12 <br />

+ Aλ exp − r<br />

<br />

r ≤ 2<br />

λ<br />

1/6 σ<br />

<br />

Aλ exp − r<br />

<br />

r > 2<br />

λ<br />

1/6 (3.25)<br />

σ,<br />

where the parameter A, sets the intensity force of the long-range potential.<br />

We expect a crossover force between hardcore repulsion and long-range interaction,<br />

if the force provided by the long-range part is not enough to overcome<br />

the force per motor: −W ′ (2 1/6 σ) < F/N. In Fig. 3.13, we show several<br />

plots of the 2-motor velocity-force curves for different long-range intensities<br />

intensity. The transition region from mean field to cooperative behavior<br />

corresponds qualitatively to a cross-over force F ∗ 2A/λ exp(−2 1/6 σ/λ).<br />

Above the cross-over force, the velocity-force curve approaches the hardcore<br />

curve (region in between the top and bottom curve in Fig. 3.13). The gain<br />

in velocity from respect to mean field in this region grows linear with the force<br />

until it reaches the hard-core region, inset of Fig. 3.13, with a slope that is<br />

VN (NF0)/V1(F0)<br />

2.5<br />

2<br />

1.5<br />

1

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!