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Unknown DNA — Rational Primer Design and Analysis — the ...

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product length: 1360<br />

product %GC: 41.1<br />

product Tm: 76.3 degrees Celsius<br />

difference in primer Tm: 1.9 degrees Celsius<br />

annealing score: 58<br />

optimal annealing temperature: 54.8 degrees Celsius<br />

--------------------------------------------------------------------------------<br />

Product: 3<br />

[<strong>DNA</strong>] = 50.000 nM<br />

[salt] = 50.000 mM<br />

PRIMERS<br />

-------<br />

forward primer: forward2<br />

reverse primer: reverse13<br />

5' 3'<br />

forward primer (27-mer): 43 GTTATTGGTCACGTTGATTCAGGTAAG 69<br />

reverse primer (25-mer): 1427 TGCTTCATATCACGAACAGCGAAAC 1403<br />

forward<br />

reverse<br />

primer %GC: 40.7 44.0<br />

primer Tm (degrees Celsius): 54.7 56.5<br />

PRODUCT<br />

-------<br />

product length: 1385<br />

product %GC: 41.2<br />

product Tm: 76.3 degrees Celsius<br />

difference in primer Tm: 1.8 degrees Celsius<br />

annealing score: 59<br />

optimal annealing temperature: 54.9 degrees Celsius<br />

--------------------------------------------------------------------------------<br />

Product: 4<br />

[<strong>DNA</strong>] = 50.000 nM<br />

[salt] = 50.000 mM<br />

PRIMERS<br />

-------<br />

forward primer: forward15<br />

reverse primer: reverse1<br />

5' 3'<br />

forward primer (29-mer): 62 CAGGTAAGTCAACTACTACTGGTCACCTC 90<br />

reverse primer (25-mer): 1420 TATCACGAACAGCGAAACGACCGAG 1396<br />

forward<br />

reverse<br />

primer %GC: 48.3 52.0<br />

primer Tm (degrees Celsius): 57.9 59.4<br />

PRODUCT<br />

-------<br />

product length: 1359<br />

product %GC: 41.2<br />

product Tm: 76.3 degrees Celsius<br />

30

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