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SNP 6.0 GeneChip arrays: Strengths and limitations for copy ...

SNP 6.0 GeneChip arrays: Strengths and limitations for copy ...

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Analysis can further be made complex by<br />

Constitutional CNVs/ segmental duplications<br />

Germ Line<br />

Tumor sample<br />

Chr A Chr B Chr A Chr B<br />

4 copies of marker 2 copies of marker<br />

A deletion on Chr B would also<br />

reflect a heterozygous deletion<br />

on Chr A, even though Chr A is<br />

normal

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