SNP 6.0 GeneChip arrays: Strengths and limitations for copy ...

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SNP 6.0 GeneChip arrays: Strengths and limitations for copy ...

SNP 6.0 GeneChip arrays: Strengths and limitations for copy ...

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Mullighan et al, Nature, 2007<br />

Paulsson et al, PNAS, 2008

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(Wessex) Technology Assessment ChromoQuantâ¢ (version 1)

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Analysis of sequence data in the cancer genome project

Mullighan et al, Nature, 2007 Paulsson et al, PNAS, 2008

Map of UPDs in 450 AML samples Gupta et al, Genes Chromosomes <strong>and</strong> Cancer, 2008 UPD Loss Gain

Page 1 and 2: SNP 6.0 GeneChip arrays: Strengths
Page 3: Affymetrix GeneChip ® arrays Hybri
Page 7 and 8: The 6.0 array - Design PM A MM A PM
Page 9 and 10: 6.0 SNP array results: Chr17 4 2 1
Page 11 and 12: Detection of MLL-PTD in an AML samp
Page 13 and 14: CNVs detected in human genome (Fig:
Page 15 and 16: Limitation I: Overlapping probes co
Page 17 and 18: Replicates increase signal to noise
Page 19 and 20: Limitation II: Probes in repeat ele
Page 21: Acknowledgements Bryan Young Jean