Analysis of Genes for Stigma Coloration in Rice - IRRI books

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Jena K K, Khush G S (1989) Monosomic alien addition lines of rice: production, morphology, cytology, and breeding behavior. Genome 32:449–455. Katayama T (1967) Cytological studies on Oryza. F 1 hybrids of the crosses BBCC × CC, BBCC × a diploid strain of O. punctata and CC × a diploid strain of O. punctata. Proc. Jpn. Acad. 43:327–331. Khush G S, Singh R J, Sur S G, Librojo A L (1984) Primary trisomics of rice: origin, morphology, cytology, and use in linkage mapping. Genetics 107:141–163. Kurata N, Omura T (1978) Karyotype analysis in rice. I. A new method for identifying all chromosome pairs. Jpn. J. Genet. 56:251–255. Levy A A, Braun D, Feldman M (1987) Evaluation of the effect of alien chromosomes on quantitative traits in common wheat. Genome 30:265–268. Nishibayashi S, Kaeriyama J (1986) Structural stability of chromosomes in rice (Oryza sativa L.) plants regenerated from somatic tissue culture. Plant Tissue Cult. Lett. 3:31–34. Riley R, Chapman V (1958) The production and phenotypes of wheat-rye addition lines. Heredity 12:301–315. Savitsky H (1978) Nematode (Heterodera schachtii) resistance and meiosis in diploid plants from interspecific Beta vulgaris × B.procumbens hybrids. Can. J. Genet. Cytol. 20:177–186. Sears E R (1956) The transfer of leaf rust resistance from Agilops umbellulata to wheat. Brookhaven Symp. Biol. 9:l–22. Shin Y B, Katayama T (1979) Cytological studies on the genus Oryza. XI. Alien addition lines of O. sativa with single chromosomes of O. officinalis. Jpn. J. Genet. 54:l–10. Speckmann G J, Debock T S M (1982) The production of alien monosomic additions in Beta vulgaris as a source for the introgression of resistance to beet root nematode (Heterodera schachtii) from Beta species of the section Patellares. Euphytica 31:313–323. Tateoka T (1965) Taxonomy and chromosome numbers of African representatives of the Oryza officinalis complex. Bot. Mag. Tokyo 78:198–201. Thomas H (1968) The addition of single chromosomes of Avena hirtula to the cultivated hexaploid oat A. sativa. Can. J. Genet. Cytol. 10:551–563. Notes Authors’ address: H. Yasui and N. Iwata, Faculty of Agriculture, Kyushu University, Fukuoka 812, Japan. Citation information: International Rice Research Institute (1991) Rice genetics II. P.O. Box 933, Manila, Philippines. Monosomic alien addition lines of oryza sativa 155
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Rice Genetics II Proceedings of the
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Contents Foreword xiii K. J. Lampe
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Thermosensitive genetic male steril
Page 8 and 9:
Intraspecific variation and genetic
Page 10 and 11:
Restriction fragment length polymor
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Simple, rapid procedure for analyzi
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Foreword The First International Ri
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The First International Rice Geneti
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International cooperation in rice g
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Chromosomes were numbered in decrea
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Establishment of the Rice Genetics
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Abbreviations and acronyms A ABA AC
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S SCA = specific combining ability
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Association between Pox-1 variation
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Near-isogenic lines of Pox-1 Ten F
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Table 3. Association between charac
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2. Comparison of character measurem
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Fu P Y, Pai C (1979) Genetic studie
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protein, since a wx mutant (75-1) p
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2. Heterogeneity of Wx proteins (sp
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Altered gene expression As mentione
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Table 3. Distribution of nonwaxy al
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Notes Authors’ addresses: Y. Sano
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designation to “tropical japonica
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Table 2. Pollen and spikelet fertil
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Table 4. Mean similarity indices an
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Root thickness. The upland and aus
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The aus group is also closely relat
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Notes Authors’ addresses: T.T. Ch
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to identify the wide compatibility
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Hybrids between aus varieties Becau
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Genetic analysis of hybrid sterilit
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Table 5. Detection of wide compatib
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Discussion The system of F 1 hybrid
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How was rice differentiated into in
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1. Relations among phenol reaction,
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3. Association of 9 genes and chara
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The pattern of association among th
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Oka H I (1974) Analysis of genes co
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Table 1. Varieties used in crossing
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1. Hierarchical ascendant classific
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three restriction patterns, while a
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Table 4. Distorted F 2 segregations
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explain the correspondence between
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Traditional highland rices originat
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Morphophysiological variability The
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2. Distribution of varieties from M
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Locus Allele Whole sample Indica gr
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For the japonica group, Madagascar
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Thus, rice introduction in Madagasc
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Rabary E, Noyer J L, Benyayer P, Ar
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The spontaneous hybrids were called
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Table 1. Mean outcrossing rates (m)
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Table 3. Comparison of 1) ratios of
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fertility and to eliminate unfavora
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Discussion Session 1: Varietal diff
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Q— Chang : The earliest remains o
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A— Morishima : Since most of the
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Analysis of genes for stigma colora
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Table 1. Varieties used as parents
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Underlying genes in these different
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(121:9, 2 homogeneous crosses poole
Page 138 and 139: Table 6. Linkage relations estimate
Page 140 and 141: Table 9. Recombination values obtai
Page 142 and 143: In this study, inhibitors for stigm
Page 144 and 145: Gene mapping of some morphological
Page 146 and 147: • Liguleless-a. The auricle and l
Page 148 and 149: Table 3. Linkage between sheathed p
Page 150 and 151: Table 6. Linkage between short ligu
Page 152 and 153: 3. Linkage relationships between ne
Page 154 and 155: Linkage relationships between genet
Page 156 and 157: 1. Linkage map of 5 genes including
Page 158: Notes Authors’ addresses: H.S. Su
Page 161 and 162: Table 1. Rice isozyme genes and cor
Page 163 and 164: 10 5 5 8 6 14 18 20 34 15 6.13 (0.5
Page 165 and 166: 1. Linkage maps of 11 isozyme genes
Page 167 and 168: Table 5. Number of variant subcell
Page 169 and 170: Ranjhan S, Glaszmann J C, Ramirez D
Page 171 and 172: environment, have pleiotropic effec
Page 173 and 174: Table 3. Segregation for Enp-1 in B
Page 175 and 176: Linkage relationship between isozym
Page 177 and 178: Table 8. Summary of linkage relatio
Page 180 and 181: Production of monosomic alien addit
Page 182 and 183: 1. Development of O. sativa MAALs h
Page 184 and 185: MAAL H, which corresponded to the h
Page 186 and 187: 4. a) PMC of MAAL N showing 12 II +
Page 190: Discussion Session 2: Genetic marke
Page 194 and 195: Genetics of leaf rolling under drou
Page 196 and 197: harvested to generate F 3 lines. Th
Page 198 and 199: All the F 3 populations of 70-80 li
Page 200 and 201: with the parents. TS in the present
Page 202 and 203: Genetic analysis for salt tolerance
Page 204 and 205: Table 1. Mean salt susceptibility s
Page 206 and 207: Table 4. Estimates of genetic param
Page 208: References cited Akbar M, Khush G S
Page 211 and 212: Table 1. Segregation pattern for pa
Page 214 and 215: Discussion Session 3: Genetics of s
Page 216: SESSION 4 Genetics of Morphological
Page 219 and 220: Glutinous endosperm and kernel deve
Page 221 and 222: Major genes controlling grain size
Page 223 and 224: Uniformity of grain size within a g
Page 225 and 226: References cited Chandraratna M F,
Page 228 and 229: Genetics and biochemistry of in vit
Page 230 and 231: 1. Percentage of lysine in endosper
Page 232 and 233: 3. Characteristics of field-grown l
Page 234 and 235: 5. Histogram of % lysine in endospe
Page 236: lys+thr selection procedures. These
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efore being transported into the PB
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3. Two-dimensional gel electrophore
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4. Transmission electron micrograph
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Table 5. Segregation of normal and
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Genes for late heading and their in
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Table 2. Late-heading alleles found
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from a few backcrosses with T65 and
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Materials and methods Seeds of NK58
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Table 2. Effect of photoperiod leng
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Table 5. Frequency of aberrations i
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4. a) Asynchronous development of N
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References cited Shi Mingsong (1981
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Table 1. Breeding procedure of the
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Physiological characteristics of TG
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There is one more benefit with envi
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A —Schaeffer: The increased mutan
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SESSION 5 Genetics of Disease and I
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esistant to BPH and whitebacked pla
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suggests that a limited amount of g
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Table 2. Reaction of BC 2 F 2 proge
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hybrids, suggesting that intergenom
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Murashige T, Skoog F (1962) A revis
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and used in this study. Green leafh
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fit the 1:3 ratio (p > 0.30 and p >
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4. Frequency distribution of seedli
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Notes Authors’ addresses: M. Shah
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Materials and methods Eight BPH-res
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Table 3. Reaction to BPH of F 1 s,
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Level of antibiosis in each biologi
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Genetic analysis of resistance to w
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Inheritance of resistance The F 1 s
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The F 1 s from all the crosses were
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SESSION 6 Tissue and Cell Culture
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Induced mutations allow increased g
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secondary proliferations appeared o
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unselected plants were etiolated or
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Diallel analysis of callus growth a
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Callus growth The mean fresh weight
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elow the regression line, had an ex
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Table 4. Estimation of genetic comp
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dominant gene or by genes at closel
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Materials and methods Callus was in
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Table 3. Segregating and nonsegrega
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Maliga P (1985) Cell culture isolat
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Some shortcomings are present in WA
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Table 1. Pollen fertility and seed
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Table 3. Seed and pollen fertility
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Table 5. Frequency of somaclonal ma
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Regeneration and transformation of
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Table 2. Differentiation and plant
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Table 4. GUS assay by spent media o
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Isolated microspore culture of rice
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Table 1. Plating efficiency and pla
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Factors affecting p-grain developme
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5. Percentage of p-grains and viabi
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References cited Chen Y, Wang R, Ti
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Liquid nitrogen storage has already
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Post-freezing cell respiration, and
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2. Morphology of rice callus (a) 0d
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cells that had been cryopreserved u
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Table 3. Morphology and regrowth of
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Notes Authors’ addresses: P.T. Ly
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when all IR20 plants are dead. Howe
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However, successful similar studies
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Structure of cytoplasmic genomes in
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The size of the psbA mRNA was deter
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3. Genetic map of rice mtDNA. gener
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Rice mitochondrial genes C. André,
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DNA episomes of cytoplasmic male st
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1. Annotated sequence of IR36 cob g
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3. Annotated sequence of IR36 atp 9
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Table 2. Nucleotide content of 3 IR
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Kaleikau E K, André C P, Doshi B,
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Organization of mitochondrial DNA i
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5. purification of mitochondria usi
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2. Hybridization of the maize cytoc
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5. Hybridization of the maize cytoc
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Murashige T, Skoog F(1962) A revise
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Genetic analysis of nuclear DNAs ho
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concentration of 20 µg/ml, and the
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Table 2. Presence of plasmid-like D
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Table 3. Segregation analysis of fr
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Discussion Session 7: Molecular gen
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an obvious difference between the C
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A rice DNA sequence that resembles
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Results and discussion The putative
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Table 1. G+C percentage distributio
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5. Genomic blot hybridization analy
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7. Slot-blot analysis of DNA from 3
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Wu T, Wu R (1987) A new rice repeti
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morphological distortions were pres
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2. Genomic DNA from rice plants reg
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4. Further analysis of the same DNA
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detected polymorphisms for each gen
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than that of coding or 3' domains (
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Schwarg-Sommer Z, Shepard N, Tacke
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The discovery that some repeated DN
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2. Hybridization with CC genome-spe
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Fate of repeated sequences in allot
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Species-specific repetitive DNA seq
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Table 1. Rice species used in the s
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3. Hybridization of pOm6 to Eco RI-
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for analyzing alien introgression i
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Organization, structure, and expres
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isolated from rice varieties IR36 a
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epetitive DNA sequences (Sutliff et
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4. Cereal a -amylase phylogenic tre
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Table 3. Alignment of 17 a -amylase
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6. Slot-blot quantification of rice
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McCouch S R, Kochert G, Yu Z H, Wan
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Q— Zhang Qifa: Did you try to obs
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SESSION 9 RFLP Analysis of Rice Gen
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marker. This can be a welcome alter
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1. RFLP “framework” map (not al
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2. Regression of total number of un
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Tanksley S D, Miller J, Paterson A,
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Approaches to tagging Two approache
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linkage between the RFLP marker(s)
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very labor- and time-intensive, sin
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RFLP tagging of blast resistance ge
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then transferred to a humid greenho
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1. Map of rice chromosome 3. Note t
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e useful in breeding programs. Homo
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Toward the integration of a restric
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a japonica variety, Nipponbare, was
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atio of codominance (1:2:1) or domi
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Kishimoto N, Yano M, Tanaka T, Sait
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Page 517 and 518:
Ie are clearly apart (Fig. 1). Clus
Page 519 and 520:
also showed different responses to
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Cytoplasmic DNA markers, phylogeny,
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shown to be different at numerous l
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1. Cladogram showing relatedness am
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2. Average linkage dendrogram based
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Conclusion The pattern of variation
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ecological adaptation, including te
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Biology and genetics of Pyricularia
Page 536 and 537:
with two alleles of one mating-type
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from E. coracana (Hamer et al 1989)
Page 540 and 541:
Table 1. Length polymorphism of the
Page 542 and 543:
crossing-over within a family of re
Page 544:
Silue D, Notteghem J -L (1990) Prod
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examine genetic diversity within P.
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SESSION 10 Molecular Genetics of Ri
Page 553 and 554:
Molecular size (kDa) by Signal sequ
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1. Homology among 13-kDa prolamins,
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4. Fractionation of rice endosperm
Page 559 and 560:
consensus sequences for sorting. Th
Page 562 and 563:
Genetic manipulation of storage pro
Page 564 and 565:
Table 2. Amino acid composition of
Page 566 and 567:
2. ELISA of rice albumin. The antig
Page 568 and 569:
4. Schematic representation for com
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Glutelin genes in wild rices Hsin-K
Page 572 and 573:
espectively—were prepared by poly
Page 574 and 575:
sequence reacted positively to eith
Page 576:
Discussion Session 10: Molecular ge
Page 580 and 581:
Defense gene regulation C.J. Lamb,
Page 582 and 583:
-107. A duplicated TGTCCAGGT motif,
Page 584 and 585:
highly in roots and at only low lev
Page 586 and 587:
Discussion We have successfully iso
Page 588:
Somssich I E, Schmelzer E, Bollmann
Page 591 and 592:
into and expressed from the host ge
Page 593 and 594:
2. (-)-strand primer sequences of R
Page 595 and 596:
The preceding sequence data are str
Page 597 and 598:
Maurer B, Bannert H, Darai G, Fluge
Page 600 and 601:
Recent advances in genetic analysis
Page 602 and 603:
etween two field isolates from rice
Page 604 and 605:
Most single-conidial isolates from
Page 606 and 607:
2. Genetic map of Magnaporthe grise
Page 608 and 609:
3. Histopathological comparison of
Page 610:
Leung H, Williams P H (1987) Nuclea
Page 614:
SESSION 12 Transformation Technique
Page 617 and 618:
Toriyama et a1 (1988) were unable t
Page 619 and 620:
period to antibiotic-free Linsmaier
Page 621 and 622:
Table 2. Line lR54-5 lR54-5 lR54-6
Page 623 and 624:
5. Southern blot analysis of DNA fr
Page 625 and 626:
7. Transgenic plants 70 d after tra
Page 627 and 628:
Lyznik L A, Ryan R D, Ritchie S W,
Page 629 and 630:
Materials and methods Protoplasts w
Page 631 and 632:
Analysis of regenerated plants One
Page 633 and 634:
3. Transmission of HPT gene to prog
Page 635 and 636:
In contrast to the report of Shimam
Page 638 and 639:
Rice transformation, vectors, and e
Page 640 and 641:
1. Southern blot analysis of transg
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2. Southern blot analysis of transg
Page 644 and 645:
Agrobacterium strains was studied.
Page 646 and 647:
GENE 9 (RI) 5. Southern blot analys
Page 648:
Hooykaas-Van Slogteren G M S, Hooyk
Page 651 and 652:
plant cells, especially into monoco
Page 653 and 654:
ice callus plates was very poor (ma
Page 655 and 656:
A preliminary report on rice transf
Page 657 and 658:
Yang H, Zhang H M, Davey M R, Mulli
Page 659 and 660:
Materials and methods The following
Page 661 and 662:
2. a) Protoplasts isolated from ric
Page 663 and 664:
suggesting that the d -endotoxin pr
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Inheritance of a foreign gene in tr
Page 668 and 669:
hygromycin B was added to the mediu
Page 670 and 671:
Table 1. Recovery of transgenic ind
Page 672 and 673:
4. Enzyme assay for hygromycin phos
Page 674 and 675:
in rice (Peterhans et al 1990, Slig
Page 676:
Notes Authors’ address: S.K. Datt
Page 679 and 680:
avoid chimeric transformants, which
Page 681 and 682:
Assay for GUS expression and integr
Page 683 and 684:
auxin produced globular structures.
Page 685 and 686:
7. Autoradiographs of Southern blot
Page 687 and 688:
Potrykus I (1990) Gene transfer to
Page 690 and 691:
State of the art in gene transfer t
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gene transfer, also enabled efficie
Page 694 and 695:
that allow discrimination between f
Page 696 and 697:
Incubation of dry seeds The most re
Page 698 and 699:
References cited Ahlquist P, French
Page 700 and 701:
Discussion Session 12: Transformati
Page 702:
Posters
Page 705 and 706:
Isolation and characterization of r
Page 707 and 708:
1. Restriction map of O. sativa ctD
Page 709 and 710:
Table 1. Number of accessions carry
Page 711 and 712:
O. sativa japonicas (including java
Page 713 and 714:
Physical mapping of rice restrictio
Page 715 and 716:
Efficient introduction of foreign g
Page 717 and 718:
of gene transfer was determined by
Page 719 and 720:
After harvest, the D 1 transgenic p
Page 721 and 722:
Table 1. Assay for involvement of p
Page 723 and 724:
Page 725 and 726:
2. Ideograms showing genotypic cons
Page 727 and 728:
1. Structures of signal sequences o
Page 729 and 730:
References cited Abdullah R, Thomps
Page 731 and 732:
Initially, biochemical selection of
Page 733 and 734:
Somatic hybridization studies betwe
Page 735 and 736:
Stress tolerance in rice cell lines
Page 737 and 738:
Novel proteins involved in dediffer
Page 739 and 740:
Table 1. Comparison of changed prot
Page 741 and 742:
Table 1. Effect of callus induction
Page 743 and 744:
Table 1. Chromosome number of plant
Page 745 and 746:
Table 1. Segregations of heterozygo
Page 747 and 748:
Notes Author's address: E. Guiderdo
Page 749 and 750:
Notes Authors’ address: P.B. Kavi
Page 751 and 752:
Table 1. Anther culture and regener
Page 753 and 754:
1. Growing large plantlets. Table 1
Page 755 and 756:
Table 1. Marker genes assigned to l
Page 757 and 758:
Notes Author’s address: T. Kinosh
Page 759 and 760:
Fukui K, Mukai Y (1988) Condensatio
Page 761 and 762:
Chromosome constitution of diploid-
Page 763 and 764:
Genetic analysis of heading time by
Page 765 and 766:
Effects of dwarfing genes on cell c
Page 767 and 768:
Effects of dwarf genes on rice root
Page 769 and 770:
Genetic aspects of organ differenti
Page 771 and 772:
Genetic identification of mutant ge
Page 773 and 774:
Grain-shattering gene linked with s
Page 775 and 776:
Semidwarfing genes influencing morp
Page 777 and 778:
Eating quality of rice cultivars in
Page 779 and 780:
Genetic analysis of grain size in r
Page 781 and 782:
Core collections: providing access
Page 783 and 784:
Monosomic alien addition lines of O
Page 785 and 786:
Table 1. Rhizome expression in inte
Page 787 and 788:
~ ~~~ for clustering of annuals and
Page 789 and 790:
Increasing cold and drought toleran
Page 791 and 792:
2. Changes in survival percentage o
Page 793 and 794:
Table 1. Genetic analysis of F 1 ri
Page 795 and 796:
Simple, rapid procedure for analyzi
Page 797 and 798:
Breeding of near-isogenic lines for
Page 799 and 800:
Variation in resistance to bacteria
Page 801 and 802:
Genetic analysis of rice blast resi
Page 803 and 804:
control, whereas segregation among
Page 805 and 806:
Yield (t/ha) 4.2 4.4 4.7 2.2 4.0 5.
Page 807 and 808:
Mutagen-induced male sterility in r
Page 809 and 810:
Induction of inheritable dwarfism i
Page 811 and 812:
1. Dose-response curves of M 1 inju
Page 813 and 814:
Exploitation of useful semidwarfing
Page 815 and 816:
2. Frequency distribution of culm l
Page 817 and 818:
Genetics of quantitative traits in
Page 819 and 820:
Genetic studies on intercalary elon
Page 821 and 822:
Some quantitative characters of ric
Page 823 and 824:
Genetic analysis of wide compatibil
Page 825 and 826:
An approach to the genetic pattern
Page 827 and 828:
Table 1. Change of genotypic freque
Page 829 and 830:
Table 1. Effect of photoperiod and
Page 831 and 832:
Table 1. Maximum light-saturated ra
Page 833 and 834:
Genotypic difference in response to
Page 835 and 836:
Notes Authors’ address: Y. Okumot
Page 837 and 838:
In contrast, although variations in
Page 839 and 840:
Table 1. Segregation for aroma in F
Page 841 and 842:
1. Two-dimensional distribution of
Page 843 and 844:
Induced mutations for identifying a
Page 845 and 846:
Table 1. Agronomic characteristics
Page 847 and 848:
1. (a) Clipping upper part of spike
Page 849 and 850:
Internode elongation system of Nepa
Page 851 and 852:
2. Comparative elongation of groups
Page 853 and 854:
etter parent produced more HD grain
Page 855 and 856:
Page 857 and 858:
Amplification of chloroplast DNA fr
Page 859 and 860:
3. Total DNA extracted from single
Page 862:
Closing Reports, Participants, and
Page 865 and 866:
IRRI has built an immense worldwide
Page 867 and 868:
• The search for more efficient o
Page 870 and 871:
Committee reports Report of the mee
Page 872 and 873:
Report of the meeting to discuss co
Page 874 and 875:
the identification of extra chromos
Page 876 and 877:
Election of officers of Rice Geneti
Page 878 and 879:
Qing-Rui He YUnnan Academy of Agric
Page 880 and 881:
Alain Ghesquiere Charge de Recherch
Page 882 and 883:
INDONESIA Ida Hanarida Central Rese
Page 884 and 885:
T. Kumamaru Plant Breeding and Gene
Page 886 and 887:
Tetsuo Takano Experimental Farm Fac
Page 888 and 889:
Abdullah Mohamad Zain MARDI Seberan
Page 890 and 891:
John F. Dallas Department of Agrono
Page 892 and 893:
B.O. Juliano G.S. Khush N. Kobayash
Page 894 and 895:
100957 (O. malampuzhaensis) 411 100
Page 896 and 897:
FL 330 129, 130, 132 Fujiminori 779
Page 898 and 899:
Macan Coranglan 12 Ma Hae 137-140,
Page 900 and 901:
T65(1)lf-1 211-215 T65(2)TK45L 212,
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Analysis of Genes for Stigma Coloration in Rice - IRRI books

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