Analysis of Genes for Stigma Coloration in Rice - IRRI books

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Table 1. Classification of 19 dwarf lines based on cause of internode shortening for each of the 3 upper internodes. Cause of internode shortening a in Internode I Internode II Internode III Line b 1 1 1 1 + 2 2 1 1 1 2 2 2 2 2 3 1 2 1 2 2 + 2 3 d-1, d-12 c , d-30, d-a d-27, d-47 (sd-1), d-b d-3, d-4, d-5 d-2, d-10, d-14, d-17, d-18 h , d-18 k , d-35 d-6 d-11 d-13 d-7 a 1 = fewer cells, 2 = fewer cells and shorter cell length, 3 = shorter cell length, + = no shortening of internode length. b Name of line is indicated by symbol of dwarf gene involved. c Abnormal cell morphology. Notes Author’s address: O. Kamijima, Faculty of Agriculture, Kobe University, Kobe 657, Japan. Citation information: International Rice Research Institute (1991) Rice genetics II. P.O. Box 933, Manila, Philippines. Posters 711
Effects of dwarf genes on rice root elongation H. Kitano and Y. Futsuhara The effects of dwarf genes on root elongatlon at the seedlmg stage were examined in 18 near-isogenlc dwarf lines that were bred at the Plant Breedmg Institute of Hokkaido University using Shiokarl as the recurrent parent (Kinoshlta and Shinbashi 1982). Seedlings of the lines and Shlokari were grown for 10d after germlnatlon by soil culture in the greenhouse and by hydroponics in a growth cablnet at 28 °C. Thereafter, data on shoot, seminal root, and nodal root lengths and on number of roots were recorded. In addition, average nodal root length and total root length were calculated from the mean values of the measurements of root characters. Table 1 shows the results of the soil culture experiment. Except In a few lines, shoot and/or root growth inhibition by each dwarf gene showed a slmilar tendency in the two cultural condltions. The lines were classified into four categories: Group A having a prominent decrease in root length and shoot length (d-1, d-10, d-11, d-13, d-27), Group B having a greater decrease In shoot length than in root length (d-18 k , d-35, d-b), Group C having a greater decrease In root length than in shoot length (d-3, 4, 5, d-7, d-14, d-17, and Group D composed of resldual lines (d-2, d-6, d-12, d-30, d-47, d-a). Although it is confrrmed that d-7 and d-27 significantly decrease radicle length in the mature embryonic stage (Kamglma and Watanabe 1985), in this experiment reduclble effects by these dwarf genes could not be detected on seminal root elongatlon after germmatlon. On the other hand, excised root tips of the isogenic lines were cut at 1 cm from the top of the seminal root of seedlings at 6 d after germination and cultured on White's medlum for 21 d at 26 °C in the dark. The root growth responses of the 18 lines were compared wlth that of Shiokari. The results of this experiment were conslderably different from those gwen above, suggesting that dwarf gene action on root growth is affected by shoot growth. These results reveal that the expression of dwarf genes on root elongation varies remarkably. References cited Kamijima O, Watanabe K (1985) Effect of dwarf genes on size and cellular characteristics of embryonic organs in near-isogenic lines of rice. Jpn. J. Breed. 35:243-254. Kinoshita T, Shinbashi N (1982) Identification of dwarf penes and their character expression in the isogenic background. Jpn. J. Breed. 32:219-231. 712 Posters
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Rice Genetics II Proceedings of the
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Contents Foreword xiii K. J. Lampe
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Thermosensitive genetic male steril
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Intraspecific variation and genetic
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Restriction fragment length polymor
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Simple, rapid procedure for analyzi
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Foreword The First International Ri
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The First International Rice Geneti
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International cooperation in rice g
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Chromosomes were numbered in decrea
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Establishment of the Rice Genetics
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Abbreviations and acronyms A ABA AC
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S SCA = specific combining ability
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Association between Pox-1 variation
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Near-isogenic lines of Pox-1 Ten F
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Table 3. Association between charac
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2. Comparison of character measurem
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Fu P Y, Pai C (1979) Genetic studie
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protein, since a wx mutant (75-1) p
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2. Heterogeneity of Wx proteins (sp
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Altered gene expression As mentione
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Table 3. Distribution of nonwaxy al
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Notes Authors’ addresses: Y. Sano
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designation to “tropical japonica
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Table 2. Pollen and spikelet fertil
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Table 4. Mean similarity indices an
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Root thickness. The upland and aus
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The aus group is also closely relat
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Notes Authors’ addresses: T.T. Ch
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to identify the wide compatibility
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Hybrids between aus varieties Becau
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Genetic analysis of hybrid sterilit
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Table 5. Detection of wide compatib
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Discussion The system of F 1 hybrid
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How was rice differentiated into in
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1. Relations among phenol reaction,
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3. Association of 9 genes and chara
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The pattern of association among th
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Oka H I (1974) Analysis of genes co
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Table 1. Varieties used in crossing
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1. Hierarchical ascendant classific
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three restriction patterns, while a
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Table 4. Distorted F 2 segregations
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explain the correspondence between
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Traditional highland rices originat
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Morphophysiological variability The
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2. Distribution of varieties from M
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Locus Allele Whole sample Indica gr
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For the japonica group, Madagascar
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Thus, rice introduction in Madagasc
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Rabary E, Noyer J L, Benyayer P, Ar
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The spontaneous hybrids were called
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Table 1. Mean outcrossing rates (m)
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Table 3. Comparison of 1) ratios of
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fertility and to eliminate unfavora
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Discussion Session 1: Varietal diff
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Q— Chang : The earliest remains o
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A— Morishima : Since most of the
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Analysis of genes for stigma colora
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Table 1. Varieties used as parents
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Underlying genes in these different
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(121:9, 2 homogeneous crosses poole
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Table 6. Linkage relations estimate
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Table 9. Recombination values obtai
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In this study, inhibitors for stigm
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Gene mapping of some morphological
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• Liguleless-a. The auricle and l
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Table 3. Linkage between sheathed p
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Table 6. Linkage between short ligu
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3. Linkage relationships between ne
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Linkage relationships between genet
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1. Linkage map of 5 genes including
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Notes Authors’ addresses: H.S. Su
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Table 1. Rice isozyme genes and cor
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10 5 5 8 6 14 18 20 34 15 6.13 (0.5
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1. Linkage maps of 11 isozyme genes
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Table 5. Number of variant subcell
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Ranjhan S, Glaszmann J C, Ramirez D
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environment, have pleiotropic effec
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Table 3. Segregation for Enp-1 in B
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Linkage relationship between isozym
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Table 8. Summary of linkage relatio
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Production of monosomic alien addit
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1. Development of O. sativa MAALs h
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MAAL H, which corresponded to the h
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4. a) PMC of MAAL N showing 12 II +
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Jena K K, Khush G S (1989) Monosomi
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SESSION 3 Genetics of Stress Tolera
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Knowledge of the genetics of drough
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esistant plants unrolled. The resis
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Table 3. Leaf rolling and unrolling
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IRRI—International Rice Research
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Materials and methods Genetic analy
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Table 3. Estimates of genetic param
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1. Grain yield per plant. 1 = IR20,
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Inheritance of panicle exsertion in
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Notes Authors’ address: D.M. Mahi
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parallel to normal soil. Do you thi
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Inheritance of grain size and its i
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size may occur. Takeda (1983) found
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genes allelic to Lk-f. These result
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Grain size in relation to yield To
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Takeda K, Saito K (1980) Major gene
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inhibitors were recovered, plants r
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corresponding amides. Cysteine was
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4. Relationships among seed weight,
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tate was significantly higher in th
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Mutants for rice storage proteins T
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1. SDS-PAGE analysis of salt-insolu
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Table 1. Content of proteins extrac
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Table 3. Segregation of normal and
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Kumamaru T, Satoh H, Iwata N, Omura
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Table 1. Lines carrying late-headin
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Crosses between late-heading lines
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Photoperiod-conditioned male steril
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Table 1. Daily changes in pollen fe
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Plants (%) 1. Distribution of NK58s
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generative nucleus degenerates, wit
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Table 6. Segregation for spikelet f
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Thermosensitive genetic male steril
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Table 3. Seed set percentage and fl
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Table 8. Fertility of H89-1 grown u
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Discussion Session 4: Genetics of m
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Q— Virmani: IRRI is thankful to J
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Transfer of blast and bacterial bli
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inocula in the International Rice B
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1. Blast lesions on a) Oryza sativa
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Table 4. Reaction of WHD IS 78-1 BC
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minuta Acc. 101141 has been shown t
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Inheritance of resistance to rice t
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203 is recessive. The F 2 populatio
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esults of Pankhari 203/TN1 showed a
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RTSV can spread as an independent v
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Genetics of rice resistance to brow
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Table 1. Reaction to BPH of F 1 s a
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esistant:8 segregating:1 susceptibl
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Data on the relative contribution o
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88 (using ADR52 and N’Diang Marie
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Crosses with ADR52 and N’Diang Ma
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Discussion Session 5: Genetics of d
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Application of somaclonal variation
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Unfavorable conditions induced some
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tion. Root and leaf growth was prog
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in vitro selection at the haploid l
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information on the inheritance of c
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espectively). Average frequencies o
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3. (Vr, Wr) graph for plant regener
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Table 6. Analysis of variance of 6
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Genetic analysis for salt tolerance
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Table 1. Regenerants from IR20 and
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Table 5. Fertile R 1 progeny lines
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Somaclonal male sterile mutants and
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sterile plants in the R 1 and R 2 w
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Table 2. Segregation patterns for s
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When Zhen shan 97 B and Er Jiu-ai B
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Oono K (1985) Putative homozygous m
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and exhibiting high regenerative ca
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Table 3. Detection of ß-glucuronid
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Lee L, Schroll R E, Grimes H D, Hod
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advantageous than wing somatic cell
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2. Division frequency of pollen at
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4. Effect of exposure time at diffe
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Table 4. Effect of quality and quan
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Cryopreservation: a method for main
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Table 1. Cryoprotectant and freezin
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treatments (Fig. 1b, c, d) was simi
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3. Post-freeze respiration of pretr
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after freezing. The membrane carrie
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References cited Abdullah R, Cockin
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Discussion Session 6: Tissue and ce
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Q— Zheng Kangle: I wonder if male
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SESSION 7 Molecular Genetics of Cyt
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1. Nucleotide sequence of 32-kDa qu
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2. Genetic and physical map of ctDN
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Kanno A, Hirai A (1989) The nucleot
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number of these genes have been obt
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346 André et al
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2. Annotated sequence of IR36 cox 3
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Table 1. Codon usage for 3 rice mit
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ase recognition enzyme and hence is
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Notes Authors’ address: C. Andé,
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pathogen Helminthosporium maydis, r
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cytoplasm of a naturally occurring
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Generally, in vitro cultures genera
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Chowdhury M K U, Schaeffer G W, Smi
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Small I D, Earle E D, Escote-Carlso
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origin. Kadowaki et al (1988) exami
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Table 1. Presence of mitochondrial
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emarkable polymorphisms were observ
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Nakagahra M (1972) Genetic mechanis
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Q— Ranjekar: Are there any variat
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SESSION 8 Molecular Genetics of Nuc
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element has a very high G+C content
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3. Nucleotide sequence alignment of
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4c). However, no messenger RNA can
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6. Genomic blot analysis of IR36 (T
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This gives a ratio of 4.6, which is
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Genetic variation in tissue culture
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1. Genomic DNA was isolated from ri
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3. Genomic DNA from regenerated ric
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Table 2. RFLP analysis of rice plan
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5. Genomic DNA was isolated from ca
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References cited Baker A, Leaver C
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Characterization of repeated DNA se
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1. Hybridization with AA-specific 3
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were observed, suggesting that a te
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References cited Cordesse F, Second
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markers may facilitate selection du
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1. Genomic DNA of rice species dige
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4. Hybridization of pOm6 to Eco RI-
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Notes Authors’ addresses: H. Aswi
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still unclear how many isozymes are
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2. Restriction map of 5 rice chromo
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a Horizontal clones are abbreviated
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(Huttly et al 1988), the Amy2 subfa
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5. Summary of rice a -amylase genes
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intron is not always present. One p
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Discussion Session 8: Molecular gen
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Q— Ranjekar: a -amylase is a mult
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RFLP mapping of the rice genome S.D
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for plant species with comparable g
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on 113 backcross individuals, and t
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ice is the major grain crop. To fac
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Tagging genes for disease and insec
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Table 2. Summary of resistance char
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mapped. 2) We clone unique, or sing
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Kelemu S, Leach J E (1990) Cloning
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Recently developed restriction frag
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The majority of polymorphic clones,
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2. Map of main linkage group of ric
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Valent B, Farrall L, Chumley F G (1
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ecently, a linkage map of RFLP mark
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2. Segregation of some RFLP markers
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to the 12 chromosomes (Fig. 3). For
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Intraspecific variation and genetic
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library from Nipponbare, a Japanese
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Intraspecific differentiation in ri
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Oka H I (1953a) Phylogenetic differ
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ice (summarized in Second 1985b). T
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Ava I were studied in all plants, a
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longistaminata occurred (Second 198
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Mitochondrial DNA RFLP in section O
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SATIVA GROUP (Genome A) Ancestral s
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Dally AM, Second G (1989) Chloropla
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genetics of P. oryzae and P. grisea
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Valent et al 1986, Yaegashi and Asa
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[Gabriel 1989] and fungi [Leong and
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Table 2. Similarities between Pyric
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Kato H, Yamaguchi T (1980) Host ran
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Discussion Session 9: RFLP analysis
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all sequences are initially duplica
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Rice endosperm proteins and their a
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osmium tetraoxide staining, is obse
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3. Structures of signal sequences o
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endosperm cells. This figure is the
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Masumura T, Hibino T, Kidzu K, Mits
Page 563 and 564:
Table 1. Composition of rice (Oryza
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1. Effect of ethanol concentration
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3. ELISA of rice albumin using vari
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against 70% ethanol. Using those im
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Table 1. Rice species used. Species
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Table 2. Rice DNA bands hybridized
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Takaiwa F, Kikuchi S, Oono K (1988)
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SESSION 11 Molecular Genetics of Di
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teins and enzymes contributing to r
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Chitinase gene transcripts began to
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phenotype for the chitinase gene. A
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oth a heterologous (tobacco) and in
Page 590 and 591:
Molecular biology of rice tungro vi
Page 592 and 593:
Rice tungro bacilliform virus The p
Page 594 and 595:
Table 1. tRNAs that are (-)-strand
Page 596 and 597:
Ge X, Gordon D T, Gingery R E, McMu
Page 598:
Zhang H M, Yang H, Rech E L, Golds
Page 601 and 602:
the magnitude of the problem, satis
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ecovered. Rice plants infected with
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Genetic map Through the work of sev
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Production of recombinant and trans
Page 609 and 610:
Studies of host plant resistance ha
Page 612:
Discussion Session 11: Molecular ge
Page 616 and 617:
Co-transformation of indica rice vi
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1. Plasmid constructions used in tr
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2. Growth of IR54 protoplasts. a =
Page 622 and 623:
antibiotic-resistant calli per 10 5
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6. Southern blot of DNA isolated fr
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another co-transformation study, To
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Efficient transformation of rice ce
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hygromycin (50 µg/ml). After furth
Page 632 and 633:
2. Southern blot analysis of DNA ex
Page 634 and 635:
Table 4. GUS activity of leaf extra
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Nagy F, Boutry M, Hsu M Y, Wong M,
Page 639 and 640:
Gene constructs Regenerating rice p
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callus by histochemical staining us
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3. Southern blot analysis of DNA ex
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4. Tissue-specific and constitutive
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derived from the rice genes could b
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Evaluation of transformation techni
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4000 solution. After 30 min of incu
Page 654 and 655:
Introduction of foreign DNA into dr
Page 656 and 657:
Jefferson R A, Kavanagh T A, Bevan
Page 658 and 659:
Transgenic rice plants produced by
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µg DNA/10 6 protoplasts, and the p
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3. a) Shoot and root differentiated
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one showed high GUS activity (Fig.
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Materials and methods Experiments w
Page 669 and 670:
Progeny test for resistance to hygr
Page 671 and 672:
3. Southern blot analysis of transg
Page 673 and 674:
Southern blot data are presented fo
Page 675 and 676:
Feinberg A P, Vogelstein B (1983) A
Page 678 and 679:
Polygenic transformation of rice us
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1. Restriction maps of the plasmids
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2. Transient GUS expression in root
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Several somatic embryos germinated
Page 686 and 687:
Botti C, Vasil I K (1984) Ontogeny
Page 688:
Yang H, Zhang M, Davey M R, Mulliga
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integrates into the host genome. Th
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I am therefore skeptical that bioli
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has still to be shown. This method,
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cells and, therefore, all problems
Page 699 and 700:
Potrykus I, Paszkowski J, Saul M W,
Page 701 and 702:
A— Datta: Sometimes efficiency is
Page 704 and 705:
Characterization of a repetitive hy
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Comparative studies of the structur
Page 708 and 709:
Evolution of the intergenic spacer
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Cytoplasmic and nuclear DNA differe
Page 712 and 713:
Table 2. Correspondence among 6 enz
Page 714 and 715:
correlations between centimorgans (
Page 716 and 717: Table 1. Effect of digestion time o
Page 718 and 719: Introduction of exogenous DNA direc
Page 720 and 721: Isolation of rice phytochrome genes
Page 722 and 723: Restriction fragment length polymor
Page 724 and 725: 1. Southern blot analysis of size o
Page 726 and 727: Accumulation signals of rice endosp
Page 728 and 729: Assessment of protoclonal variation
Page 730 and 731: Tissue culture and somatic hybridiz
Page 732 and 733: References cited Abdullah R, Cockin
Page 734 and 735: The isolation of large numbers of s
Page 736 and 737: Table 1. Survival rate of callus pr
Page 738 and 739: 1. Silver-stained 2-dimensional pol
Page 740 and 741: Cytohistological observations on pl
Page 742 and 743: Production of aneuhaploids (2n=13)
Page 744 and 745: Assessment of gametic selection in
Page 746 and 747: 1. Representation of linkages betwe
Page 748 and 749: Salt tolerance in rice callus cultu
Page 750 and 751: Regeneration of plants from culture
Page 752 and 753: Chromosome studies and multiplicati
Page 754 and 755: Current linkage maps in rice T. Kin
Page 756 and 757: Table continued. Gene Locus Gene Lo
Page 758 and 759: Characterization of rice chromosome
Page 760 and 761: Table 1. Numerical data on somatic
Page 762 and 763: Table 1. Mutant lines that exhibite
Page 764 and 765: 1. Segregation for heading time and
Page 768 and 769: Table 1. Top and root characters of
Page 770 and 771: The phenotypic diversity of these 2
Page 772 and 773: References cited Futsuhara Y, Yamag
Page 774 and 775: 1. Frequency distribution of degree
Page 776 and 777: 1. Changes in plant height, root le
Page 778 and 779: 1. Variation in components among ri
Page 780 and 781: These analyses reveal the predomina
Page 782 and 783: Table 1. Genomic and continental re
Page 784 and 785: Reexamination of genetic control of
Page 786 and 787: Relatedness of annual and perennial
Page 788 and 789: among prolamin gene copies could be
Page 790 and 791: 1. Changes in chlorophyll fluoresce
Page 792 and 793: Genetic control of chilling injury
Page 794 and 795: Table 4. Relationship between genot
Page 796 and 797: 1. Polypeptide patterns of some M 1
Page 798 and 799: Table 1. Near-isogenic lines for BB
Page 800 and 801: Table 1. lntrapopulational variatio
Page 802 and 803: 1. Correlation between reactions to
Page 804 and 805: Induced mutations for rice improvem
Page 806 and 807: References cited Arasu, N T, Gaul H
Page 808 and 809: Table 1. Breeding behavior of selec
Page 810 and 811: Mutagenic effects of accelerated ar
Page 812 and 813: References cited Cox R, Thacker J,
Page 814 and 815: 1. Hypothesis for segregatim of sem
Page 816 and 817:
Combining ability and heterosis for
Page 818 and 819:
1. Circle of correlations. WGP = we
Page 820 and 821:
Table 1. Estimates of genetic param
Page 822 and 823:
Table 1. Components of variation an
Page 824 and 825:
Table 1. Pollen and spikelet fertil
Page 826 and 827:
Does hybrid sterility isolate indic
Page 828 and 829:
Effects of genotype x environment i
Page 830 and 831:
Variation in chlorophyll proteins b
Page 832 and 833:
Notes Authors’addresses: N. Watan
Page 834 and 835:
Table 1. Response of young panicle
Page 836 and 837:
Differentiation between populations
Page 838 and 839:
Rice aroma: methods of evaluation a
Page 840 and 841:
Application of computer image analy
Page 842 and 843:
Genetic analysis of embryo length i
Page 844 and 845:
1. Frequency distribution of headin
Page 846 and 847:
Reliable, simple method for produci
Page 848 and 849:
2. Rice pollen plants by 1-step cul
Page 850 and 851:
1. Internode elongation system in w
Page 852 and 853:
Inheritance of high-density rice gr
Page 854 and 855:
Table 2. Estimates of gene effects
Page 856 and 857:
1. Banding patterns of RFLP marker
Page 858 and 859:
1. Ancient rice seed (AD 800) from
Page 860:
Hiratsuka J, Shimada H, Whittier R,
Page 864 and 865:
Overview of the Second Internationa
Page 866 and 867:
Closing remarks F.A. Bernardo I am
Page 868:
• The members of the organizing c
Page 871 and 872:
Report of the meeting on gene symbo
Page 873 and 874:
Report of the meeting to discuss th
Page 875 and 876:
References cited Glaszmann J C, de
Page 877 and 878:
Participants AUSTRALIA P.M. Chay-Pr
Page 879 and 880:
Xiangmin Wang Research Laboratory o
Page 881 and 882:
G. Madhava Reddy Department of Gene
Page 883 and 884:
Mitsugu Horita Hokkaido Green-Bio I
Page 885 and 886:
K. Nonomura Faculty of Agriculture
Page 887 and 888:
KOREA, REPUBLIC OF Moon Soo Cho Tae
Page 889 and 890:
Chairerg Maneephong Faculty of Agri
Page 891 and 892:
R.L. Rodriguez Department of Geneti
Page 893 and 894:
Index of varieties and lines 1 001
Page 895 and 896:
C Calmochi 101 352, 374 Caloro 522
Page 897 and 898:
IR28211-43-1-1-2 797, 798 IR29692-6
Page 899 and 900:
P P1231129 [PI 231 129] 444 Pachcha
Page 901:
X X82 758 Xiang-Dao 80-66 784 Xin-h
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