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International Journal <strong>of</strong> Food Microbiology 54 (2000) 171–180<br />

www.elsevier.nl/locate/ijfoodmicro<br />

A <strong>combined</strong> discrete–continuous <strong>model</strong> <strong>describing</strong> <strong>the</strong> <strong>lag</strong> <strong>phase</strong> <strong>of</strong><br />

q<br />

Listeria monocytogenes<br />

*<br />

R.C. McKellar , K. Knight<br />

Sou<strong>the</strong>rn Crop Protection and Food Research Centre – Food Research Program, Agriculture and Agri-Food Canada,<br />

93 Stone Road West, Guelph, Ontario N1G 5C9, Canada<br />

Received 30 April 1999; received in revised form 9 August 1999; accepted 13 November 1999<br />

Abstract<br />

Food microbiologists generally use continuous sigmoidal functions such as <strong>the</strong> empirical Gompertz equation to obtain <strong>the</strong><br />

kinetic parameters specific growth rate (m) and <strong>lag</strong> <strong>phase</strong> duration (l) from bacterial growth curves. This approach yields<br />

reliable information on m; however, values for l are difficult to determine accurately due, in part, to our poor understanding<br />

<strong>of</strong> <strong>the</strong> physiological events taking place during adaptation <strong>of</strong> cells to new environments. Existing <strong>model</strong>s also assume a<br />

homogeneous population <strong>of</strong> cells, thus <strong>the</strong>re is a need to develop discrete event <strong>model</strong>s which can account for <strong>the</strong> behavior<br />

<strong>of</strong> individual cells. Time to detection (t ) values were determined for Listeria monocytogenes using an automated<br />

d<br />

turbidimetric instrument, and used to calculate m. Mean individual cell <strong>lag</strong> times (t ) were calculated as <strong>the</strong> difference<br />

L<br />

between <strong>the</strong> observed td<br />

and <strong>the</strong> <strong>the</strong>oretical value estimated using m. Variability in tL<br />

for individual cells in replicate wells<br />

was estimated using serial dilutions. A discrete stochastic <strong>model</strong> was applied to <strong>the</strong> individual cells, and <strong>combined</strong> with a<br />

deterministic population-level growth <strong>model</strong>. This discrete–continuous <strong>model</strong> incorporating tL<br />

and <strong>the</strong> variability in tL<br />

(expressed as standard deviation; S.D.<br />

L) predicted a reduced variability between wells with increased number <strong>of</strong> cells per<br />

well, in agreement with experimental findings. By combining <strong>the</strong> discrete adaptation step with a continuous growth function<br />

it was possible to generate a <strong>model</strong> which accurately described <strong>the</strong> transition from <strong>lag</strong> to exponential <strong>phase</strong>. This new <strong>model</strong><br />

may serve as a useful tool for <strong>describing</strong> individual cell behavior, and thus increasing our knowledge <strong>of</strong> events occurring<br />

during <strong>the</strong> <strong>lag</strong> <strong>phase</strong>. © 2000 Elsevier Science B.V. All rights reserved.<br />

Keywords: Lag; Listeria monocytogenes; Predictive <strong>model</strong>ing; Bioscreen; Turbidimetric; Discrete; Stochastic; Deterministic<br />

1. Introduction<br />

q<br />

A preliminary account <strong>of</strong> this work was presented at <strong>the</strong> 8th<br />

International Symposium on Microbial Ecology, Halifax, August<br />

1998.<br />

*Corresponding author. Tel.: 11-519-829-2400 ext 3005; fax:<br />

11-519-829-2602.<br />

E-mail address: mckellarr@em.agr.ca (R.C. McKellar)<br />

Bacterial growth data is normally analyzed using<br />

an empirical sigmoidal function such as <strong>the</strong> Gompertz<br />

equation (Gibson et al., 1988; Willocx et al.,<br />

1993). Useful kinetic parameters such as <strong>the</strong> maximum<br />

specific growth rate (m) and <strong>the</strong> <strong>lag</strong> <strong>phase</strong><br />

duration (l) can be obtained from <strong>the</strong> Gompertz<br />

0168-1605/00/$ – see front matter © 2000 Elsevier Science B.V. All rights reserved.<br />

PII: S0168-1605(99)00204-4


172 R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180<br />

function; however, <strong>the</strong>re are some limitations to <strong>the</strong> Some <strong>of</strong> <strong>the</strong> fundamentals <strong>of</strong> this approach have<br />

use <strong>of</strong> this type <strong>of</strong> function. For example, it can be been discussed by McMeekin et al. (1993). These<br />

shown ma<strong>the</strong>matically that <strong>the</strong> Gompertz rate is authors and o<strong>the</strong>rs emphasized <strong>the</strong> limits <strong>of</strong> this<br />

always <strong>the</strong> maximum rate and occurs at an arbitrary method, <strong>the</strong> most severe <strong>of</strong> which is <strong>the</strong> fact that OD<br />

point <strong>of</strong> inflection (Garthright, 1991, 1997). The methods are comparative only, and cannot be used to<br />

Gompertz equation tends to overestimate m as it fits predict viable counts unless some attempt at calia<br />

sigmoidal curve to a straight line. In addition, <strong>the</strong> l bration is made (McMeekin et al., 1993; Baranyi and<br />

calculated with <strong>the</strong> Gompertz is always at a defined Roberts, 1995). McClure et al. (1993) used a simple<br />

point relative to <strong>the</strong> upper and lower asymptotes quadratic equation to relate OD to viable counts.<br />

(Garthright, 1991, 1997). Thus, empirical equations Dalgaard et al. (1994) used two equivalent methods<br />

have a limited ability to enhance our knowledge for calibration: one in which stationary <strong>phase</strong> cells<br />

concerning <strong>the</strong> physiological stages <strong>of</strong> bacterial were diluted to <strong>the</strong> appropriate OD, and <strong>the</strong> o<strong>the</strong>r in<br />

adaptation to new environment and subsequent which samples for OD and viable count were taken<br />

growth. during growth. Predicted generation times were<br />

It has been suggested that connecting <strong>the</strong> behavior lower with viable count data (Dalgaard et al., 1994),<br />

<strong>of</strong> a single cell to that <strong>of</strong> <strong>the</strong> whole population is <strong>the</strong> and this factor has been taken into account in later<br />

next stage in developing a more mechanistic ap- studies (Miles et al., 1997). Similar methods have<br />

proach to predictive food microbiology (Baranyi, been used to relate turbidimetric and viable count<br />

1997). While <strong>the</strong>re have been some attempts to data (Chorin et al., 1997).<br />

develop mechanistic <strong>model</strong>s for bacterial growth In some studies, <strong>the</strong> Gompertz equation was fitted<br />

(Baranyi and Roberts, 1994, 1995; Hills and Wright, directly to OD data; however, no data was available<br />

1994; Hills and Mackey, 1995), <strong>the</strong>se <strong>model</strong>s tend to<br />

7<br />

at below <strong>the</strong> minimum detectable OD (ca. 10 cfu/<br />

view bacteria as a homogeneous population, and ml) thus <strong>the</strong> estimates for l and m should be<br />

<strong>the</strong>re have been few attempts to <strong>model</strong> bacterial questioned (Hudson, 1994; Hudson and Mott, 1994).<br />

adaptation and growth on <strong>the</strong> basis <strong>of</strong> single cells. A form <strong>of</strong> calibration was achieved by relating l<br />

Recently, a <strong>model</strong> was proposed in which <strong>the</strong> using OD measurements to that determined with<br />

bacterial population was divided into non-growing viable counts by a regression equation (Hudson and<br />

and growing cells (McKellar, 1997). This <strong>model</strong> was Mott, 1994). McMeekin et al. (1993) have discussed<br />

expressed in <strong>the</strong> form <strong>of</strong> differential equations, and <strong>the</strong> correct way to fit <strong>the</strong> Gompertz function to %<br />

<strong>the</strong> behavior <strong>of</strong> <strong>the</strong> two types <strong>of</strong> cells was <strong>model</strong>ed transmittance data, and this method has been used to<br />

independently. Buchanan et al. (1997) have proposed calculate generation times (Neumeyer et al., 1997).<br />

a <strong>model</strong> which takes into account <strong>the</strong> variation in O<strong>the</strong>r studies have been carried out without any<br />

adaptation (or <strong>lag</strong>) time <strong>of</strong> individual cells. Simula- apparent calibration (Huchet et al., 1995). l values<br />

tions with this <strong>model</strong> gave rise to ‘‘traditional’’ have been estimated from OD data by extrapolation<br />

growth curves; however, <strong>the</strong>se authors did not pro- <strong>of</strong> <strong>the</strong> exponential portion <strong>of</strong> <strong>the</strong> curve back to <strong>the</strong><br />

vide experimental evidence for <strong>the</strong>ir <strong>model</strong>. More initial cell numbers (Breand et al., 1997); however,<br />

recently, Baranyi and Pin (1999) and Baranyi (1998) this method may be inaccurate since <strong>the</strong> growth rate<br />

have proposed a <strong>lag</strong> <strong>model</strong> based on behavior <strong>of</strong> estimated from <strong>the</strong> OD data may be lower than that<br />

individual cells.<br />

obtained during <strong>the</strong> period <strong>of</strong> maximum growth<br />

Construction <strong>of</strong> <strong>model</strong>s using viable count data is (McMeekin et al., 1993).<br />

time consuming and expensive, and researchers have Interestingly, <strong>the</strong> time to detection (t<br />

d) approach<br />

explored o<strong>the</strong>r, more rapid, methods for accumulat- has not been used to any great extent. The td<br />

for a<br />

ing sufficient data for <strong>model</strong>ing. One <strong>of</strong> <strong>the</strong> simplest turbidimetric instrument can be defined as <strong>the</strong> time<br />

method is <strong>the</strong> use <strong>of</strong> optical density (OD), where required for an initial measurable increase in OD.<br />

growth can be related to <strong>the</strong> increase in turbidity <strong>of</strong> a The difference between td<br />

for serial two-fold dilu-<br />

bacterial culture. This method lends itself particu- tions gives <strong>the</strong> doubling time, from which <strong>the</strong> m can<br />

larly well to automation, and a number <strong>of</strong> studies be determined (Cuppers and Smelt, 1993). The l can<br />

have used automated turbidmetric instruments such be calculated subsequently by <strong>the</strong> difference between<br />

as <strong>the</strong> Bioscreen (McClure et al., 1993; Huchet et al., <strong>the</strong> predicted td<br />

based on <strong>the</strong> m, and <strong>the</strong> observed td<br />

1995). (Cuppers and Smelt, 1993). This method was used to


R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180 173<br />

estimate individual cell <strong>lag</strong> times (Pin and Baranyi, t (h), that is, <strong>the</strong> time required for <strong>the</strong> Bioscreen to<br />

d<br />

1998). Given <strong>the</strong> limitations and inherent inac- record a 0.05 increase in optical density from t .<br />

0<br />

curacies <strong>of</strong> <strong>the</strong> calibration method, <strong>the</strong> td<br />

approach Duplicate wells for each dilution were used for <strong>the</strong><br />

would seem to be <strong>the</strong> only valid one.<br />

preparation <strong>of</strong> a standard curve <strong>of</strong> log OD against<br />

The purpose <strong>of</strong> <strong>the</strong> present study was to (1) obtain cfu/ml. For <strong>the</strong> determination <strong>of</strong> m, five replicate<br />

data on <strong>the</strong> <strong>lag</strong> <strong>phase</strong> experienced by single cells <strong>of</strong> wells were used for each dilution, with 20 replicate<br />

Listeria monocytogenes using <strong>the</strong> Bioscreen and (2) wells being used for dilutions which were close to 0<br />

develop a discrete–continuous <strong>model</strong> which com- cfu/ml.<br />

bines cell adaptation as a property <strong>of</strong> individual cells Viable cells were enumerated for each two-fold<br />

(discrete activity) with a continuous <strong>model</strong> for dilution by spread plating 0.1 ml <strong>of</strong> appropriate serial<br />

bacterial growth.<br />

dilutions in duplicate onto tryptic soy agar (TSA;<br />

Difco Labs.). The plates were incubated at 308C for<br />

48 h and colonies were counted using a Quebec<br />

Colony Counter (Model 15; American Optical, Buf-<br />

2. Materials and methods<br />

2.1. Strains and culture conditions<br />

Dynamic <strong>model</strong>s were created using<br />

©<br />

ModelMaker Version 3.0 (Cherwell Scientific Pub-<br />

lishing, Oxford, UK).<br />

The Gompertz and heterogeneous population<br />

(HPM) (McKellar, 1997) <strong>model</strong>s were fit to growth<br />

data (obtained ei<strong>the</strong>r from actual or simulated cell<br />

®<br />

counts) using Scientist (Micromath Scientific S<strong>of</strong>t-<br />

ware, Salt Lake City, UT, USA). A modified Powell<br />

algorithm was used to minimize <strong>the</strong> sum <strong>of</strong> squared<br />

deviation between observed data and <strong>model</strong> calcula-<br />

tions. Initial parameter estimates were obtained using<br />

simplex optimization. Differential equations were<br />

solved numerically by <strong>the</strong> method <strong>of</strong> Runge–Kutta,<br />

since <strong>the</strong> s<strong>of</strong>tware does not require analytical forms<br />

<strong>of</strong> equations.<br />

Prism Version 2.0 (GraphPad S<strong>of</strong>tware for Intuitive<br />

Science, San Diego, CA, USA) was used to<br />

create plots.<br />

Listeria monocytogenes Scott A (human clinical<br />

isolate) was obtained from <strong>the</strong> culture collection at<br />

<strong>the</strong> Food Research Program (Guelph, Canada). The<br />

culture was grown for 24 h at 308C in tryptic soy<br />

broth (TSB; Difco Labs., Detroit, MI, USA). Stock<br />

cultures were prepared in TSB plus 15% glycerol<br />

(BDH, Toronto, Canada) and were frozen in 0.3-ml<br />

aliquots in cyrovials at 2 258C.<br />

The contents <strong>of</strong> one cyrovial was transferred to 10<br />

ml <strong>of</strong> TSB, incubated for 24 h at 308C in a shaking<br />

waterbath (New Brunswick Scientific, Edison, NJ,<br />

USA) at 1500 rpm. The culture was transferred (1%)<br />

to 10 ml fresh TSB and incubated under <strong>the</strong> same<br />

conditions. The resulting culture was used as <strong>the</strong><br />

inoculum for experiments. API Listeria spp. Identifi-<br />

cation Strip (BioMerieux Canada, St. Laurent,<br />

Canada) was used to confirm <strong>the</strong> identity <strong>of</strong> <strong>the</strong><br />

culture.<br />

2.2. Bioscreen growth experiments<br />

falo, NY, USA).<br />

2.3. Modeling<br />

Serial two-fold dilutions <strong>of</strong> <strong>the</strong> inoculum were 3. Results<br />

made using fresh TSB to obtain a range <strong>of</strong> dilutions<br />

5<br />

representing approximately 10 to 0 cfu/ml. From Kinetic parameters <strong>describing</strong> bacterial growth can<br />

each <strong>of</strong> <strong>the</strong> two-fold dilutions, 0.35 ml was trans- be determined from turbidity data (Cuppers and<br />

ferred to wells <strong>of</strong> a Bioscreen plate (Labsystems, Smelt, 1993). Plots <strong>of</strong> td<br />

obtained from serial dilu-<br />

Helsinki, Finland). The filled plates were placed in tions <strong>of</strong> <strong>the</strong> original inoculum against ln cfu/ml (Fig.<br />

<strong>the</strong> Bioscreen (Labsystems) at an incubation temslope<br />

1) gave straight lines, and m was calculated from <strong>the</strong><br />

perature <strong>of</strong> 308C. Measurements were taken using a<br />

by Eq. (1):<br />

wide band filter, with pre-shaking at medium intensity<br />

for 10 s prior to OD reading; measurements were<br />

1<br />

m 52 ]]<br />

taken every 4 min for 25 h. Results were reported as<br />

Slope<br />

(1)


174 R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180<br />

Table 1<br />

Kinetic parameters for Listeria monocytogenes determined using<br />

a<br />

<strong>the</strong> Bioscreen<br />

Trial t m t S.D. % Growth<br />

d L L<br />

(n520)<br />

A 20.35 1.04 5.86 0.783 60<br />

B 21.32 0.876 4.12 0.814 65<br />

a 21<br />

t<br />

d, Time to detection (h); m, specific growth rate (h ); t<br />

L,<br />

mean individual cell <strong>lag</strong> <strong>phase</strong> duration (h); S.D.<br />

L, standard<br />

deviation <strong>of</strong> <strong>the</strong> mean individual <strong>lag</strong> <strong>phase</strong> duration; % growth,<br />

percent <strong>of</strong> wells showing growth.<br />

single cell per well can be calculated from a Poisson<br />

Fig. 1. Determination <strong>of</strong> specific growth rate (m) and <strong>lag</strong> <strong>phase</strong><br />

duration (t<br />

L) for Listeria monocytogenes using time to detection<br />

distribution:<br />

(t ) data obtained from <strong>the</strong> Bioscreen. Experimental data (d),<br />

2b i<br />

d<br />

e b<br />

simulated data (j). P(X 5 i) 5 ]]<br />

i!<br />

(2)<br />

where P(X5i) is <strong>the</strong> probability <strong>of</strong> finding i cells in<br />

It is also possible to calculate m from cell counts a randomly chosen well, and b is <strong>the</strong> expected value<br />

obtained by using ei<strong>the</strong>r quadratic (McClure et al., <strong>of</strong> that cell number.<br />

1993) or cubic (Stephens et al., 1997) calibration Using <strong>the</strong> observation that 12/20 or 60% <strong>of</strong> wells<br />

curves to convert Bioscreen absorbance data; how- contain one or more cells, <strong>the</strong> value <strong>of</strong> b may be<br />

ever, this method was not employed in <strong>the</strong> present calculated from <strong>the</strong> following equation:<br />

study.<br />

Calculation <strong>of</strong> m using a serial dilution method is<br />

independent <strong>of</strong> <strong>the</strong> absolute numbers <strong>of</strong> cells present.<br />

2b<br />

P(X . 0) 5 1 2 e 5 0.6 (3)<br />

However, it is more difficult to calculate <strong>the</strong> in- Substituting b (0.916) in Eq. (2), it is possible to<br />

dividual cell <strong>lag</strong> <strong>phase</strong> duration (t<br />

L). It was assumed calculate <strong>the</strong> probability <strong>of</strong> finding one (37%) or two<br />

that <strong>the</strong> dilution giving <strong>the</strong> largest td<br />

was equal to ln (17%) cells per well. Thus, as many as five <strong>of</strong> <strong>the</strong> 12<br />

cfu/well50 (Fig. 1). The calculated m was used in wells showing growth could have arisen from more<br />

<strong>the</strong> HPM to predict <strong>the</strong> time required to detect than one cell. This suggests that <strong>the</strong> S.D.<br />

L<br />

values<br />

growth from a defined number <strong>of</strong> cells where <strong>the</strong> must be considered only as estimates for single cells.<br />

6<br />

detection limit <strong>of</strong> <strong>the</strong> Bioscreen is 3.510 cfu/well. A more direct method (such as microscopic examina-<br />

The detection limit was confirmed by means <strong>of</strong> a tion) is needed to obtain accurate distributions <strong>of</strong><br />

calibration curve (data not shown). Fig. 1 shows that single cell tL<br />

values.<br />

©<br />

simulated values for t underestimated <strong>the</strong> ex- The simulation s<strong>of</strong>tware, ModelMaker , was used<br />

d<br />

perimental td<br />

by an amount equivalent to t<br />

L. Note to develop a <strong>combined</strong> discrete–continuous <strong>model</strong><br />

that for each dilution, tL<br />

was constant, thus was which can account for <strong>the</strong> behavior <strong>of</strong> individual<br />

independent <strong>of</strong> cell numbers. Replicate values <strong>of</strong> t cells, and is described in <strong>the</strong> diagram in Fig. 2. Note<br />

L<br />

were calculated from 20 wells by subtracting <strong>the</strong> that <strong>the</strong> various blocks in Fig. 2 are <strong>of</strong> different<br />

simulated value for td<br />

from <strong>the</strong> replicate experimen- shape depending on <strong>the</strong>ir function: compartment<br />

tal values, and <strong>the</strong> resulting mean tL<br />

and standard blocks are rectangular, and <strong>the</strong> values change with<br />

deviations (S.D. ) are given in Table 1 for two trials. time according to user-defined differential equations;<br />

L<br />

S.D.<br />

L<br />

values are based on ,20 wells giving growth; variable blocks have rounded ends, and values are<br />

in <strong>the</strong> two trials reported here 12 and 13 wells, calculated at each time interval according to userrespectively,<br />

showed growth.<br />

defined explicit equations; defined value blocks have<br />

The S.D.<br />

L<br />

values in trial A (Table 1) are based on pointed ends, and values are assigned at t0<br />

or at<br />

<strong>the</strong> supposition that all 12 wells showing growth particular times during <strong>the</strong> simulation; independent<br />

arise from a single cell. The probability <strong>of</strong> finding a<br />

event blocks are hexagonal, and are activated at a


R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180 175<br />

©<br />

Fig. 2. Discrete–continuous <strong>model</strong> designed with ModelMaker to simulate td<br />

and standard deviation <strong>of</strong> individual cell <strong>lag</strong> times (S.D.<br />

L)<br />

based on kinetic parameters derived from Bioscreen data.<br />

pre-defined time; and component event blocks are variation in individual cell <strong>lag</strong> times, t<br />

L, whereas<br />

square, and are activated in response to o<strong>the</strong>r com- S.D. refers to <strong>the</strong> variation between wells observed<br />

ponents in <strong>the</strong> <strong>model</strong>.<br />

with any defined number <strong>of</strong> cells per well.<br />

When <strong>the</strong> <strong>model</strong> run is initiated, <strong>the</strong> AssignLag The <strong>model</strong> described in Fig. 2 was extended to<br />

block (an independent event block activated at t<br />

0)<br />

allow <strong>the</strong> simulation <strong>of</strong> a complete growth curve.<br />

uses a random number generator based on a trun- The discrete adaptation function was retained, and<br />

cated (positive values only) normal distribution with <strong>combined</strong> with <strong>the</strong> HPM to provide <strong>the</strong> continuous<br />

mean tL and S.D.<br />

L<br />

from Table 1 to assign tL<br />

values growth function (Fig. 4). In this <strong>model</strong>, <strong>the</strong> Adaptato<br />

each <strong>of</strong> up to 64 cells. These values are stored in tion block moves one cell from <strong>the</strong> NonGrowing to<br />

<strong>the</strong> defined value Triggers block. The Adaptation <strong>the</strong> Growing compartment at each <strong>of</strong> <strong>the</strong> Trigger<br />

block reads <strong>the</strong>se values, and adds a single cell to <strong>the</strong> times. This preserves <strong>the</strong> initial number <strong>of</strong> cells in<br />

Growing compartment at each time corresponding to <strong>the</strong> <strong>model</strong>. The blocks to calculate <strong>the</strong> log <strong>of</strong> <strong>the</strong> cell<br />

an individual cell t<br />

L. Once in <strong>the</strong> Growing compart- numbers are provided to assist in <strong>the</strong> visualization <strong>of</strong><br />

ment, cells start growing immediately according to a <strong>the</strong> growth curve.<br />

logistic equation (McKellar, 1997):<br />

The output <strong>of</strong> this <strong>model</strong> for a total <strong>of</strong> 64 cells is<br />

shown in Fig. 5. Note that values <strong>of</strong> <strong>the</strong> <strong>the</strong> Growing<br />

dG G compartment are not shown where <strong>the</strong> number <strong>of</strong><br />

] 5 Gm S1 2 ]] D (4)<br />

dx N max<br />

cells was zero. These results show that <strong>the</strong> simulated<br />

values for <strong>the</strong> NonGrowing cells decreased as <strong>the</strong><br />

where G is <strong>the</strong> number <strong>of</strong> cells in <strong>the</strong> Growing numbers <strong>of</strong> Growing cells increased. When <strong>the</strong> total<br />

compartment and Nmax<br />

is <strong>the</strong> maximum population<br />

density.<br />

The LogGrowing block calculates <strong>the</strong> log cfu, and<br />

at each time increment <strong>the</strong> component event Monitor<br />

block tests to see if <strong>the</strong> value <strong>of</strong> LogGrowing has<br />

6<br />

exceeded <strong>the</strong> detection limit (defined as 3.510<br />

cfu/well). The defined value TimetoDetection block<br />

holds <strong>the</strong> calculated t<br />

d.<br />

The <strong>model</strong> in Fig. 2 was used to simulate values<br />

for td<br />

corresponding to up to 32 cells per well. The<br />

simulated S.D. values were derived from a total <strong>of</strong><br />

20 simulations for each <strong>of</strong> 1, 2, 4, 8, 16 or 32 cells<br />

per well. Fig. 3 shows that both <strong>the</strong> simulated td<br />

and<br />

S.D. values are in close agreement with <strong>the</strong> ex- Fig. 3. Comparison <strong>of</strong> t<br />

d<br />

(s) and S.D.<br />

L<br />

(h) from experimental<br />

perimental findings. Note that S.D. refers to <strong>the</strong> data (open symbols) or simulated data (closed symbols).<br />

L


176 R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180<br />

©<br />

Fig. 4. Discrete–continuous <strong>model</strong> designed with ModelMaker<br />

to simulate a complete bacterial growth curve.<br />

Fig. 5. Output <strong>of</strong> discrete–continuous <strong>model</strong> showing number <strong>of</strong><br />

cells present in <strong>the</strong> NonGrowing (s) and Growing (d) compartments,<br />

and <strong>the</strong> total <strong>of</strong> both compartments (h).<br />

(McKellar, 1997). The results in Table 2 show good<br />

agreement between <strong>the</strong> simulated growth curves<br />

based on Bioscreen data, and <strong>the</strong> actual growth<br />

curves derived from plate count data. Values for m<br />

were lower with <strong>the</strong> HPM (0.918–1.09) as compared<br />

to <strong>the</strong> Gompertz (1.03–1.26), and were similar for<br />

Bioscreen (0.918–1.26) and viable count data (1.03–<br />

1.26). The l values were larger with <strong>the</strong> Bioscreen<br />

as compared to viable counts, with <strong>the</strong> HPM giving<br />

shorter l times than <strong>the</strong> Gompertz with <strong>the</strong> exception<br />

<strong>of</strong> Trial D. Fig. 6 shows a comparison between one<br />

experimental and one simulated growth curve both fit<br />

with <strong>the</strong> Gompertz function. When discussing <strong>lag</strong><br />

times, it should be noted that <strong>the</strong> symbol l is<br />

reserved for <strong>the</strong> population <strong>lag</strong> <strong>phase</strong> duration calcu-<br />

lated from growth curves (ei<strong>the</strong>r viable count or<br />

number <strong>of</strong> cells in <strong>the</strong> <strong>model</strong> was calculated, <strong>the</strong><br />

Table 2<br />

resulting curve represents <strong>the</strong> transition from <strong>the</strong> <strong>lag</strong> Kinetic parameters for Listeria monocytogenes determined using<br />

<strong>phase</strong> to <strong>the</strong> exponential <strong>phase</strong>.<br />

non-linear regression<br />

The ability <strong>of</strong> <strong>the</strong> discrete–continuous <strong>model</strong> to<br />

a<br />

Trial Method Gompertz HPM<br />

simulate actual growth curves was fur<strong>the</strong>r tested by<br />

c d<br />

comparing <strong>the</strong> simulated output with growth curves<br />

m l m l<br />

derived from plate count data. Simulated growth A Bioscreen 1.26 6.55 1.09 5.86<br />

curves were created using <strong>the</strong> values for t and S.D. B Bioscreen 1.03 4.71 0.918 4.25<br />

L<br />

L<br />

C Counts 1.03 3.02 0.932 2.92<br />

from Table 1 (with N0 and Nmax being set at 64 and<br />

9<br />

D Counts 1.10 2.22 1.02 2.40<br />

10 cells, respectively), and were fit with <strong>the</strong> Gom- b<br />

Reference Counts 1.04 2.79 0.882 1.89<br />

pertz and <strong>the</strong> HPM (Table 2, trials A and B).<br />

a Heterogeneous population <strong>model</strong>.<br />

Experimental growth curves at 308C were also fit b Data taken from a previous study (McKellar, 1997).<br />

with <strong>the</strong> Gompertz and <strong>the</strong> HPM (Table 2, trials C<br />

c 21<br />

m, specific growth rate (h ).<br />

d<br />

and D). The reference trial is from a previous study l, Population <strong>lag</strong> <strong>phase</strong> duration (h).


R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180 177<br />

Fig. 8. Replicate simulations using <strong>the</strong> discrete–continuous <strong>model</strong><br />

Fig. 6. Comparison <strong>of</strong> simulated (s) and experimental (d)<br />

(Fig. 2) with three different random seed numbers for normal<br />

growth curves fit with <strong>the</strong> Gompertz function.<br />

(open symbols) and exponential (closed symbols) distributions. t d<br />

values were simulated for a total <strong>of</strong> 20 wells at each <strong>of</strong> 1, 2, 4, 8,<br />

16 or 32 cells per well, with tL<br />

and S.D.<br />

L<br />

values taken from trial A<br />

(Table 1).<br />

simulated) using a non-linear curve fitting routine,<br />

while <strong>the</strong> symbol tL<br />

refers to <strong>the</strong> mean individual cell<br />

<strong>lag</strong> times determined using <strong>the</strong> Bioscreen.<br />

or an exponential (Baranyi, 1998) distribution for 20<br />

The influence <strong>of</strong> <strong>the</strong> S.D. at constant t on <strong>the</strong> l replicate wells each containing 1, 2, 4, 8, 16 or 32<br />

L<br />

L<br />

is shown in Fig. 7. When <strong>the</strong> S.D. is small (open cells. A different random number seed was used for<br />

L<br />

circles) <strong>the</strong> adaptation is rapid, as all <strong>the</strong> cells adapt each replicate simulation. tL and S.D.<br />

L<br />

values (nor-<br />

at approximately <strong>the</strong> same time. As <strong>the</strong> S.D. L<br />

mal distributions) were taken from trial A in Table 1,<br />

increases to a maximum (open triangles), <strong>the</strong> number and tL<br />

values for <strong>the</strong> exponential distributions were<br />

<strong>of</strong> cells adapting earlier than <strong>the</strong> majority increases. adjusted lower in order to separate <strong>the</strong> two data sets.<br />

These cells quickly dominate, and <strong>the</strong> result is a Fig. 8 shows that, with an exponential distribution,<br />

shorter l.<br />

<strong>the</strong> td<br />

values deviate from linearity when <strong>the</strong> number<br />

The influence <strong>of</strong> distribution type was also ex- <strong>of</strong> cells per well ,4. Mean individual cell td<br />

values<br />

amined. Replicate simulations were performed with (1 cell per well) varied considerably depending on<br />

<strong>the</strong> discrete–continuous <strong>model</strong> using ei<strong>the</strong>r a normal <strong>the</strong> random number seed. In contrast, simulations<br />

using normal distributions were linear over <strong>the</strong> whole<br />

range <strong>of</strong> cell numbers, and random number seed had<br />

little apparent effect.<br />

4. Discussion<br />

Fig. 7. Effect on S.D.<br />

L<br />

on apparent population <strong>lag</strong> <strong>phase</strong> duration<br />

(l), where S.D.<br />

L<br />

is: 0.0 (s); 0.3 (d); 0.6 (h); 0.9 (j); and 1.2<br />

(^).<br />

A discrete–continuous <strong>model</strong> has been developed<br />

which improves our understanding <strong>of</strong> <strong>the</strong> behavior <strong>of</strong><br />

cells during <strong>the</strong> period <strong>of</strong> adaptation generally referred<br />

to as <strong>the</strong> ‘‘<strong>lag</strong> <strong>phase</strong>’’. In this <strong>model</strong> <strong>the</strong> <strong>lag</strong><br />

<strong>phase</strong> is described by two parameters, <strong>the</strong> mean<br />

individual cell <strong>lag</strong> time, t<br />

L, and <strong>the</strong> standard deviation<br />

<strong>of</strong> <strong>the</strong> variation between tL<br />

values, S.D.<br />

L. When<br />

<strong>the</strong>se two parameters are used with m, N<br />

0, and N<br />

max,<br />

a complete growth curve can be simulated. It should<br />

be noted that a key assumption <strong>of</strong> this <strong>model</strong> is that


178 R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180<br />

<strong>the</strong> tL<br />

is independent <strong>of</strong> cell number. The substance limited fitting <strong>of</strong> <strong>the</strong> discrete–continuous <strong>model</strong> to<br />

<strong>of</strong> <strong>the</strong> present study was presented previously (McK- experimental data, and will form <strong>the</strong> basis <strong>of</strong> a later<br />

ellar, 1998).<br />

publication.<br />

The present study also reports, for <strong>the</strong> first time, Baranyi and Pin (1999) have also recently pro<strong>the</strong><br />

inclusion <strong>of</strong> a discrete step into <strong>the</strong> <strong>model</strong>ing <strong>of</strong> posed a method for calculating l and m from t<br />

d.<br />

bacterial growth; all o<strong>the</strong>r published <strong>model</strong>s are Their method is based on <strong>the</strong> biological interpretabased<br />

on continuous functions only. This improve- tion <strong>of</strong> <strong>the</strong> initial physiological state <strong>of</strong> <strong>the</strong> cells,<br />

ment is critical to <strong>the</strong> <strong>model</strong>ing <strong>of</strong> single cell where <strong>the</strong> suitability for growth is represented by a<br />

behavior during <strong>the</strong> adaptation period prior to initia- fraction <strong>of</strong> <strong>the</strong> initial cell population. This interpretation<br />

<strong>of</strong> growth, and is facilitated by <strong>the</strong> use <strong>of</strong> an tion is similar to <strong>the</strong> one suggested by McKellar<br />

object-oriented programing environment such as (1997) who attributed <strong>the</strong> potential for growth to a<br />

®<br />

ModelMaker . Individual-based <strong>model</strong>s (IBMs) sub-population <strong>of</strong> <strong>the</strong> inoculum. The Baranyi and Pin<br />

have been used extensively in ecological <strong>model</strong>ing approach uses an analysis <strong>of</strong> variance (ANOVA)<br />

situations (Grimm, 1999; Lomnicki, 1999), but have method to deal with variability <strong>of</strong> low cell populayet<br />

to be applied in food microbiology. Providing a tions to estimate a value for m. Values for tL<br />

are<br />

dynamic environment for <strong>the</strong> simulation <strong>of</strong> bacterial calculated using <strong>the</strong> m and <strong>the</strong> physiological state <strong>of</strong><br />

growth based on <strong>the</strong> use <strong>of</strong> differential ra<strong>the</strong>r than <strong>the</strong> inoculum. In <strong>the</strong> present study, values for m are<br />

explicit equations is also considered important for estimated using a wider range <strong>of</strong> dilutions than<br />

<strong>the</strong> future development <strong>of</strong> bacterial growth <strong>model</strong>s reported by Baranyi and Pin, thus minimizing <strong>the</strong><br />

(Baranyi, 1997). Common s<strong>of</strong>tware packages which influence <strong>of</strong> higher variance.<br />

are generally used for non-linear regression do not Buchanan et al. (1997) describe <strong>the</strong> <strong>lag</strong> <strong>phase</strong> by<br />

have this capability, thus <strong>the</strong> use <strong>of</strong> s<strong>of</strong>tware such as <strong>the</strong> following equation:<br />

®<br />

ModelMaker leads to <strong>the</strong> development <strong>of</strong> more<br />

tLag 5 ta 1 t<br />

m<br />

complex <strong>model</strong>s incorporating <strong>the</strong> multiple steps<br />

(5)<br />

involved in adaptation and growth.<br />

where ta<br />

is <strong>the</strong> time required for <strong>the</strong> cells to adapt to<br />

A <strong>the</strong>oretical <strong>model</strong> which accounts for <strong>the</strong> be- <strong>the</strong>ir new environment, and tm<br />

is <strong>the</strong> generation time.<br />

havior <strong>of</strong> individual cells has been suggested by The present <strong>model</strong> assumes that growth starts imme-<br />

Buchanan et al. (1997), who were <strong>the</strong> first to propose diately after <strong>the</strong> adaptation step, thus t (this study)<br />

L<br />

that <strong>the</strong> transition between <strong>lag</strong> and exponential is equivalent to t<br />

a.<br />

<strong>phase</strong>s resulted from biological variation among<br />

Baranyi (1998) has recently compared stochastic<br />

and deterministic concepts <strong>of</strong> <strong>the</strong> <strong>lag</strong> <strong>phase</strong>, and has<br />

suggested that <strong>the</strong> l is always less than <strong>the</strong> t<br />

L. This<br />

individual cells. These workers provided a <strong>the</strong>oretical<br />

basis for <strong>describing</strong> <strong>the</strong> <strong>lag</strong> <strong>phase</strong> in terms <strong>of</strong><br />

individual cells; however, <strong>the</strong>y proposed a simpler, seems reasonable, since increased S.D.<br />

L<br />

at constant<br />

three-<strong>phase</strong> <strong>model</strong> for general use which did not tL<br />

resulted in a shorter l in <strong>the</strong> present study (Fig. 7)<br />

account for inter-cell variation. The present <strong>model</strong> and also in <strong>the</strong> @RISK simulations reported by<br />

builds on this foundation by <strong>the</strong> addition <strong>of</strong> tur- Buchanan et al. (1997). It is intuitively obvious that<br />

bidimetric data which provides evidence for indi- l can only be equal to tL<br />

in <strong>the</strong> special case where<br />

vidual cell behavior, and incorporates this variability <strong>the</strong> cells all adapt simultaneously (e.g., S.D.<br />

L50). In<br />

into <strong>the</strong> <strong>model</strong> as a distinct parameter (S.D.<br />

L).<br />

<strong>the</strong> present study using simulated growth curves, l<br />

Buchanan et al. (1997) used <strong>the</strong> risk analysis s<strong>of</strong>t- was greater than tL<br />

when determined by <strong>the</strong> Gom-<br />

ware, @RISKE, to simulate <strong>the</strong> variability between pertz function, and identical to tL<br />

in one <strong>of</strong> two trials<br />

cells, but fit only <strong>the</strong> three-<strong>phase</strong> linear <strong>model</strong> to using <strong>the</strong> HPM. This may be due to <strong>the</strong> inherent<br />

error associated with estimations <strong>of</strong> l from fitting<br />

data with non-linear regression functions. It is also<br />

worth mentioning that nei<strong>the</strong>r <strong>the</strong> Gompertz nor <strong>the</strong><br />

HPM are intended for fitting data derived from<br />

distributions <strong>of</strong> individual cell properties, since nei-<br />

<strong>the</strong>r <strong>of</strong> <strong>the</strong>se <strong>model</strong>s can account for changes in<br />

curvature between <strong>lag</strong> and exponential <strong>phase</strong>s under<br />

experimental data. Since <strong>the</strong> present <strong>model</strong> contains<br />

a random number generator, it was not possible to fit<br />

experimental data using <strong>the</strong> optimization algorithms<br />

®<br />

in ModelMaker , thus optimization must be performed<br />

manually. It will be possible, however, to<br />

construct tables <strong>of</strong> distributions with varied S.D.<br />

L<br />

which can be read into <strong>the</strong> <strong>model</strong>. This will allow


R.C. McKellar, K. Knight / International Journal <strong>of</strong> Food Microbiology 54 (2000) 171 –180 179<br />

<strong>the</strong> control <strong>of</strong> <strong>the</strong> S.D.<br />

L<br />

parameter. An example <strong>of</strong> possibility that some cells do not grow has not been<br />

this is evident in Fig. 6; <strong>the</strong> Gompertz function fit to considered. Thus <strong>the</strong> S.D.<br />

L<br />

must be considered an<br />

a discrete–continuous <strong>model</strong> simulation shows sys- estimate <strong>of</strong> <strong>the</strong> value for single cell variability. In<br />

tematic deviations. Systematic differences between l spite <strong>of</strong> this limitation, <strong>the</strong> discrete–continuous<br />

predicted by several <strong>model</strong>s including <strong>the</strong> three- <strong>model</strong> based on estimated tL<br />

and S.D.<br />

L<br />

values gives<br />

<strong>phase</strong> linear <strong>model</strong> <strong>of</strong> Buchanan and <strong>the</strong> Baranyi a good fit to <strong>the</strong> experimental data. More accurate<br />

<strong>model</strong> have been reported (Buchanan et al., 1997). estimates <strong>of</strong> single cell variance might be obtained<br />

These observations may even suggest that once using improved methods <strong>of</strong> single cell analysis (e.g.,<br />

individual cell behavior can be <strong>model</strong>ed accurately, microscopy).<br />

<strong>the</strong> traditional concept <strong>of</strong> population <strong>lag</strong> (l) as a<br />

<strong>model</strong>ing parameter will be <strong>of</strong> limited fur<strong>the</strong>r value<br />

to predictive microbiology.<br />

It is difficult to compare <strong>the</strong> discrete–continuous<br />

Acknowledgements<br />

<strong>model</strong> with <strong>the</strong> Baranyi <strong>model</strong> since <strong>the</strong> latter does The authors would like to thank J. Baranyi for<br />

not include a parameter <strong>describing</strong> <strong>the</strong> influence <strong>of</strong> helpful criticism <strong>of</strong> <strong>the</strong> manuscript.<br />

variation in tL<br />

on l. Baranyi (1998) has suggested<br />

that <strong>the</strong> mean population <strong>lag</strong> [l(N)] increases with<br />

lower inoculum, assuming tL<br />

values are exponentially<br />

distributed. In <strong>the</strong> present study a normal distribution<br />

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