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Patterns, Profiles, Domains and Motifs Theory - CNB - Protein ...

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Hidden Markov Models II<br />

The model has three residues or states (m 1<br />

, m 2<br />

, m 3<br />

) with 20<br />

probabilities to be a residue (bars), one state which is insertion (eg i 0<br />

)<br />

<strong>and</strong> one state which relates to deletion (eg d 1<br />

). The arrows represent<br />

the probability of the transition between each state.

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