Plugins - mipav

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Plugin Lab • Install • PlugInCT_MD – already in MIPAV • MuscleSegmentation – http://dcb.cit.nih.gov/~senseneyj/code/muscleSeg.html • Bio-Formats - http://dcb.cit.nih.gov/~ senseneyj/code/bioformats.html • ImageJ – http://dcb.cit.nih.gov/~senseneyj/code/imagej.html 16
<strong>Plugins</strong> from command line • Mipav –p Plugin_Name • Can be run headless 17
Page 1 and 2: Plugins http://mipav.cit.nih.gov 1
Page 3 and 4: Justin Senseney Medical Image Proce
Page 6 and 7: Plugins • PlugInAlgorithm - Devel
Page 8 and 9: Plugins - Location • Stored for e
Page 10 and 11: Plugins - Installing • Installing
Page 12 and 13: Plugins - Executing 12
Page 14 and 15: Script Running Review 14
Page 18 and 19: Break - Review • Plugins • File
Page 20 and 21: Download Eclipse • Download here:
Page 22 and 23: Fix Eclipse ecify Memory 22
Page 24 and 25: Java Programs • Virtual machine =
Page 26 and 27: Add JRE 26
Page 28 and 29: Locate JRE 28
Page 30 and 31: Make Mipav Project 30
Page 32 and 33: Mipav Program • Execution environ
Page 34 and 35: • Libraries • PDFbox • JPEG20
Page 36 and 37: More Jars 36
Page 38 and 39: More Jars: ITK 38
Page 40 and 41: External class folder Select the co
Page 42 and 43: MipavMain 42
Page 44 and 45: New Configuration 44
Page 46 and 47: -Xms (min), -Xmx (max) Java Memory
Page 48 and 49: Run Mipav • MipavMain is executed
Page 50 and 51: View JVM Info 50
Page 52 and 53: Java Compiler • Source code: •
Page 54 and 55: Import NewGeneric2 • In Eclipse:
Page 56 and 57: Install NewGeneric2 • Only instal
Page 58 and 59: Look at NewGeneric2 • Open Dialog
Page 60 and 61: Run NewGeneric2 • See change: 60
Page 62 and 63: MIPAV Documentation • CTRL-click
Page 64 and 65: Plugins - MIPAV API Attach here: 64
Page 66 and 67:
Modify Plugin Lab 10pt • Edit Plu
Page 68 and 69:
Summary • Plugins - Unique functi
Page 70:
http://mipav.cit.nih.gov 70
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