Volume 2, Algorithms - mipav - National Institutes of Health

M I P A V
M e d i c a l I m a g e P r o c e s s i n g, A n a l y s i s, & V i s u a l i z a t i o n
Chapter 2, Using MIPAV Algorithms:
Figure 17. The MIPAV Segmentation PDF file.......................................................594
Figure 18. Showing the LUT for selected VOIs ...................................................... 595
Figure 1. The plots of the Correlation Ratio cost function versus some of the
individual parameter values. In each plot (A, B, C, and D), a single parameter is
varied while the other are kept constant................................................................ 597
Figure 2. Calculating the center of mass (COM)................................................... 600
Figure 3. levelEight optimization ...........................................................................603
Figure 4. The input image (A), reference image (B) and result image (C).
Registration was performed using the default algorithm settings. ...................... 608
Figure 5. The Optimized Automatic Registration dialog box options ...................609
Figure 6. The Advanced Optimized Automatic Registration (constrained) dialog
box options ............................................................................................................. 612
Figure 1. Patient Position (DICOM) algorithm processing.................................... 615
Figure 1. Landmark—Least Squares processing ....................................................620
Figure 2. Least Squares Registration dialog box....................................................622
Figure 1. Example of Registration: Landmark—TPSpline algorithm....................624
Figure 2. Thin Plate Spline Registration dialog box ..............................................626
Figure 1. Registration: Manual 2D Series window................................................. 627
Figure 2. The Load dialog box ................................................................................630
Figure 3. The Blended page of the Manual 2D Series window showing the
adjusted image moved down and to the right........................................................635
Figure 4. Manual 2D Series window showing center of rotation .......................... 637
Figure 5. Manual 2D Series window showing the Blended page...........................638
Figure 6. Manual 2D Series window showing the Dual page ................................ 641
Figure 7. Manual 2D Series window.......................................................................644
Figure 1. Calculating the rotation angle ................................................................. 647
Figure 2. The translation is calculated based on the mouse's X and Y coordinates
before and after translation....................................................................................648
MIPAV User’s Guide, Volume 2, Algorithms 36
12/5/08