Scripting - mipav

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<strong>Scripting</strong> MIPAV and the Java Image Science Toolkit Evan McCreedy email: mccreedy@mail.nih.gov (301) 496-3323 Biomedical Image Processing Research Services Section (BIRSS) http://<strong>mipav</strong>.cit.nih.gov 2
MIPAV Team Employees Ruida Cheng William Gandler Matthew McAuliffe Evan McCreedy Justin Senseney Fellows Sara Shen Contractors Alexandra Bokinsky, Geometric Tools Inc. (Visualization) Olga Vovk, SRA International Inc. (Technical Writing) Alumni Paul Hemler, Agatha Munzon, Nishith Pandya, Beth Tyriee, Hailong Wang 3
Page 1: http://mipav.cit.nih.gov 1
Page 5 and 6: Usability • Most NIH intramural r
Page 7 and 8: Scripting (Macros) • Automation o
Page 9 and 10: Scripting Run script Record script
Page 11 and 12: Recording A Script Resets the scrip
Page 13 and 14: Script Example - GaussianBlur(“in
Page 15 and 16: Running a Script 15
Page 17 and 18: Running a Script 17
Page 19 and 20: Calling a Script from the DOS comma
Page 21 and 22: Writing a Script for Batch Processi
Page 23 and 24: Lab for Batch Processing with MIPAV
Page 25 and 26: Command Line Notes • Use the -hid
Page 27 and 28: Installing JIST • Install MIPAV -
Page 29 and 30: JIST Plugin Selector • Useful for
Page 31 and 32: JIST Process Manager • Run from t
Page 33 and 34: Visualization Processing Macros/Plu

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