Deconvolution Analysis of FMRI Time Series Data - Waisman ...

-stim le k "sname[j]"In this case, the -stim le command species that the kth input stimulus function iscontained in column j of le sname. Note: The column indexing begins with 0 i.e., therst column corresponds to j = 0, etc. Also note that the square brackets around thecolumn index must be enclosed within quotation marks.-stim label k slabelThe optional -stim label command is used to specify the string slabel for labeling theoutput corresponding to the kth input stimulus function.-stim minlag k mThe optional -stim minlag command species the minimum time lag m for estimation ofthe impulse response function corresponding to the kth input stimulus. The default valueis m =0.-stim maxlag k nThe optional -stim maxlag command species the maximum time lag n for estimation ofthe impulse response function corresponding to the kth input stimulus. The default valueis n =0. Note that for each input stimulus, it is required that: min lag max lag.-stim nptr k pThe optional -stim nptr command species that there are p (p = 1 2 3:::) time pointsin the kth input stimulus for each TR. The default value is p =1. If the input 3d+timedataset contains N points, then the kth input stimulus must contain at least p N points.If p>1, then the user must align all input slices to 0 time oset beforehand (see program3dTshift). Note: The IRF time limits specied with -stim minlag and -stim maxlag are inmultiples of TR=p. Therefore, the commands:-stim minlag k m-stim maxlag k n-stim nptr k pindicate that the kth IRF extends from m TR=p to n TR=p.-num glt gThe -num glt command is used to indicate that g general linear tests will be used. The-num glt command is optional except when g > 10. Note: The -num glt command mustprecede the following -glt commands.-glt s gltnameThe optional -glt command is used to conduct a general linear test. The parameters species the number of linear combinations (or linear constraints) in the general lineartest. The matrix which determines the general linear test must be contained in le gltname.Note that the matrix must contain s rows, each row specifying a linear constraint on the23