Eukaryotic Gene Prediction - Rice Genome Annotation Project

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Expression DataData TypeEST/FL-cDNAPeptideMPSSSAGEMicroarrayTiling arrayData SourcePASA/Manual curationKoller et al., PNAS, 2002 (6,296peptides/2,528 fgenesh models)Blake Meyers (http://mpss.udel.edumpss.udel.edu/rice/)126,663 tags from MGOS(http://www.mgosdb.orgwww.mgosdb.org/sage/)NSF <strong>Rice</strong> Oligonucleotide Array project(http://www.ricearraryricearrary.org)Deng lab, Yale University
Expression Data in Gbrowse
Page 3: Gene Structure
Page 7 and 8: Gene Prediction Approaches Intrinsi
Page 9 and 10: Development of a Gene Finder Build
Page 11 and 12: Nucleotide level Exon level Gene le
Page 13 and 14: Exon LevelPrediction accuracy with
Page 15 and 16: A Simple CalculationGiven x accurac
Page 17 and 18: Maize Gene Prediction
Page 19 and 20: Accuracy
Page 21 and 22: Gene Prediction Approaches Intrinsi
Page 23 and 24: EST/cDNA Spliced Alignment
Page 25 and 26: Genomic ComparisonMicrosynteny betw
Page 27 and 28: Comparative Analysis of CerealGene
Page 29 and 30: Pros and ConsProsAid to identify lo
Page 31 and 32: ARTADE-ARabidopsisTiling-Array-base
Page 33 and 34: Gene Discovery via Multiple GeneFin
Page 35 and 36: TIGR Rice Genome AnnotationPipeline
Page 37 and 38: EnsemblGenePredictionProcedure
Page 39 and 40: Case Study
Page 41: Create a Gene Model
Page 45 and 46: Ovary and mature stigma
Page 47: “Have no fear of perfection -you'

Eukaryotic Gene Prediction - Rice Genome Annotation Project

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