Henning Hermjakob - ProteomeBinders

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Requirements gathering• What are the use cases for data exchange betweenbinder resources and users?• Which data types and attributes are required in each ofthese use cases?• Detailed requirements gathering, feedback fromparticipants of ProteomeBinders• ProtemeBinders workshop St. Emillion, July 2006• ProtemeBinders Deliverable - doneHenning HermjakobProteomics Services TeamProteomeBindersAlpbach meeting, March 2007
Data model development• Mapping requirements to PSI MI data model• For all relevant data items, check if they can be consistentlymapped to the PSI MI data model• HUPO PSI workshop Washington, September 2006• ProtemeBinders workshop Cambridge, December 2006Henning HermjakobProteomics Services TeamProteomeBindersAlpbach meeting, March 2007
Page 1 and 2: Designing a Binder DatabaseProteome
Page 3 and 4: Initiatives for Proteome Binderdeve
Page 5 and 6: Data fragmentation• Difficult to
Page 7 and 8: HUPO PSI MI XML format• Community
Page 9 and 10: PSI MI components• XML format•
Page 11: Working hypothesis:Binder-Target bi
Page 15 and 16: Next steps• Development of protot
Page 17: Acknowledgements• Sandrine Palcy,

Henning Hermjakob - ProteomeBinders

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