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str(InsectSprays)‘data.frame’: 72 obs. of 2 variables:$ count: num 10 7 20 14 14 12 10 23 17 20 ...$ spray: Factor w/ 6 levels “A”,”B”,”C”,”D”,..: 1 1 1 1 1 1 1 1 1 1 ...This dataset contains the results of an agricultural experiment. Six insecticideswere tested on 12 fields each, and the researchers counted the number of peskybugs that remained on each field. Now the farmers need to know if the insecticidesmake any difference, and if so, which one they best use. You answer this questionby using the aov() function to perform an ANOVA.Building the modelFor this simple example, building the model is a piece of cake. You essentiallywant to model the means for the variable count as a function of the variable spray.You translate that to R like this:> AOVModel
AOVModelCall:aov(formula = count ~ spray, data=InsectSprays)Terms:spray ResidualsSum of Squares 2668.833 1015.167Deg. of Freedom 5 66Residual standard error: 3.921902Estimated effects may be unbalancedThis doesn’t tell you that much, apart from the command (or the call) youused to build the model and some basic information on the fitting result.In the output, you also read that the estimated effects may be unbalanced.This isn’t a warning as described in Chapter 10 — it’s a message that’s built in bythe author of the aov() function. This one can pop up in two situations:You don’t have the same number of cases in every group.You didn’t set orthogonal contrasts.In this case, it’s the second reason. You can continue with this model as we donow (that’s also how those models are fitted in SPSS and SAS by default) or youcan read the nearby sidebar, “Setting the contrasts,” and use contrasts as thestatistical experts who wrote R think you should.Evaluating the differencesTo check the model, you can use the summary() function on the model objectlike this:> summary(AOVModel)Df Sum Sq Mean Sq F value Pr(>F)spray 5 2669 533.8 34.7
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Running code without a compilerChap
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Creating errorsCreating warningsRec
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Analyzing tablesExtracting test res
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Working with Pivot TablesUsing the
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R For Dummies ®Published byJohn Wi
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About the AuthorsAndrie de Vries: A
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my choices. Professor Bruce Hardie
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IntroductionWelcome to R For Dummie
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: The prompt symbol, >, is not part
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You want to explore new stuff. You
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Icons Used in This BookAs you read
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Chapter 1Introducing R: The Big Pic
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eferred to as “free as in beer.
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you how to move data and graphics b
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If you have experience in other lan
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variables, get to look at the built
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Below all this information is the R
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that we use it to illustrate the ex
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Starting Your First R SessionIf you
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Using R as a calculator is very int
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Sourcing a ScriptUntil now, you’v
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Finding help on functionsWe discuss
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languages, the backslash character
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Vectorizing your functionsVectorize
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print()R tells you that it needs th
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extensions that much. But using .Rh
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Choosing a clear nameWhen Joris was
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opinions, so the naming of function
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Often, you want to add a bit of ext
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all of them at the beginning of eac
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Part IIGetting Down to Work in RIn
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calculator.Vector operations: Vecto
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Suppose that Granny and Geraldine d
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FunctionWhat It Doesabs(x)log(x,bas
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decision to use scientific notation
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operations in Chapter 7.Actually, o
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NaN in calculations. The outcome of
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Take a look at the vector baskets.o
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way the value is stored in memory.R
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[1] 12 4 4 6 9 3 5 3 2 2 12 9The re
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Okay, this example isn’t too impr
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R doesn’t have an Undo button, so
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x < yx baskets.of.Granny > 5[1] TR
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that value (refer to “Dealing wit
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all(). To find out whether Granny w
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You can tell quite a few things abo
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third game, and so on.The vector re
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1st 2nd 3rd 4th 5th 6th-67 25 20 50
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In this section, you take a look at
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LETTERS[24:26][1] “X” “Y”
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Creating and assigning named vector
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Similar to the way that R displays
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[1] “The quick brown FOX jumps ov
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R performs lexicographic sorting, a
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The result of grep() is a numeric v
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Suppose you have the sentence He is
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Regular expressions allow three way
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lexicographically sorted, unique va
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difference between the levels and t
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vector subsisting rules. For exampl
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table(state.region)state.regionNort
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Chapter 6Going on a Date with RIn T
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startDate xm xm[1] “2012-01-01
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Table 6-2 Some Format Codes for Dat
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As you can see, as.POSIXct() takes
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Formatting Dates and TimesTo format
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Now you know the exact time when we
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project.org/web/packages/lubridate/
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They contain only a single type of
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To get only the number of rows, you
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[1,] 1 4 7 10[2,] 2 5 8 11[3,] 3 6
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id first.matrix[-id][1] 1 2 3 4 5
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[2,] 2 5 8 11[3,] 3 4 9 12You also
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the way. You can try that out yours
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constructing a matrix second.matrix
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[2,] 4 5 6[3,] 7 8 9[4,] 10 11 12Yo
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Using the creator functionsYou can
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[2,] 5 17[3,] 8 20[4,] 11 23This re
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[1] 6Likewise, the ncol() function
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data frame with character vectors o
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section, earlier in this chapter.Ex
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As explained in the “Combining ve
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Create a matrix with two columns.Cr
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Although the row names of the data
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you, because data frames are, in fa
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You can’t use logical vectors or
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askets.nlist baskets.nlist[‘scor
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The second line contains a $, which
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Part IIICoding in RIn this part . .
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Making the scriptSuppose you want t
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There’s no way you can define in
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Luckily, this problem doesn’t occ
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addPercent
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addPercent(new.numbers)Error in x *
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list instead of using the dots.So,
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code. So, instead of giving a funct
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Instead of passing the code of the
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Using internal functionsWriting you
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weird, think again about data frame
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print.default(small.one)$a[1] 1 2$b
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can easily add a default method exa
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carry out a certain task. Many prog
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if you have only one short line of
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you do so within a function and you
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second value of the result.4. A vec
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Luckily, R allows you to write all
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VAT client switch(client, private
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3. In each round through the loop,
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workspace. This may be exactly what
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Applying functions on rows and colu
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4 6 8You can pass any arguments you
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hours public type“numeric” “l
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Chapter 10Debugging Your CodeIn Thi
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R always tells you in which code th
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If you get warning or error message
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logit() function. Even more, the tr
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When you’re in browser mode, you
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function only until the next round
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In logit(as.numeric(x)/100) : x not
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owsum.df strsplit(‘this is a sen
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If you want to know the median numb
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typing help(paste) returns help abo
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From the description of ada::update
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Getting Involved in the R Community
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can ask and answer questions on a v
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[1] “Diamonds 2” “Clubs 2”
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[1] RCurl_1.6-10.1 tools_2.14.1The
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Chapter 12Getting Data into and out
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Using the Clipboard to copy and pas
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Using special characters in escape
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‘data.frame’: 10 obs. of 9 vari
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XLConnect also can write Excel file
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These functions need a specific fil
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Working with Files and FoldersYou k
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[1] “F:/git/roxygen2/roxygen2/REA
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can confirm this by taking a close
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But in many practical situations, y
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$: The dollar-sign operator selects
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To illustrate subsetting of data fr
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customary to specify a so-called se
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Specify a logical vector, where FAL
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After a short while of writing subs
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following:> frost head(frost, 5)Al
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Figure 13-1: Different ways of comb
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function tries to identify columns
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Both data frames have a variable Na
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time, %in% is in infix operator. An
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order. Do this using the order() fu
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Sorting multiple columns in mixed o
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FUN: The function to apply (for exa
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5.843333 3.057333 3.758000 1.199333
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with(cars, tapply(mpg, list(gear, a
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Page 319 and 320: Chapter 14Summarizing DataIn This C
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Page 376 and 377: Chapter 16Using Base GraphicsIn Thi
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Page 410 and 411: Chapter 18Looking At ggplot2 Graphi
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aes() function to set up the mappin
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visual elements is the second eleme
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geom_point() Scatterplot stat_ident
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Creating line chartsTo create a lin
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Stat Description Default Geomstat_b
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Doing nothing with identitySometime
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Working with scalesIn ggplot2, scal
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Part VIThe Part of TensIn this part
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Then calculate the sum and mean for
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first supplied value as a fixed poi
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with(mtcars, length(mpg[hp > 150]))
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For example, to find the location o
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Your results should look similar to
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RGui and RStudio allow you to set t
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Reading the Package Manual and Vign
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Because the authors of R packages w
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AppendixInstalling R and RStudioBef
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a number of startup options by adap
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If you click Browse, you can select
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To access the cheat sheet specifica
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