10.2003 ICGEB, New Delhi, India (<strong>Dr</strong>. Dinesh Gupta) 07.2002 Computational Biology for Pathogen Investigation, MBL, Kampala, Uganda (<strong>Dr</strong>s. David S. Roos and Thomas Egwang) 01.2002- Teaching Assistant, Biol536 ‘Computational Biology’, University <strong>of</strong> Pennsylvania, 05.2002 Philadelphia, PA, USA (<strong>Dr</strong>. J. Kissinger) 06.2001 Teaching Assistant <strong>of</strong> the section 'Computational Biology' within the course 'Biology <strong>of</strong> Parasitism', Woods Hole, MA, USA 03.2001 Lecture 'Computational genefinding' within Biol536: 'Computational Biology', University 04.1999 & 04.2000 <strong>of</strong> Pennsylvania, Philadelphia, PA, USA (<strong>Dr</strong>. J. Kissinger) Teaching assistant 'Molecular Biology Methods', Philipps University, Marburg (Pr<strong>of</strong>. <strong>Dr</strong>. Uwe Maier) 2
S<strong>of</strong>tware and Datenbases Book chapters Publications • AureusDB – a Staphylococcus aureus Genome Database, http://aureusdb.biologie.uni-greifswald.de • ZIK-ImageJ, Macro-Extensions to easily analyze microscopy imaging formats with ImageJ http://www.zik-fg.de/Group_Bioinformatics_Toponomics/data.html (superseded bei WueFiji, soon available for download) • ToxoDB & PlasmoDB: Toxoplasma gondii and Plasmodium genome resources (developer until 12/2004); http:// ToxoDB.org http://PlasmoDB.org • Matthias Scholz, <strong>Martin</strong> <strong>Fraunholz</strong>, and Joachim Selbig. Nonlinear principal component analysis: neural network models and applications. In Principal Manifolds for Data Visualization and Dimension Reduction, edited by Alexander N. Gorban, Balázs Kégl, Donald C. Wunsch, and Andrei Zinovyev. Volume 58 <strong>of</strong> LNCSE, pages 44-67. Springer Berlin Heidelberg, 2007. • Crawford, M.J., <strong>Fraunholz</strong>, M.J., Roos, D.S. (2003). Energy metabolism in the Apicomplexa. In: Molecular Medical Parasitology. Joseph Marr, Nilsen, T., Komuniecki, R. (eds.) Academic Press. p. 154-169. • Wastl, J., <strong>Fraunholz</strong>, M., Zauner, S., Maier, U.-G. (1999) Lessons from nucleomorphs and chloroplasts. In: From symbiosis to eukaryotism - ENDOCYTOBIOLOGY VII. Wagner E, Normann J, Greppin H, Hackstein JHP, Herrmann RG, Kowallik KV, Schenk HEA, Seckbach J., eds., pp.319-326, Geneva University Press • <strong>Fraunholz</strong>, M. J., Wastl, J., Zauner, S., Rensing, S. A., Scherzinger, M.M., Maier, U.-G. (1997). The evolution <strong>of</strong> cryptophytes. Plant Syst. Evol. [Suppl.] 11:163- 174. In Bhattacharya, D. 1997. Origins <strong>of</strong> algae and their plastids. (Editor) Springer-Verlag, Wien Dissertation • 'Das Nucleomorph Chromosom II der Cryptomonade Guillardia theta: Struktur, Sequenzanalyse und evolutionäre Implikationen' (1999), Philipps-Universität, Marburg Articles • Giese, B., F. Glowinski, K. Paprotka, S. Dittmann, T. Steiner, B. Sinha, and M. J. <strong>Fraunholz</strong>. 2011. Expression <strong>of</strong> delta-toxin by Staphylococcus aureus mediates escape from phago-endosomes <strong>of</strong> human epithelial and endothelial cells in the presence <strong>of</strong> beta-toxin. Cell Microbiol 13:316-329. • Ziegler, P., S. Teller, N. H. Ha, B. Giese, M. <strong>Fraunholz</strong>, and R. Walther. 2011. Phosphoproteomic identification <strong>of</strong> a PDX-1/14-3-3epsilon interaction in pancreatic beta cells. Horm Metab Res 43:165-170. • Köck, K., A. Koenen, B. Giese, M. <strong>Fraunholz</strong>, K. May, W. Siegmund, E. Hammer, U. Volker, G. Jedlitschky, H. K. Kroemer, and M. Grube. 2010. Rapid modulation <strong>of</strong> the organic anion transporting polypeptide 2B1 (OATP2B1, SLCO2B1) function by protein kinase C-mediated internalization. J Biol Chem. • Stoll, S., H. Feldhaar, M. J. <strong>Fraunholz</strong>, and R. Gross. 2010. Bacteriocyte dynamics during development <strong>of</strong> a holometabolous insect, the carpenter ant Camponotus floridanus. BMC Microbiol 10:308. • Lam, T. T., B. Giese, D. Chikkaballi, A. Kuhn, W. Wolber, J. Pane-Farre, D. Schafer, S. Engelmann, M. <strong>Fraunholz</strong>, and B. Sinha. 2010. Phagolysosomal integrity is generally maintained after Staphylococcus aureus invasion <strong>of</strong> nonpr<strong>of</strong>essional phagocytes but is modulated by strain 6850. Infect Immun 78:3392-3403. • Paprotka, K., B. Giese, and M. J. <strong>Fraunholz</strong>. 2010. Codon-improved fluorescent proteins in investigation <strong>of</strong> Staphylococcus aureus host pathogen interactions. J Microbiol Methods 83:82-86. • Rändler, C., R. Matthes, A. J. McBain, B. Giese, M. <strong>Fraunholz</strong>, R. Sietmann, T. Kohlmann, N. O. Hübner, and A. Kramer. 2010. A three-phase in-vitro system for 3
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