Curriculum Vitae : Daniel Commenges, Publications 2000 ... - Isped

Curriculum Vitae : Daniel Commenges,Date of birth : 8 June 1948 in Bordeaux, France.Qualifications:Engineer degree of Ecole Nationale des Ponts et Chaussées, Paris, 1972.PhD in Applied Mathematics, University of Bordeaux 1, 1980.Habilitation to direct researches, University of Bordeaux 2, 1988.Positions:Engineer from 1975 to 1983, Informatics Department, University of Bordeaux 2,INSERM researcher from 1984 up to now.Nominated Research Director in 1993 and first class Research Director in 2002.Director of the INSERM Biostatistics Unit EMI 338 in 2003, relabelled U 875 in 2007, andfrom January 2008 Biostatistics Team of the Epidemiology and Biostatistics Research Center(INSERM U897).Editorial activities:Associate Editor for Biometrics from 1993 to 2000, Editor of Biometrics form 2000 to 2003 ;currently Associate Editor of Lifetime Data Analysis, International Journal of Biostatistics andStatistics Surveys. Journal de la SFdS.PhD supervision and examining experience:11 PhD supervised and member of more than 50 juries of PhD thesis.Main research interest:Statistical models in epidemiology and biology, application of stochatic processes, statisticalinference in dynamical models. causal interpretation, model selection.See personal pagePublications 2000-2010.1. Rondeau V, Commenges D , Jacqmin-Gadda H and Dartigues JF (2000).Relationship between aluminium and silica concentrations in drinking water andAlzheimer's disease: an 8-year follow-up study. Am J Epidemiol , 152, 59-66.2. Jacqmin-Gadda H, Thiebaut R, Chene G, Commenges D (2000). Analysis of leftcensoredlongitudinal data with application to viral load in HIV infection. Biostatistics , 1,355-368.3. Commenges, D and Rondeau, V (2000). Standardized martingale residuals appliedto grouped left-truncated observations of dementia cases. Lifetime Data Analysis , 6,229--235.4. Jacqmin-Gadda H, Fabrigoule C, Commenges D , Letenneur, L and Dartigues, J-F.(2000). A cognitive screening battery for dementia in the elderly. J Clin Epidemiol , 53,980-9875. Commenges D, Scotet V, Renaud S, Jacqmin-Gadda H, Barberger-Gateau P and

23. D. Commenges.(2003) Likelihood for interval-censored observations from multi-statemodels. Research Report 02/5, Department of Biostatistics, University of Copenhagen,Denmark: http://www.pubhealth.ku.dk/bsa/publ-e.htm, and SORT, 27, 1-12.24. D. Commenges, P. Joly, L. Letenneur and J-F Dartigues, 2004, Incidence andmortality of Alzheimer's disease or dementia using an illness-death model, Statistics inMedicine, 23 (2), 199-210.25. D. Commenges, P. Joly, 2004, Multi-state model for dementia, institutionalization anddeath, Communications in Statistics A, 33, 1315-1326.26. B Liquet and D Commenges.(2004) Estimating the expectation of the loglikelihoodwith censored data for estimator selection. Lifetime Data Analysis, 10, 351-367.27. Thiébaut R, Jacqmin-Gadda H, Babiker A, Commenges D and the CASCADEcollaboration (2005). Joint modelling of bivariate longitudinal data with informativedropout and left censoring with application to the evolution of CD4+ cell count and HIVRNA viral load in response to treatment of HIV infection, Stat Med , 24(1) , 65-82.28. Alioum A, Commenges D, Thiébaut R, Dabis F ; Groupe d’Epidémiologie Clinique duSIDA en Aquitaine. A multi-state approach for estimating HIV incidence using data from aprevalent cohort study. Appl Statist. 2005 ;54(4) :739-52.29. B Liquet and D Commenges.(2005) Semi-parametric estimator selection based on theexpectation of the log-likelihood. in Volume in Honnour of Marvin Zelen, Kluwer, in press.30. B Liquet and D Commenges.(2005) Computation of the p-value of the maximum ofscore tests in the generalized linear model: application to multiple coding. Stat ProbLetters, 71, 33-38.31. JC Desenclos, D Costagliola, D Commenges, J Lelllouch et AC23. (2005) Laprevalence de la seropositivite VIH en France. BEH, 11/2005, 41-44.32. Hsu C-H, Taylor JMG, Murray S and Commenges D. (2006) Survival analysis usingauxiliary variables via nonparametric multiple imputation. Stat Med, 25, 3503-3517.33. H Jacqmin-Gadda, D. Commenges and JF Dartigues. (2006) Random changepointmodel for joint modeling of cognitive decline and dementia, Biometrics, 62, 254-260.34. Proust, C., Jacqmin-Gadda, H., Taylor, JMG, Ganiayre, J. and Commenges, D.(2006). A non-linear model with latent process for cognitive evolution using multivariatelongitudinal data. Biometrics, 62, 1014-1024.35. Commenges, D. and Rondeau, V. (2006). Relationship between derivatives of theobserved and full loglikelihoods and application to Newton-Raphson algorithm. TheInternational Journal of Biostatistics: Vol. 2: No. 1, Article 4.http://www.bepress.com/ijb/vol2/iss1/4.36. Rodolphe Thiebaut , Jeremie Guedj , Helene Jacqmin-Gadda , Genevieve Chene ,Pascale Trimoulet , Didier Neau and Daniel Commenges (2006). Estimation ofdynamical model parameters taking into account undetectable marker values. BMCMedical Research Methodology 2006, 6:38.37. Rondeau V, Iron A, Letenneur L, Commenges D, Duchene F , Arveiler B andDartigues J-F. (2006). Analysis of the effect of aluminum in drinking water and transferinC2 allele on Alzheimer's disease. Eur J Neurology 13, 1022-1025.38. Lazaro E, Coureau G, Guedj J, Blanco P, Pellegrin I, Commenges D, Dabis F,Moreau JF, Pellegrin JL, Thiébaut R and the ANRS Co3 Aquitaine Cohort. Change in Tlymphocytes count after HAART initiation in HIV-infected patients with history ofMycobacterium avium complex infection. Antiviral Therapy, 2006, 11:343-50.

39. Thiébaut R, Guedj J, Jacqmin-Gadda H, Chêne G, Trimoulet P, Neau D, CommengesD. Estimation of dynamical model parameters taking into account undetectable markervalues. BMC Medical Research Methodology 2006, 6:38 (1Aug2006) Duvignac J,Thiébaut R. CD4 natural history and informative censoring in sub-saharan Africa. Journalof Acquired Immune Deficiency Syndrome, 2006, 43:380-381.40. Commenges, D. and Gégout-Petit, A. (2007). Likelihood for generally coarsenedobservations from multi-state or counting process models. Scandinavian Journal ofStatistics, in press.41. Daniel Commenges, Pierre Joly, Anne Gégout-Petit, Benoit Liquet (2007). Choicebetween semi-parametric estimators of Markov and non-Markov multi-state models fromgenerally coarsened observations. Scandinavian Journal of Statistics, 34, 33-52.42. Hsu, C-H; Taylor, J., Murray, S and Commenges, D (2007). Multiple Imputation ForInterval Censored Data With Auxiliary Variables. Stat Med, 26, in press.43. Guedj, J., Thiébaut, R. and Commenges, D. (2007). Maximum likelihood estimation indynamical models of HIV. Biometrics, 63, 1198-1206.44. Guedj, J., Thiébaut, R. and Commmenges, D. (2007). Practical identifiability of HIVdynamics models. Bulletin of Mathematical Biology, 69, 2493-2513.45. Ganiayre, J., Commenges, D. and Letenneur, L. (2007). A Latent Process Model for Dementiaand Psychometric Tests. Lifetime Data Analysis, 14, 115-133.46. Liquet, Sarracco and Commenges. Selection between proportional and stratifiedhazards models based on expected log-likelihood. Computational Statistics, 22,619-634.(2007)47. Commenges, D. and Liquet, B. (2008). Asymptotic distribution of score statistics forspatial cluster detection with censored data, Biometrics, 64, 1287-1292.48. D. Commenges, A. Sayyareh, L. Letenneur, J. Guedj and A. Bar-Hen (2008)49. Estimating a difference of Kullback-Leibler risks using a normalized difference of AIC.Annals of Applied Statistics, 2, 1123-1142.50. Linda Wittkop, Daniel Commenges, Isabelle Pellegrin, Dominique Breilh, Didier Neau,Denis Lacoste, Jean-Luc Pellegrin, Geneviève Chêne, François Dabis, RodolpheThiébaut (2008). Alternative methods to analyse the impact of HIV mutations onvirological response to antiviral therapy. BMC Medical Research Methodology 2008,8:68.51. Corbière, F, Joly, P. and Commenges, D. (2009). A penalized likelihood approach formixture cure models. Stat Med, 28, 510-524.52. Rondeau Virginie, Jacqmin-Gadda Hélène, Commenges Daniel, Helmer Catherine,Jean-François Dartigues. (2009) Aluminum and silica intake in drinking water and the riskof Alzheimer's disease or cognitive decline: findings of the 15-year follow-up PAQUIDcohort. American Journal of Epidemiology, 169, 489-496.53. Commenges, D. and Gégout-Petit, A. (2009). A general dynamical model with causalinterpretation. JRSS-B, 71, part 4, 1-18.54. Jacqmin-Gadda, H., Proust, C, Taylor, J, Commenges, D. (2009). Score test forconditional independence between longitudinal outcome and time-to-event given theclasses in the joint latent class model. Biometrics, in press.55. 09-5 Sommmen, C, Alioum, A and Commenges, D. (2009) A multistate approach forestimating the incidence of human immunodeficiency virus by using HIV and AIDS

French surveillance data", Stat Med, in press.56. Commenges,D. (2009) Statistical models, conventional, penalized and hierarchicallikelihood. Statistics Surveys, 3, 1-17.57. Joly, P and Commenges D. Estimating life expectancy of demented andinstitutionalized subjects from interval-censored observations of a Multi-state model.Statistical Modelling, in press.58. Gégout-Petit, A. and Commenges, D. (2010) A general definition of influence betweenstochastic processes. LIDA, 16, 33-4459. Drylewicz, J., Commenges, D. and Thiébaut (2010) Score tests for exploring complexmodels: application to HIV dynamics model, Biometrical Journal, 52, 10-21.60. Liquet, B and Commenges, D. (2010) Choice of estimators based on differentobservations: modified AIC and LCV criteria. Scandinavian Journal of Statistics, in press.61. Guedj, J, Thiebaut, R and Commenges, D. (2010) Joint modeling of the clinicalprogression and of the biomarkers dynamics using a machanistic model. Biometrics, inpress.62. Drylewicz, J., Guedj, J., Commenges, D. and Thiébaut (2010) Modeling the dynamicsof biomarkers during primary infection taking into account the uncertainty of infectiondate. AOAS, in press.63. Commenges D, Jolly, D, Putter, H and Thiébaut, R. (2010) Inference in HIV dynamicsmodels via hierarchical likelihood CSDA, in press.64. Sommmen, C., Commenges, D. Le Vu, S., Meyer, L. and Alioum, A. (2010),Estimation of infection times using longitudinal serological markers of HIV: implication forthe eestimation of HIV incidence. Biometrics, in press.65. Commenges, D. (2010) Extending The Range of Application of Permutation Tests: theExpected Permutation p-value Approach. ArXiv1003.1002[mathST].