<strong>CHEM</strong> <strong>165</strong>,<strong>265</strong>/<strong>BIMM</strong> <strong>162</strong>/<strong>BGGN</strong> <strong>262</strong><strong>REFERENCE</strong> <strong>LISTS</strong>IMAGE PROCESSING AND 3D RECONSTRUCTION (Cont'd)E. 3D Reconstruction from Electron Micrographs (Cont'd)"Two-Dimensional" Crystals (Cont’d)Heymann, J. B., P. Agre and A. Engel (1998) Progress on the structure and function of aquaporin 1. J. Struct.Biol. 121:191-206.Mayanagi, K., T. Ishikawa, C. Toyoshima, Y. Inoue and K. Nakazato (1998) Three-dimensional electronmicroscopy of the photosystem II core complex. J. Struct. Biol. 123:211-224.“Three-Dimensional" CrystalsCrowther, R. A. and Luther, P. K. (1984) Three-dimensional reconstruction from a single oblique section offish muscle M-band. Nature (London) 307:569-570.Luther, P. K. and Crowther, R. (1984) Three-dimensional reconstruction from tilted sections of fish muscle M-band. Nature (London) 307:566-568.Baker, T. S. and D. A. Winkelmann (1986) Methodology for determining the three-dimensional crystalstructure of myosin S1 from electron microscopy of orthogonal thin-sections. Proc. Elec. Microsc. Soc.Amer. (Albuquerque) 44:26-29.•Winkelmann, D. A., T. S. Baker and I. Rayment (1991) Three-dimensional structure of myosin subfragment 1from electron microscopy of sectioned crystals. J. Cell Biol. 114:701-713.Taylor, K. A. and R. A. Crowther (1991) A protocol for 3D image reconstruction from a single image of anoblique section. Ultramicrosc 38:85-103.Taylor, K. A. and R. A. Crowther (1992) 3D reconstruction from the Fourier transform of a single superlatticeimage of an oblique section. Ultramicrosc 41:153-167.•Taylor, K. A. and H. Winkler (1995) 3-D reconstruction of paracrystalline biological specimens bytomography. JMSA Proceedings Microscopy and Microanalysis 53:734-735.Winkler, H. and K. A. Taylor (1996) Software for 3-D reconstruction of images of oblique sections through 3-Dcrystals. J. Struct. Biol. 116:241-247.34
<strong>CHEM</strong> <strong>165</strong>,<strong>265</strong>/<strong>BIMM</strong> <strong>162</strong>/<strong>BGGN</strong> <strong>262</strong><strong>REFERENCE</strong> <strong>LISTS</strong>IMAGE PROCESSING AND 3D RECONSTRUCTION (Cont'd)E. 3D Reconstruction from Electron Micrographs (Cont'd)Helical Structures – Methods / Technical•DeRosier, D. J. and A. Klug (1968) Reconstruction of three dimensional structures from electronmicrographs. Nature 217:130-134. First 3D reconstruction of a negatively stained biologicalmacromolecule.•DeRosier, D. J. and P. B. Moore (1970) Reconstruction of three-dimensional images from electronmicrographs of structures with helical symmetry. J. Mol. Biol. 52:355-369. Detailed account of methodsdeveloped to produce first 3D reconstruction of a helical particle.Egelman, E. H. (1986) An algorithm for straightening images of curved filamentous structures. Ultramicrosc.19:367-374.•Moody, M. F. (1990) Image Analysis of Electron Micrographs. In Biophysical Electron Microscopy: BasicConcepts and Modern Techniques (P. W. Hawkes and U. Valdre, eds.) Academic Press, New York pp.170-197, 208-222 (TSB).Morgan, D. G. and D. DeRosier (1992) Processing images of helical structures:Ultramicroscopy 46:263-285.A new twist.Carragher, B., M. Whittaker and R. A. Milligan (1996) Helical processing using PHOELIX. J. Struct. Biol.116:107-112.Owen, C. H., D. G. Morgan and D. J. DeRosier (1996) Image analysis of helical objects: the Brandeis helicalpackage. J. Struct. Biol. 116:167-175.Metoz, F. and R. H. Wade (1997) Diffraction by helical structures with seams: microtubules. J. Struct. Biol.118:128-139.•Egelman, E. H. (2000) A robust algorithm for the reconstruction of helical filaments using single-particlemethods. Ultramicrosc. 85:225-234.Toyoshima, C. (2000) Structure determination of tubular crystals of membrane proteins. I. Indexing ofdiffraction patterns. Ultramicrosc. 84:1-14.Yonekura, K. and C. Toyoshima (2000) Structure determination of tubular crystals of membrane proteins. II.Averaging of tubular crystals of different helical classes. Ultramicrosc. 84:15-28.Yonekura, K. and C. Toyoshima (2000) Structure determination of tubular crystals of membrane proteins. III.Solvent flattening. Ultramicrosc. 84:29-45.Helical Structures – Methods / Technical [Historical Interest]Amos, L. A. and A. Klug (1975) Three-dimensional image reconstructions of the contractile tail of T4bacteriophage. (Appendix: Combination of data from helical particles: Correlation and selection. By L. A.Amos). J. Mol. Biol. 99:51-73.Smith, P. R., U. Aebi, R. Josephs and M. Kessel (1976) Studies of the structure of the T4 bacteriophage tailsheath. I. <strong>The</strong> recovery of three-dimensional structural information from the extended sheath. (Appendix:<strong>The</strong> determination of the helical screw angle of a helical particle from its diffraction pattern). J. Mol. Biol.106:243-275.Misell, D. L. (1978) Image analysis, enhancement and interpretation. Pract. Meth. Elec. Microsc. (A. M.Glauert, ed.) 4:95-106,119-122,282-286. (TSB).Stewart, M. (1988) Computer image processing of electron micrographs of biological structures with helicalsymmetry. J. Elec. Microsc. Tech. 9:325-358. Basic review of technique.Helical Structures – 3D Reconstruction ResultsFinch, J. T. and A. Klug (1971) Three-dimensional reconstruction of the stacked-disk aggregate of tobaccomosaic virus protein from electron micrographs. Phil. Trans. R. Soc. Lond. 261:211-219.Unwin, P. N. T. and A. Klug (1974) Electron microscopy of the stacked disc aggregate of tobacco mosaicvirus protein. I. Three-dimensional image reconstruction. J. Mol. Biol. 87:641-656.35
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