sildes - salsahpc

More documents

Recommendations

Info

Clustering 10 million UniRef1006UniRef100: 10M proteins including 5.3M bacterial &archaealBLAST - common sequence alignment approachAll vs. All alignment on Azure 475 eight-core virtual machines produced 3+billion filtered records in 6 daysVisualizing PSUECMLS 2012
Clustering 10 million UniRef1007Use prokaryotic COG as a starting point.Expand COGs ~20 fold (3.5 million proteins).Cluster 2M proteins into 500K functional groups Single linkage clustering with MapReduceframework on HadoopVisualizing PSUECMLS 2012
Page 1 and 2: VISUALIZING THE PROTEINSEQUENCE UNI
Page 3 and 4: Grand Challenge of Functional Genom
Page 5: COG: Clusters of Orthologous Groups
Page 9 and 10: Public Resources9 Struggle to cope
Page 11 and 12: Multi-Dimensional Scaling (MDS)11Sa
Page 13 and 14: MDS Details13 f chosen heuristicall
Page 15 and 16: 3D View of 100K COG Sequences15Visu
Page 17 and 18: Cluster Annotation17COG Annotation
Page 19 and 20: Dendrogram of Cluster Centroids19Vi
Page 21 and 22: Heatmap for Selected Clusters21Visu
Page 23 and 24: Blast 623Visualizing PSUECMLS 2012
Page 25 and 26: 25ClusterDataBlast 6Originalrun has
Page 27 and 28: OctTree for 100Ksample of Fungi27We
Page 29 and 30: Conclusions29Data → Knowledge: pr
Page 31 and 32: References and Resources31COG data
Page 33: 25Thank you for your attentionVisua

sildes - salsahpc

Create successful ePaper yourself

Delete template?

Save as template?