A rare drug-resistant strain of Klebsiella pneumoniae in Houston, Texas, was found
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A <strong>rare</strong> <strong>drug</strong>-<strong>resistant</strong> <strong>stra<strong>in</strong></strong> <strong>of</strong> <strong>Klebsiella</strong> <strong>pneumoniae</strong> <strong>in</strong> <strong>Houston</strong>,<br />
<strong>Texas</strong>, <strong>was</strong> <strong>found</strong><br />
Recently, the deadly "superbug" <strong>Klebsiella</strong> <strong>pneumoniae</strong> is out <strong>of</strong> trouble?<br />
The <strong>Houston</strong> Methodist Institute led the genetic test<strong>in</strong>g <strong>of</strong> 2000 <strong>Klebsiella</strong><br />
<strong>pneumoniae</strong> <strong>stra<strong>in</strong></strong>s <strong>in</strong> local hospital patients. <strong>Klebsiella</strong> <strong>pneumoniae</strong> is the most<br />
important type <strong>of</strong> bacteria <strong>in</strong> the genus Enterobacter, which causes more than 95% <strong>of</strong><br />
<strong>Klebsiella</strong> <strong>in</strong>fections.<br />
<strong>Klebsiella</strong> <strong>pneumoniae</strong> is one <strong>of</strong> the ma<strong>in</strong> pathogens <strong>of</strong> cl<strong>in</strong>ical isolation and<br />
nosocomial <strong>in</strong>fection. At the same time, <strong>Klebsiella</strong>, Pseudomonas aerug<strong>in</strong>osa and<br />
Serratia were all important pathogens <strong>in</strong> nosocomial septicemia, and the fatality rate<br />
<strong>was</strong> higher than that <strong>of</strong> <strong>Klebsiella</strong> aerug<strong>in</strong>osa and Serratia.<br />
As reported <strong>in</strong> mBio, researchers have <strong>found</strong> that a <strong>rare</strong> clone group is more<br />
susceptible to <strong>in</strong>fection than a <strong>stra<strong>in</strong></strong> <strong>in</strong> nature, like a highly toxic <strong>stra<strong>in</strong></strong>.<br />
James Musser, a lead<strong>in</strong>g author <strong>of</strong> <strong>Houston</strong> Methodist Hospital, said <strong>in</strong> a<br />
statement: "it is very surpris<strong>in</strong>g to f<strong>in</strong>d a <strong>rare</strong> <strong>stra<strong>in</strong></strong> <strong>in</strong> our city. <strong>Klebsiella</strong> <strong>pneumoniae</strong><br />
is a common and important cause <strong>of</strong> human <strong>in</strong>fection. We urgently need to identify<br />
potential vacc<strong>in</strong>e targets or other new treatments, and to develop new, rapid<br />
diagnostic techniques. "<br />
Chlamydia <strong>pneumoniae</strong> lives <strong>in</strong> the human gut and does not cause any trouble.<br />
However, bacteria can cause severe <strong>in</strong>fections <strong>in</strong> other parts <strong>of</strong> the body and outside<br />
the body. Inpatients are at particularly high risk for severe bacterial <strong>in</strong>fections, the<br />
researchers expla<strong>in</strong>ed.<br />
The bacteria can cause harmful <strong>in</strong>fections, such as pneumonia, blood flu and<br />
men<strong>in</strong>gitis, once it moves out <strong>of</strong> the <strong>in</strong>test<strong>in</strong>e and <strong>in</strong>to other body parts.<br />
This is not the first time this year for Mycoplasma <strong>pneumoniae</strong> to be released <strong>in</strong><br />
the United States. Earlier this year, an elderly Nevada woman died <strong>of</strong> the bacteria.<br />
The researchers say it resists all 26 antibiotics used <strong>in</strong> the United States.<br />
The researchers <strong>found</strong> super endurance's f<strong>in</strong>al antibiotic height: PlayVideoCBS.<br />
Musser and his colleagues exam<strong>in</strong>ed the bacterial genome <strong>of</strong> 1777 <strong>Klebsiella</strong><br />
<strong>pneumoniae</strong> <strong>stra<strong>in</strong></strong>s from extended beta-lactamase (ESBL) collected from the <strong>Houston</strong><br />
Methodist Hospital patient system between 2011 and 2015. They developed<br />
evolutionary trees <strong>of</strong> <strong>Klebsiella</strong> <strong>pneumoniae</strong> produc<strong>in</strong>g ESBL.<br />
In other countries or places, a large number <strong>of</strong> hospitals carried out a study <strong>of</strong><br />
<strong>Klebsiella</strong> <strong>pneumoniae</strong> and <strong>found</strong> that CG258 had a lead<strong>in</strong>g role <strong>in</strong> the tree. The<br />
<strong>Houston</strong> researchers mentioned <strong>in</strong> the report that CG258 accounted for only 1/4 <strong>of</strong> the<br />
number <strong>of</strong> samples. On the contrary, they <strong>found</strong> that more than 1/3 <strong>of</strong> the <strong>stra<strong>in</strong></strong> <strong>in</strong> the
sample belonged to the CG307 evolution branch and the rema<strong>in</strong><strong>in</strong>g <strong>stra<strong>in</strong></strong>s were<br />
heterogeneous.<br />
Researchers pay that none <strong>of</strong> the hospitals <strong>in</strong> the system are <strong>in</strong>fected with CG307<br />
or CG258. However, throughout the study, it can be <strong>found</strong> that CG307 and CG258 are<br />
common <strong>in</strong> the population. However, it is not clear why CG307 is so common <strong>in</strong><br />
<strong>Houston</strong>.<br />
The researchers further carried out the CG307&CG258 mice experiment. Mice<br />
<strong>in</strong>fected with CG307/CG258 showed no difference <strong>in</strong> bacterial load between the two<br />
groups. Although CG307 branches lead to low levels <strong>of</strong> IL-17, both bacteria trigger<br />
an immune response <strong>in</strong> mice. However, this and other cl<strong>in</strong>ical trials have shown that<br />
CG207 is as toxic as CG208.<br />
Musser and his colleagues used Pacific Biosciences's long-read<strong>in</strong>g sequenc<strong>in</strong>g<br />
platform for bacterial RNA sequenc<strong>in</strong>g on five <strong>stra<strong>in</strong></strong>s from their samples. They<br />
reported that the <strong>stra<strong>in</strong></strong>s conta<strong>in</strong>ed 5 plasmids, usually conta<strong>in</strong><strong>in</strong>g antibiotic resistance<br />
genes.<br />
In particular, the researchers <strong>found</strong> that <strong>in</strong> the cohort, 64.6% <strong>of</strong> CG258 <strong>stra<strong>in</strong></strong>s<br />
and 34.3% <strong>of</strong> CG307 <strong>stra<strong>in</strong></strong>s were CGPC alleles (which give carbapenase resistance).<br />
In some <strong>stra<strong>in</strong></strong>s, they also revealed the gene encod<strong>in</strong>g metallo-β-lactamase 1 (NDM-1)<br />
<strong>in</strong> New Delhi. And the plasmid can be easily transferred.<br />
The RNA sequenc<strong>in</strong>g <strong>of</strong> the patient subgroup further revealed that the <strong>stra<strong>in</strong></strong>s<br />
carry<strong>in</strong>g KPC,NDM-1,OXA-48 and Yers<strong>in</strong>ia resistance genes did express them.<br />
Us<strong>in</strong>g a mach<strong>in</strong>e-learn<strong>in</strong>g approach, Musser and his colleagues developed a<br />
classifier that uses bacterial genome-wide sequences to predict antibiotic resistance.<br />
They report that the results <strong>of</strong> their AdaBoost-based algorithms are closely related to<br />
cl<strong>in</strong>ical phenotypes.<br />
Wesley Long, lead author <strong>of</strong> <strong>Houston</strong> Methodist Hospital, said: "the comb<strong>in</strong>ation<br />
<strong>of</strong> complex and novel comput<strong>in</strong>g and molecular strategies allows us to quickly<br />
identify <strong>drug</strong>-<strong>resistant</strong> <strong>stra<strong>in</strong></strong>s. "We can identify antibiotics that are sensitive to this<br />
<strong>stra<strong>in</strong></strong> more quickly, and the faster the therapists can treat these patients, the more<br />
quickly it is possible for them to be properly treated.