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A rare drug-resistant strain of Klebsiella pneumoniae in Houston, Texas, was found

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A <strong>rare</strong> <strong>drug</strong>-<strong>resistant</strong> <strong>stra<strong>in</strong></strong> <strong>of</strong> <strong>Klebsiella</strong> <strong>pneumoniae</strong> <strong>in</strong> <strong>Houston</strong>,<br />

<strong>Texas</strong>, <strong>was</strong> <strong>found</strong><br />

Recently, the deadly "superbug" <strong>Klebsiella</strong> <strong>pneumoniae</strong> is out <strong>of</strong> trouble?<br />

The <strong>Houston</strong> Methodist Institute led the genetic test<strong>in</strong>g <strong>of</strong> 2000 <strong>Klebsiella</strong><br />

<strong>pneumoniae</strong> <strong>stra<strong>in</strong></strong>s <strong>in</strong> local hospital patients. <strong>Klebsiella</strong> <strong>pneumoniae</strong> is the most<br />

important type <strong>of</strong> bacteria <strong>in</strong> the genus Enterobacter, which causes more than 95% <strong>of</strong><br />

<strong>Klebsiella</strong> <strong>in</strong>fections.<br />

<strong>Klebsiella</strong> <strong>pneumoniae</strong> is one <strong>of</strong> the ma<strong>in</strong> pathogens <strong>of</strong> cl<strong>in</strong>ical isolation and<br />

nosocomial <strong>in</strong>fection. At the same time, <strong>Klebsiella</strong>, Pseudomonas aerug<strong>in</strong>osa and<br />

Serratia were all important pathogens <strong>in</strong> nosocomial septicemia, and the fatality rate<br />

<strong>was</strong> higher than that <strong>of</strong> <strong>Klebsiella</strong> aerug<strong>in</strong>osa and Serratia.<br />

As reported <strong>in</strong> mBio, researchers have <strong>found</strong> that a <strong>rare</strong> clone group is more<br />

susceptible to <strong>in</strong>fection than a <strong>stra<strong>in</strong></strong> <strong>in</strong> nature, like a highly toxic <strong>stra<strong>in</strong></strong>.<br />

James Musser, a lead<strong>in</strong>g author <strong>of</strong> <strong>Houston</strong> Methodist Hospital, said <strong>in</strong> a<br />

statement: "it is very surpris<strong>in</strong>g to f<strong>in</strong>d a <strong>rare</strong> <strong>stra<strong>in</strong></strong> <strong>in</strong> our city. <strong>Klebsiella</strong> <strong>pneumoniae</strong><br />

is a common and important cause <strong>of</strong> human <strong>in</strong>fection. We urgently need to identify<br />

potential vacc<strong>in</strong>e targets or other new treatments, and to develop new, rapid<br />

diagnostic techniques. "<br />

Chlamydia <strong>pneumoniae</strong> lives <strong>in</strong> the human gut and does not cause any trouble.<br />

However, bacteria can cause severe <strong>in</strong>fections <strong>in</strong> other parts <strong>of</strong> the body and outside<br />

the body. Inpatients are at particularly high risk for severe bacterial <strong>in</strong>fections, the<br />

researchers expla<strong>in</strong>ed.<br />

The bacteria can cause harmful <strong>in</strong>fections, such as pneumonia, blood flu and<br />

men<strong>in</strong>gitis, once it moves out <strong>of</strong> the <strong>in</strong>test<strong>in</strong>e and <strong>in</strong>to other body parts.<br />

This is not the first time this year for Mycoplasma <strong>pneumoniae</strong> to be released <strong>in</strong><br />

the United States. Earlier this year, an elderly Nevada woman died <strong>of</strong> the bacteria.<br />

The researchers say it resists all 26 antibiotics used <strong>in</strong> the United States.<br />

The researchers <strong>found</strong> super endurance's f<strong>in</strong>al antibiotic height: PlayVideoCBS.<br />

Musser and his colleagues exam<strong>in</strong>ed the bacterial genome <strong>of</strong> 1777 <strong>Klebsiella</strong><br />

<strong>pneumoniae</strong> <strong>stra<strong>in</strong></strong>s from extended beta-lactamase (ESBL) collected from the <strong>Houston</strong><br />

Methodist Hospital patient system between 2011 and 2015. They developed<br />

evolutionary trees <strong>of</strong> <strong>Klebsiella</strong> <strong>pneumoniae</strong> produc<strong>in</strong>g ESBL.<br />

In other countries or places, a large number <strong>of</strong> hospitals carried out a study <strong>of</strong><br />

<strong>Klebsiella</strong> <strong>pneumoniae</strong> and <strong>found</strong> that CG258 had a lead<strong>in</strong>g role <strong>in</strong> the tree. The<br />

<strong>Houston</strong> researchers mentioned <strong>in</strong> the report that CG258 accounted for only 1/4 <strong>of</strong> the<br />

number <strong>of</strong> samples. On the contrary, they <strong>found</strong> that more than 1/3 <strong>of</strong> the <strong>stra<strong>in</strong></strong> <strong>in</strong> the


sample belonged to the CG307 evolution branch and the rema<strong>in</strong><strong>in</strong>g <strong>stra<strong>in</strong></strong>s were<br />

heterogeneous.<br />

Researchers pay that none <strong>of</strong> the hospitals <strong>in</strong> the system are <strong>in</strong>fected with CG307<br />

or CG258. However, throughout the study, it can be <strong>found</strong> that CG307 and CG258 are<br />

common <strong>in</strong> the population. However, it is not clear why CG307 is so common <strong>in</strong><br />

<strong>Houston</strong>.<br />

The researchers further carried out the CG307&CG258 mice experiment. Mice<br />

<strong>in</strong>fected with CG307/CG258 showed no difference <strong>in</strong> bacterial load between the two<br />

groups. Although CG307 branches lead to low levels <strong>of</strong> IL-17, both bacteria trigger<br />

an immune response <strong>in</strong> mice. However, this and other cl<strong>in</strong>ical trials have shown that<br />

CG207 is as toxic as CG208.<br />

Musser and his colleagues used Pacific Biosciences's long-read<strong>in</strong>g sequenc<strong>in</strong>g<br />

platform for bacterial RNA sequenc<strong>in</strong>g on five <strong>stra<strong>in</strong></strong>s from their samples. They<br />

reported that the <strong>stra<strong>in</strong></strong>s conta<strong>in</strong>ed 5 plasmids, usually conta<strong>in</strong><strong>in</strong>g antibiotic resistance<br />

genes.<br />

In particular, the researchers <strong>found</strong> that <strong>in</strong> the cohort, 64.6% <strong>of</strong> CG258 <strong>stra<strong>in</strong></strong>s<br />

and 34.3% <strong>of</strong> CG307 <strong>stra<strong>in</strong></strong>s were CGPC alleles (which give carbapenase resistance).<br />

In some <strong>stra<strong>in</strong></strong>s, they also revealed the gene encod<strong>in</strong>g metallo-β-lactamase 1 (NDM-1)<br />

<strong>in</strong> New Delhi. And the plasmid can be easily transferred.<br />

The RNA sequenc<strong>in</strong>g <strong>of</strong> the patient subgroup further revealed that the <strong>stra<strong>in</strong></strong>s<br />

carry<strong>in</strong>g KPC,NDM-1,OXA-48 and Yers<strong>in</strong>ia resistance genes did express them.<br />

Us<strong>in</strong>g a mach<strong>in</strong>e-learn<strong>in</strong>g approach, Musser and his colleagues developed a<br />

classifier that uses bacterial genome-wide sequences to predict antibiotic resistance.<br />

They report that the results <strong>of</strong> their AdaBoost-based algorithms are closely related to<br />

cl<strong>in</strong>ical phenotypes.<br />

Wesley Long, lead author <strong>of</strong> <strong>Houston</strong> Methodist Hospital, said: "the comb<strong>in</strong>ation<br />

<strong>of</strong> complex and novel comput<strong>in</strong>g and molecular strategies allows us to quickly<br />

identify <strong>drug</strong>-<strong>resistant</strong> <strong>stra<strong>in</strong></strong>s. "We can identify antibiotics that are sensitive to this<br />

<strong>stra<strong>in</strong></strong> more quickly, and the faster the therapists can treat these patients, the more<br />

quickly it is possible for them to be properly treated.

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