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<strong>Comparison</strong> <strong>of</strong> <strong>ELISA</strong> <strong>and</strong> <strong>PCR</strong> <strong>vis</strong>-à-<strong>vis</strong> <strong>cultural</strong> <strong>methods</strong> <strong>for</strong> detecting<br />

Aeromonas spp. in foods <strong>of</strong> animal origin<br />

Abstract<br />

S. Arora a, *, R.K. Agarwal a , B. Bist a,b<br />

a Di<strong>vis</strong>ion <strong>of</strong> Veterinary Public Health, Indian Veterinary Research Institute, Izatnagar, Bareilly (UP)-243 122, India<br />

b Department <strong>of</strong> Veterinary Public Health, College <strong>of</strong> Veterinary Science <strong>and</strong> Animal Husb<strong>and</strong>ry, Mathura (UP)-281 001, India<br />

Received 16 December 2004; received in re<strong>vis</strong>ed <strong>for</strong>m 6 April 2005; accepted 30 June 2005<br />

The present study was conducted to assess the best method <strong>of</strong> the most commonly used <strong>methods</strong> <strong>for</strong> detection <strong>of</strong> aeromonads in foods <strong>of</strong><br />

animal origin. With this objective an OMP based indirect plate <strong>ELISA</strong> <strong>and</strong> a duplex-<strong>PCR</strong> using primers targeting aerolysin gene <strong>and</strong> 16S rRNA<br />

gene <strong>and</strong> yielding amplicons <strong>of</strong> 252 bp <strong>and</strong> 599 bp, respectively, were st<strong>and</strong>ardized. The st<strong>and</strong>ardized protocols <strong>and</strong> the conventional <strong>cultural</strong><br />

method were then compared <strong>for</strong> their respective sensitivities <strong>and</strong> specificities <strong>for</strong> detecting aeromonads from chicken <strong>and</strong> milk samples. Both the<br />

st<strong>and</strong>ardized assays were found to be highly specific <strong>for</strong> Aeromonas. The efficiency <strong>of</strong> the st<strong>and</strong>ardized indirect-<strong>ELISA</strong> <strong>and</strong> duplex-<strong>PCR</strong> protocols<br />

was assessed by artificial inoculation studies with varying concentrations <strong>of</strong> Aeromonas cells inoculated in chicken <strong>and</strong> milk samples followed by<br />

enrichment in Alkaline Peptone Water supplemented with 10 mg/ml cephalothin (APW-C) <strong>for</strong> 12 h. The results revealed that indirect-<strong>ELISA</strong> was<br />

able to detect a minimum <strong>of</strong> 10 3 cells/ml or g <strong>of</strong> Aeromonas cells in spiked milk <strong>and</strong> chicken samples, respectively. Whereas, duplex-<strong>PCR</strong> <strong>and</strong><br />

<strong>cultural</strong> method were able to detect as low as 1 cell/ml or g <strong>of</strong> Aeromonas cells in spiked milk <strong>and</strong> chicken samples. The developed assays were<br />

also tested <strong>for</strong> their efficiency to detect Aeromonas spp. in naturally contaminated milk <strong>and</strong> chicken samples. Out <strong>of</strong> a total 50 milk samples<br />

screened <strong>for</strong> presence <strong>of</strong> Aeromonas by the three <strong>methods</strong> viz., indirect-<strong>ELISA</strong>, duplex-<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong> method only 1 (2%) turned out to be<br />

positive showing positive results by all three <strong>methods</strong>. Similarly, 50 samples <strong>of</strong> chicken were tested by all three <strong>methods</strong>. Three samples (6%)<br />

turned out to be positive <strong>and</strong> here again by all the three <strong>methods</strong>.<br />

D 2005 Published by Elsevier B.V.<br />

Keywords: Aeromonas; <strong>PCR</strong>; <strong>ELISA</strong>; Chicken; Milk<br />

1. Introduction<br />

The culminating quarter <strong>of</strong> the previous century witnessed<br />

the explosion <strong>of</strong> scientific interest in members <strong>of</strong> the genus<br />

Aeromonas as human <strong>and</strong> animal pathogens. Aeromonads<br />

have been implicated as potential food poisoning agents<br />

(Buchanan <strong>and</strong> Palumbo, 1985). Foods <strong>of</strong> animal origin like<br />

fishes <strong>and</strong> other seafoods, meat <strong>and</strong> meat products, eggs,<br />

milk <strong>and</strong> milk products have been reported to be contaminated<br />

by Aeromonas spp. (Bachhil <strong>and</strong> Bhilegaonkar, 1995;<br />

Tsai <strong>and</strong> Chen, 1996; Agarwal et al., 2000; Kumar et al.,<br />

2001; Neyts et al., 2000; Yucel <strong>and</strong> Citak, 2003; Yucel <strong>and</strong><br />

Erdem, 2004).<br />

0168-1605/$ - see front matter D 2005 Published by Elsevier B.V.<br />

doi:10.1016/j.ijfoodmicro.2005.06.019<br />

International Journal <strong>of</strong> Food Microbiology 106 (2006) 177 – 183<br />

* Corresponding author. High Security Animal Disease Laboratory<br />

(HSADL), Kokta Road, An<strong>and</strong> Nagar, Bhopal (MP), 462 021, India. Tel.:<br />

+91 9826570605.<br />

E-mail address: drsarora@rediffmail.com (S. Arora).<br />

www.elsevier.com/locate/ijfoodmicro<br />

Difficulty in recognizing potentially significant Aeromonas<br />

strains in foods poses a dilemma <strong>for</strong> public health authorities<br />

(Kirov, 1993). The conventional microbiological procedures<br />

<strong>for</strong> isolating <strong>and</strong> identifying Aeromonas spp. from foods are<br />

laborious <strong>and</strong> time consuming (ICMSF, 1996; Agarwal <strong>and</strong><br />

Bhilegaonkar, 2003). Some novel approaches like polymerase<br />

chain reaction (<strong>PCR</strong>) (Kingombe et al., 1999; Wang et al.,<br />

2003), outer membrane protein based immunoassays (Sachan<br />

<strong>and</strong> Agarwal, 2002; Ghatak et al., 2003), DNA/RNA probes<br />

(Dorsch et al., 1994; Ludwig et al., 1994) <strong>and</strong> flow cytometry<br />

(Diaper et al., 1992) have been used <strong>for</strong> detection <strong>and</strong>/or<br />

identification <strong>of</strong> Aeromonas spp. from foods or environmental<br />

or clinical samples.<br />

There is a need to develop rapid techniques, <strong>and</strong> to assess<br />

the best technique out <strong>of</strong> them, <strong>for</strong> detection <strong>of</strong> Aeromonas spp.<br />

from food samples <strong>and</strong> to compare their results with the<br />

conventional <strong>cultural</strong> procedures. Thus, the present work was<br />

carried out to st<strong>and</strong>ardize an OMP based indirect plate <strong>ELISA</strong>,


178<br />

a duplex-<strong>PCR</strong> <strong>and</strong> to evaluate the suitability <strong>of</strong> the developed<br />

assays <strong>for</strong> detection <strong>of</strong> Aeromonas from foods <strong>of</strong> animal origin.<br />

The results <strong>of</strong> the developed assays were compared among<br />

themselves <strong>and</strong> with conventional <strong>cultural</strong> method.<br />

2. Materials <strong>and</strong> <strong>methods</strong><br />

2.1. Cultural method<br />

For isolation <strong>and</strong> identification <strong>of</strong> Aeromonas from food<br />

samples 12 h enrichment in Alkaline Peptone Water supplemented<br />

with 10 mg/ml cephalothin (APW-C) was done<br />

(Sachan <strong>and</strong> Agarwal, 2000) <strong>and</strong> growth plated on Ampicillin<br />

Dextrin Agar (ADA). After 24 h incubation at 37 -C the<br />

characteristic colonies were confirmed biochemically (Agarwal<br />

et al., 2003b).<br />

2.2. Indirect plate <strong>ELISA</strong><br />

2.2.1. Preparation <strong>of</strong> crude OMP<br />

The crude outer membrane protein (OMP) was extracted<br />

from the st<strong>and</strong>ard strain <strong>of</strong> Aeromonas hydrophila subsp.<br />

hydrophila (Microbial Type Culture Collection Strain No.<br />

646, MTCC 646) as per the method <strong>of</strong> Crosa <strong>and</strong> Hodges<br />

(1981) as modified by Santos et al. (1996) <strong>and</strong> Sachan <strong>and</strong><br />

Agarwal (2002). Briefly, A. hydrophila subsp. hydrophila<br />

was grown overnight in 100 ml <strong>of</strong> tryptone soya broth<br />

(TSB). The cells were recovered by centrifugation at<br />

5000 g <strong>for</strong> 30 min at 4 -C. Cells were resuspended in 3<br />

ml <strong>of</strong> 10 mM tris (hydroxyl methyl) amino methane buffer<br />

containing 0.3% (w/v) NaCl (pH 8.0) <strong>and</strong> sonicated with a<br />

MSE Sanyo Sonicator <strong>for</strong> 3 times at 10 Am amplitude <strong>for</strong> 45<br />

s. After centrifugation at 10,000 g <strong>for</strong> 2 min, the<br />

supernatant was transferred to new tubes <strong>and</strong> centrifuged<br />

<strong>for</strong> 1 h at 17,000 g at 4 -C. Resulting pellets <strong>of</strong> cell<br />

envelop suspensions were incubated overnight at 4 -C with<br />

3% (w/v) sodium lauroyl sarcosinate (sarkosyl) in 10 mM tris<br />

buffer. Outer membrane protein was obtained by centrifugation<br />

at 17,000 g <strong>for</strong> 1 h <strong>and</strong> washed twice with distilled<br />

water. The OMP was stored at 20 -C.<br />

The protein content <strong>of</strong> OMP was determined as outlined by<br />

Schacterle <strong>and</strong> Pollack (1973) with little modifications.<br />

Concisely, 5 Al <strong>of</strong> OMP was diluted with 295 Al <strong>of</strong>DWina<br />

test tube. Different concentrations (10 Ag, 60 Ag, 120 Ag, 180<br />

Ag, 240 Ag <strong>and</strong> 300 Ag) <strong>of</strong> bovine serum albumin (BSA) were<br />

prepared in 1% (w/v) sodium dodecyl sulfate (SDS) to a total<br />

volume <strong>of</strong> 300 Al. To all the tubes 1.2 ml <strong>of</strong> 2 Lowry<br />

concentrate was added <strong>and</strong> incubated at room temperature <strong>for</strong><br />

10 min. Thereafter 0.6 ml <strong>of</strong> Folin reagent was added <strong>and</strong><br />

incubated at 55 -C <strong>for</strong> 5 min. The absorbance was measured at<br />

750 nm. Protein concentration <strong>of</strong> OMP was determined from<br />

the st<strong>and</strong>ard graph drawn <strong>for</strong> optical density <strong>of</strong> BSA against<br />

different concentrations.<br />

2.2.2. Production <strong>of</strong> antiserum against crude OMP<br />

Antiserum against crude OMP <strong>of</strong> A. hydrophila subsp.<br />

hydrophila (MTCC 646) was raised in an adult rabbit as per the<br />

S. Arora et al. / International Journal <strong>of</strong> Food Microbiology 106 (2006) 177–183<br />

method described by Santos et al. (1996) <strong>and</strong> Sachan <strong>and</strong><br />

Agarwal (2002). OMP (500 Ag protein) was emulsified with an<br />

equal volume <strong>of</strong> Freund’s complete adjuvant (FCA, Difco). A<br />

rabbit was injected subcutaneously in divided doses at various<br />

dorsal sites. Booster dose was given after 15 days with OMP<br />

(250 Ag protein) emulsified with equal volume <strong>of</strong> Freund’s<br />

incomplete adjuvant (IFCA, Difco) followed by a similar<br />

booster dose after another 15 days. Rabbit were bled 2 weeks<br />

after the last immunization. Preimmune serum was used as<br />

control serum.<br />

2.2.3. St<strong>and</strong>ardization <strong>of</strong> indirect plate <strong>ELISA</strong><br />

The indirect plate <strong>ELISA</strong> was per<strong>for</strong>med as per the <strong>methods</strong><br />

described by Engvall <strong>and</strong> Perlman (1971), Sachan <strong>and</strong> Agarwal<br />

(2002) <strong>and</strong> Ghatak et al. (2003) with suitable modifications.<br />

The test was st<strong>and</strong>ardized by checker board analysis. The<br />

optimum titre <strong>of</strong> anti-OMP serum was found 1:1600 <strong>and</strong> thus<br />

1:800 dilution was used in further studies.<br />

2.3. Duplex-polymerase chain reaction<br />

2.3.1. Preparation <strong>of</strong> DNA template<br />

DNA template was prepared by boiling followed by snap<br />

chilling into ice. One hundred microliters <strong>of</strong> the broth<br />

culture was taken <strong>and</strong> centrifuged at 5000 g <strong>for</strong> 5 min.<br />

The pellet was resuspended in 100 Al PBS. This step was<br />

repeated once <strong>and</strong> the resulting pellet dissolved in PBS was<br />

subjected to vigorous heating in a boiling water bath <strong>for</strong><br />

about 8 min <strong>and</strong> then immediately snap chilled into ice.<br />

From this snap chilled lysate, 3 Al was used as template<br />

source in <strong>PCR</strong>.<br />

2.3.2. Oligonucleotide primers<br />

The primers <strong>for</strong> 16S rRNA <strong>and</strong> aerolysin genes <strong>of</strong><br />

Aeromonas spp. used in this study were got synthesized from<br />

Bangalore Genei. The details <strong>of</strong> primers used <strong>and</strong> their<br />

corresponding amplicons are given in Table 1.<br />

2.3.3. St<strong>and</strong>ardization <strong>of</strong> duplex-<strong>PCR</strong><br />

Based on various trials, the components <strong>of</strong> the reaction<br />

mixture were optimized as follows; 3.0 Al <strong>of</strong> the bacterial cell<br />

Table 1<br />

Details <strong>of</strong> primers used in the study<br />

Sl. No. Primer sequence Target gene Amplicon<br />

size<br />

Reference<br />

1. Forward Primer<br />

5-TCA TGG CTC AGA<br />

TTG AAC GCT-3<br />

Reverse Primer<br />

5-CGG GGC TTT CAC<br />

ATC TAA CTT ATC-3<br />

16S rRNA 599 bp Graf (1999)<br />

2. Forward Primer Aerolysin 252 bp Santos et al.<br />

5-GCA GAA CCC ATC<br />

TAT CCA G-3<br />

Reverse Primer<br />

5-TTT CTC CGG TAA<br />

CAG GAT TG-3<br />

(1999)


lysate, 3.0 Al <strong>of</strong>10 Taq DNA polymerase buffer, 1.5 mM<br />

MgCl 2, 0.32 mM each <strong>of</strong> dATP, dDTP, dGTP, <strong>and</strong> dCTP, 10<br />

pM each <strong>of</strong> the two <strong>for</strong>ward <strong>and</strong> two reverse primers, 1.5 U <strong>of</strong><br />

Taq DNA polymerase <strong>and</strong> sterile milli-Q water to make up the<br />

desired volume <strong>of</strong> 25 Al.<br />

The st<strong>and</strong>ardized amplification reactions <strong>for</strong> the duplex-<br />

<strong>PCR</strong> started with an initial denaturation temperature at 94 -C<br />

<strong>for</strong> 2 min. These were followed by 35 cycles each <strong>of</strong> 1 min<br />

denaturations at 94 -C, 1 min annealing at 56 -C <strong>and</strong> 1 min<br />

extension at 72 -C. This was followed by a final extension <strong>for</strong> 5<br />

min at 72 -C.<br />

2.4. Specificity <strong>of</strong> st<strong>and</strong>ardized I-<strong>ELISA</strong> <strong>and</strong> duplex-<strong>PCR</strong><br />

assays<br />

The specificity <strong>of</strong> the st<strong>and</strong>ardized I-<strong>ELISA</strong> <strong>and</strong> <strong>PCR</strong> assays<br />

was validated by subjected various Gram-negative <strong>and</strong> Grampositive<br />

cultures (Table 2) to I-<strong>ELISA</strong> <strong>and</strong> duplex-<strong>PCR</strong>.<br />

For assessing specificity <strong>of</strong> I-<strong>ELISA</strong> the plates were coated<br />

with 10 9 cells/ml <strong>of</strong> different organisms to be tested <strong>and</strong><br />

treating them with 1:800 dilution <strong>of</strong> anti-OMP serum.<br />

For duplex-<strong>PCR</strong>, the bacterial cultures were inoculated in<br />

BHI broth <strong>and</strong> after incubating overnight templates were<br />

prepared <strong>and</strong> 3 Al <strong>of</strong> each bacterial lysate was subjected to<br />

duplex-<strong>PCR</strong> assay.<br />

2.5. Experimental inoculation studies in foods<br />

Experimental inoculation studies in chicken <strong>and</strong> milk were<br />

carried out to assess the suitability <strong>of</strong> the st<strong>and</strong>ardized I-<strong>ELISA</strong><br />

<strong>and</strong> duplex-<strong>PCR</strong> <strong>methods</strong> <strong>for</strong> detection <strong>of</strong> A. hydrophila subsp.<br />

hydrophila (MTCC 646).<br />

One hundred <strong>and</strong> twenty-five grams <strong>of</strong> chicken samples<br />

were collected from a retail poultry shops <strong>and</strong> were immediately<br />

transferred to laboratory under refrigerated conditions <strong>and</strong><br />

analyzed <strong>for</strong> presence <strong>of</strong> Aeromonas within 2 h <strong>of</strong> collection.<br />

Similarly, 125 ml <strong>of</strong> milk samples were collected from<br />

unorganized dairies <strong>and</strong> were immediately transferred to<br />

laboratory under refrigerated conditions <strong>and</strong> analyzed <strong>for</strong><br />

presence <strong>of</strong> Aeromonas within 2 h <strong>of</strong> collection.<br />

Serial 10 fold dilutions (10 0 to 10 8 ) <strong>of</strong> the st<strong>and</strong>ard strain <strong>of</strong><br />

A. hydrophila subsp. hydrophila (MTCC 646) were made in<br />

sterile PBS. One milliliter <strong>of</strong> these different dilutions were<br />

inoculated in 9 g <strong>of</strong> homogenized chicken samples/9 ml milk<br />

samples along with negative controls followed by incubation in<br />

90 ml APW-C.<br />

The experimentally inoculated chicken <strong>and</strong> milk samples<br />

were then subjected to I-<strong>ELISA</strong>, duplex-<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong><br />

<strong>methods</strong> after 12 h enrichment in APW-C broth. In total three<br />

trails were conducted.<br />

2.6. Detection <strong>of</strong> aeromonads from naturally contaminated<br />

food samples<br />

S. Arora et al. / International Journal <strong>of</strong> Food Microbiology 106 (2006) 177–183 179<br />

Fifty samples each <strong>of</strong> chicken (25 g) <strong>and</strong> milk (25 ml) were<br />

collected as described earlier <strong>and</strong> examined <strong>for</strong> the presence <strong>of</strong><br />

Aeromonas spp. using I-<strong>ELISA</strong>, duplex-<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong><br />

Table 2<br />

Bacterial strains used in the study<br />

Sl. No. Name <strong>of</strong> organism Strain number<br />

Aeromonas strains<br />

1. Aeromonas hydrophila subsp. hydrophila MTCC 646<br />

2. A. hydrophila Env. 1<br />

3. A. hydrophila Env. 2<br />

4. A. hydrophila Env. 3<br />

5. A. hydrophila Clin. 1<br />

6. A. hydrophila 4030<br />

7. A. hydrophila 4048<br />

8. A. hydrophila A308<br />

9. A. veronii NBIMCC 150<br />

10. A. veronii NBIMCC 1048<br />

11. A. veronii 4074<br />

12. A. veronii 4066<br />

13. A. veronii 4042<br />

14. A. caviae Ac. No. 5<br />

15. A. caviae Ac. No. 7<br />

16. A. caviae Ac. No. 30<br />

17. A. caviae Sch. 3<br />

18. A. j<strong>and</strong>aei A314<br />

19. A. culicicula MTCC 3249<br />

Other Gram-negative strains<br />

20. Brucella melitensis S19<br />

21. Citrobacter spp. A647<br />

22. Enterobacter spp. A514<br />

23. Escherichia coli BM-14<br />

24. Hafnia alvei A267<br />

25. Klebsiella spp. A340<br />

26. Pasteurella multocida A538<br />

27. Proteus vulgaris A088<br />

28. Pseudomonas aeruginosa LB 01<br />

29. Pseudomonas spp. A692<br />

30. Salmonella spp. A598<br />

31. Serratia spp. A550<br />

32. Shigella flexineri A425<br />

33. Vibrio parahaemolyticus A753<br />

34. Yersinia enterocolitica A746<br />

Gram positive strains<br />

35. Bacillus cereus A431<br />

36. Corynebacterium diphtheriae A003<br />

37. Listeria monocytogenes MTCC 1143<br />

38. Rhodococcus equi MTCC 1153<br />

39. Staphylococcus aureus MTCC 1144<br />

40. Streptococcus faecalis MTCC 439<br />

<strong>methods</strong> simultaneously after single step selective enrichment<br />

in APW-C broth <strong>for</strong> 12 h.<br />

3. Results <strong>and</strong> discussion<br />

Aeromonads have high ability <strong>of</strong> adaptation to different<br />

environments (Mateos et al., 1993) <strong>and</strong> possess amazing<br />

properties which enable them to survive <strong>and</strong> thrive in diverse<br />

conditions (Ascencio et al., 1995; Agarwal, 1997). This makes<br />

them widely distributed in nature having cosmopolitan occurrence<br />

both in aquatic <strong>and</strong> terrestrial environments. Recent years have<br />

witnessed motile aeromonads emerging as an important foodborne<br />

pathogen worldwide (Kirov, 1993; Merino et al., 1993).<br />

Numerous detection <strong>methods</strong>, conventional as well as rapid,<br />

have been tried <strong>for</strong> detecting Aeromonas spp. in foods


180<br />

(Agarwal <strong>and</strong> Bhilegaonkar, 2003; Agarwal et al., 2003a). Here<br />

three different <strong>methods</strong> viz., indirect-<strong>ELISA</strong>, duplex-<strong>PCR</strong> <strong>and</strong><br />

conventional <strong>cultural</strong> method were compared <strong>for</strong> their specificity<br />

<strong>and</strong> sensitivity in detecting Aeromonas spp. in foods <strong>of</strong><br />

animal origin.<br />

3.1. Indirect plate <strong>ELISA</strong><br />

OMPs have attracted significant attention in recent years by<br />

numerous workers <strong>for</strong> their diagnostic potentials (Kuijper et al.,<br />

1989; Santos et al., 1996; Sachan <strong>and</strong> Agarwal, 2002; Ghatak<br />

et al., 2003). OMPs have also been used <strong>for</strong> development <strong>of</strong><br />

immunoassays <strong>for</strong> detecting Aeromonas providing promising<br />

results (Sachan <strong>and</strong> Agarwal, 2002; Ghatak et al., 2003).<br />

For st<strong>and</strong>ardization <strong>of</strong> OMP based <strong>ELISA</strong>, OMP were<br />

extracted by ultrasonication <strong>and</strong> centrifugation. Separation <strong>of</strong><br />

inner <strong>and</strong> outer membranes was achieved by incubation with<br />

sarkosyl. This method <strong>of</strong> separating OMPs is known to give full<br />

recovery <strong>of</strong> OMPs (Kuijper et al., 1989; Ghatak et al., 2001).<br />

Sera were raised against the OMPs in rabbit <strong>and</strong> this method<br />

has been successfully used by previous workers <strong>for</strong> raising<br />

antiserum against outer membrane proteins <strong>of</strong> the bacteria<br />

(Sachan <strong>and</strong> Agarwal, 2002; Ghatak et al., 2003).<br />

The antiserum raised against OMP was found to be <strong>of</strong> high<br />

antibody titre as was reported earlier by Sachan <strong>and</strong> Agarwal<br />

(2002). This high titre <strong>of</strong> antiserum is suggested to have an<br />

advantage <strong>of</strong> avoiding cross-reactions by dilution <strong>of</strong> antiserum<br />

(Sachan <strong>and</strong> Agarwal, 2002) as evident in this study where no<br />

cross-reaction was observed at the low dilution <strong>of</strong> serum being<br />

used.<br />

3.2. Duplex-<strong>PCR</strong><br />

Polymerase chain reaction (<strong>PCR</strong>) has been one <strong>of</strong> the most<br />

preferred tools in food microbiology in recent years <strong>for</strong><br />

detection <strong>of</strong> food borne pathogens due to its rapid nature <strong>and</strong><br />

high specificity <strong>and</strong> sensitivity (Olsen, 2000). However, <strong>for</strong><br />

Aeromonas spp., the <strong>PCR</strong> has been mostly used <strong>for</strong> the<br />

characterization <strong>of</strong> isolates either <strong>for</strong> their phylogenetic<br />

position or <strong>for</strong> virulence characterization (Graf, 1999; Kingombe<br />

et al., 1999; Sechi et al., 2002; Abdullah et al., 2003;<br />

Datta et al., 2003). There are hardly any reports on the use <strong>of</strong><br />

<strong>PCR</strong> <strong>for</strong> detection <strong>of</strong> Aeromonas from foods (Gonzalez-<br />

Rodriguez et al., 2002; Porteen, 2004).<br />

In this study duplex-<strong>PCR</strong> system was st<strong>and</strong>ardized using<br />

primers targeted <strong>for</strong> 16S rRNA gene, which is genus specific<br />

primer <strong>for</strong> detecting all species <strong>of</strong> Aeromonas, <strong>and</strong> <strong>for</strong><br />

aerolysin gene a major virulence factor <strong>of</strong> Aeromonas spp.<br />

(Graf, 1999; Gonzalez-Rodriguez et al., 2002). The st<strong>and</strong>ardized<br />

duplex-<strong>PCR</strong> was analyzed <strong>for</strong> detecting aeromonads in<br />

spiked food samples <strong>and</strong> the results obtained were validated<br />

with the natural samples.<br />

The st<strong>and</strong>ardized duplex-<strong>PCR</strong> revealed the presence <strong>of</strong> two<br />

b<strong>and</strong>s after agarose gel electrophoresis. One amplicon <strong>of</strong> 252<br />

bp corresponding to aerolysin gene (Santos et al., 1999) <strong>and</strong><br />

other <strong>of</strong> 599 bp corresponding to 16S rRNA gene (Graf, 1999)<br />

were obtained.<br />

S. Arora et al. / International Journal <strong>of</strong> Food Microbiology 106 (2006) 177–183<br />

The boiling <strong>and</strong> snap chilling method was used <strong>for</strong> bacterial<br />

lysis. This method has been reported to be a simple, rapid <strong>and</strong><br />

reliable method (Surendran, 2002). It does not require any<br />

sophisticated equipment <strong>and</strong> time <strong>of</strong> processing is very less as<br />

compared to other <strong>methods</strong> like sonication. Thus, it is apt <strong>for</strong><br />

large scale testing <strong>of</strong> samples. Also there are very less chances<br />

<strong>of</strong> contamination <strong>of</strong> DNA (Surendran, 2002; Balamurugan,<br />

2002). This method also provides freedom from any possible<br />

inhibitory effect on <strong>PCR</strong> as mediated by detergents (SDS or<br />

TritionX-100) used in certain other <strong>methods</strong> <strong>of</strong> DNA extraction<br />

(Surendran, 2002). The bacterial lysate prepared after two<br />

washings in PBS was used as it is reported to give b<strong>and</strong>s <strong>of</strong><br />

higher intensities (Porteen, 2004).<br />

Direct application <strong>of</strong> <strong>PCR</strong> to food samples <strong>of</strong>ten results in<br />

absence <strong>of</strong> detectable amplification product or poor sensitivity<br />

(Dickinson et al., 1995) as a result <strong>of</strong> the inhibitory effect<br />

exerted on <strong>PCR</strong> by the complex composition <strong>of</strong> the food<br />

matrices leading to false negative results (Lantz et al., 1994;<br />

Wang et al., 1997). The inclusion <strong>of</strong> an enrichment step be<strong>for</strong>e<br />

<strong>PCR</strong> helped in overcoming this problem.<br />

In addition to reducing the negative influence <strong>of</strong> food matrix<br />

by dilution, the enrichment step also enhances the sensitivity <strong>of</strong><br />

the assay by increasing the number <strong>of</strong> microorganisms <strong>and</strong><br />

eliminates the risk <strong>of</strong> amplifying DNA belonging to the dead<br />

<strong>and</strong> non-culturable cells (Josephson et al., 1993). The<br />

enrichment step increases the number <strong>of</strong> viable cells whereas<br />

the dead <strong>and</strong> non-culturable cells do not grow in the<br />

enrichment broth <strong>and</strong> thus unlikely to be detected by <strong>PCR</strong><br />

assay (Surendran, 2002). A single step enrichment <strong>of</strong> samples<br />

(spiked or natural) in APW-C was thus followed; as had been<br />

recommended by numerous workers (Wang et al., 1997; Olsen,<br />

2000; Porteen, 2004). This enrichment step <strong>of</strong> only 12 h still<br />

allows the whole procedure to be completed within a single<br />

working day schedule.<br />

Use <strong>of</strong> APW-C as enrichment broth has an additional<br />

advantage in the cephalothin added to it which suppresses<br />

significant initial levels <strong>of</strong> background micro flora that can<br />

interfere with the <strong>PCR</strong>. Sachan <strong>and</strong> Agarwal (2000) found out<br />

that cephalothin in concentration <strong>of</strong> 10 mg/l had no inhibitory<br />

effect on various strains <strong>of</strong> Aeromonas <strong>and</strong> at the same time<br />

exerted inhibitory effect on the most <strong>of</strong> the other related<br />

foodborne pathogens tested.<br />

3.3. Specificity <strong>of</strong> I-<strong>ELISA</strong> <strong>and</strong> duplex-<strong>PCR</strong><br />

Seven different strains <strong>of</strong> A. hydrophila, 5 different strains<br />

<strong>of</strong> A. veronii, 4 different strains <strong>of</strong> A. caviae, a single strain<br />

each <strong>of</strong> A. j<strong>and</strong>aei <strong>and</strong> A. culicicula (Table 2) were subjected<br />

to the st<strong>and</strong>ardized indirect-<strong>ELISA</strong>. All the strains gave<br />

positive reactions <strong>and</strong> thus strengthening the claim <strong>of</strong> the<br />

st<strong>and</strong>ardized protocol <strong>for</strong> detecting Aeromonas irrespective <strong>of</strong><br />

type <strong>of</strong> stain involved as was reported by Sachan <strong>and</strong><br />

Agarwal (2002). Using duplex-<strong>PCR</strong> also these strains tested<br />

positive. Graf (1999) was also able to detect different species<br />

<strong>of</strong> Aeromonas using the primer targeted <strong>for</strong> 16S rRNA<br />

primer set. Similarly, Gonzalez-Rodriguez et al. (2002)<br />

reported primer set targeted against aerolysin gene to be


Table 3<br />

Results <strong>of</strong> detection <strong>of</strong> Aeromonas from artificially inoculated food samples<br />

Sl. No. Aeromonas<br />

concentration/g <strong>of</strong><br />

meat or (ml <strong>of</strong> milk)<br />

I-<strong>ELISA</strong> Duplex-<strong>PCR</strong> Cultural<br />

method<br />

1. 1 cell/g + +<br />

2. 10 cells/g + +<br />

3. 10 2 cells/g + +<br />

4. 10 3 cells/g + + +<br />

5. 10 4 cells/g + + +<br />

6. 10 5 cells/g + + +<br />

7. 10 6 cells/g + + +<br />

8. 10 7 cells/g + + +<br />

9. Negative control<br />

species specific after analyzing it <strong>for</strong> various species <strong>of</strong><br />

Aeromonas.<br />

Six Gram-positive strains <strong>and</strong> 15 other Gram-negative<br />

bacteria (Table 2) were also tested <strong>for</strong> a possible misdetection<br />

by these st<strong>and</strong>ardized protocols. None <strong>of</strong> the other bacteria<br />

gave positive results either by indirect-<strong>ELISA</strong> or by duplex-<br />

<strong>PCR</strong>. Sachan <strong>and</strong> Agarwal (2002) also reported none <strong>of</strong> the<br />

strains used in this study to cross-react in the OMP based<br />

indirect-<strong>ELISA</strong> st<strong>and</strong>ardized by her. Graf (1999) tested many<br />

bacterial strains other than that <strong>of</strong> Aeromonas in his study using<br />

16S rRNA primers; but none <strong>of</strong> them gave positive products.<br />

3.4. Analysis <strong>of</strong> results <strong>of</strong> artificial inoculation studies<br />

S. Arora et al. / International Journal <strong>of</strong> Food Microbiology 106 (2006) 177–183 181<br />

The results <strong>of</strong> detection <strong>of</strong> Aeromonas from spiked samples<br />

by <strong>cultural</strong> <strong>methods</strong> revealed that after a single step enrichment<br />

<strong>of</strong> spiked food samples at 37 -C <strong>for</strong> 12 h in APW-C when the<br />

plating was done on ADA it detected up to 1 cell/ml or g <strong>of</strong><br />

food samples after incubating the ADA plates at 37 -C <strong>for</strong> 24 h.<br />

Porteen (2004) was also able to detect a minimum <strong>of</strong> 1 cell/ml<br />

or g <strong>of</strong> food in 40% <strong>of</strong> the trials conducted by him.<br />

The results <strong>of</strong> detection <strong>of</strong> Aeromonas from spiked samples<br />

by indirect-<strong>ELISA</strong> (Table 3) revealed a minimum detection<br />

level <strong>of</strong> 10 3 cells/ml or g <strong>of</strong> milk <strong>and</strong> chicken samples,<br />

respectively. Sachan <strong>and</strong> Agarwal (2002) observed that OMP<br />

based indirect-<strong>ELISA</strong> gave optimum results at cell concentrations<br />

<strong>of</strong> 10 6 or more. But in the present study a single step<br />

enrichment <strong>of</strong> the artificially inoculated food at 37 -C <strong>for</strong> 12<br />

h in APW-C was involved, which was not used by her. Thus,<br />

the final cell concentration <strong>of</strong> the Aeromonas cells in the<br />

enrichment broth tube containing food sample inoculated with<br />

10 3 cells/ml or g might have reached up to 10 6 cells/ml or g.<br />

Analyzing the results <strong>of</strong> detection <strong>of</strong> Aeromonas from<br />

spiked samples by duplex-<strong>PCR</strong> revealed its superiority in<br />

rapidly detecting Aeromonas in foods at a concentration <strong>of</strong><br />

single cell/ml or g. Detection limits <strong>of</strong> 0.5 10 2 cells <strong>of</strong><br />

Aeromonas from spiked food samples using 16S rDNA <strong>PCR</strong><br />

were reported earlier by Khan <strong>and</strong> Cerniglia (1997) while<br />

Porteen (2004) reported a minimum detection level <strong>of</strong> 1 cells/<br />

ml or g using 16S rRNA <strong>PCR</strong> in a single trial out <strong>of</strong> five trails<br />

conducted by him to detect Aeromonas in artificially inoculated<br />

milk <strong>and</strong> chicken samples after 12 h enrichment at 37 -C in<br />

APW-C. Using the aerolysin primers Gonzalez-Rodriguez et al.<br />

(2002) reported a minimum detection level <strong>of</strong> 6.91 cfu/g <strong>of</strong><br />

initial inoculation, after 16–18 h enrichment, from artificially<br />

inoculated fish meat samples. On, the other h<strong>and</strong> Porteen<br />

(2004) reported a minimum detection level <strong>of</strong> 10 2 cells/g from<br />

spiked meat samples <strong>and</strong> 10 3 cells/ml from spiked milk<br />

samples, after 12 h enrichment at 37 -C in APW-C in a single<br />

trial out <strong>of</strong> the five trails conducted. Variations in results from<br />

spiked food samples may be attributed to the overgrowth <strong>of</strong><br />

other competing micro flora (Lee et al., 1990).<br />

The statistical analysis <strong>of</strong> the results <strong>of</strong> the artificial<br />

inoculation studies in chicken <strong>for</strong> determining the sensitivity<br />

<strong>for</strong> I-<strong>ELISA</strong>, duplex-<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong> method revealed the<br />

sensitivity values <strong>for</strong> both duplex-<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong> method to<br />

be 100% as no false negative result was obtained. The<br />

sensitivity <strong>for</strong> I-<strong>ELISA</strong> was found to be 66% as it gave false<br />

negative results in dilutions in concentrations <strong>of</strong> 10 2 to 10cells/ml.<br />

Specificity <strong>of</strong> all the three <strong>methods</strong> viz., I-<strong>ELISA</strong>, duplex-<br />

<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong> method <strong>for</strong> detecting Aeromonas spp. in<br />

artificial inoculation studies in chicken was found to be 100%<br />

there was no false positive reaction in the negative controls.<br />

3.5. Detection <strong>of</strong> aeromonads from naturally contaminated<br />

food samples<br />

Three samples out <strong>of</strong> the 50 chicken samples screened 3<br />

were found positive <strong>for</strong> Aeromonas spp. by duplex-<strong>PCR</strong> (Fig.<br />

1) as well as I-<strong>ELISA</strong>. These samples also found positive by<br />

<strong>cultural</strong> <strong>methods</strong>. Thus, the incidence <strong>of</strong> Aeromonas in chicken<br />

samples turned out to be 6%; which were comparable to the<br />

incidence rate (4.0%) reported by Porteen (2004). Higher<br />

incidence rates ranging from 16.67% to 70% were recorded by<br />

other workers (Bok et al., 1986; Khurana <strong>and</strong> Kumar, 1997;<br />

Neyts et al., 2000). The environmental conditions prevailing at<br />

the time <strong>of</strong> sampling <strong>and</strong> the difference in geographical<br />

Fig. 1. Duplex-<strong>PCR</strong> results <strong>for</strong> screening <strong>of</strong> natural samples. Lane M: 100 bp<br />

DNA ladder plus; Lane 1: Milk isolate; Lane 2: Chicken isolate-2; Lane 3:<br />

Chicken isolate-1 Lane 4: Chicken isolate-3.


182<br />

locations may be the possible reasons <strong>for</strong> these variations in<br />

incidence rates <strong>of</strong> Aeromonas in poultry.<br />

One <strong>of</strong> the 50 milk samples screened turned out to be<br />

positive <strong>for</strong> Aeromonas. This also gave positive result with all<br />

three <strong>methods</strong> viz., duplex-<strong>PCR</strong> (Fig. 1), I-<strong>ELISA</strong> as well as<br />

<strong>cultural</strong> method. The incidence rate <strong>of</strong> Aeromonas in milk thus<br />

was 2.0% which was comparable to the isolation rate <strong>of</strong> 2.85%,<br />

5.56% <strong>and</strong> 4.0% reported by Agarwal et al. (2000), Kumar et<br />

al. (2001) <strong>and</strong> Porteen (2004), respectively.<br />

The study revealed that there was a good correlation<br />

between duplex-<strong>PCR</strong> <strong>and</strong> <strong>cultural</strong> method but indirect-<strong>ELISA</strong>,<br />

though detecting all naturally contaminated chicken <strong>and</strong> milk<br />

samples, was not able to detect Aeromonas below the<br />

concentrations <strong>of</strong> 10 3 cells/ml or g in the spiking studies. This<br />

limits the use <strong>of</strong> indirect-<strong>ELISA</strong> as a fool-pro<strong>of</strong> detection<br />

method <strong>for</strong> aeromonads in foods when compared to <strong>PCR</strong>.<br />

Thus, it can be concluded that both OMP based indirect<br />

plate <strong>ELISA</strong> as well as duplex-<strong>PCR</strong>, following 12 h enrichment<br />

in APW-C, are reliable <strong>methods</strong> <strong>for</strong> detection <strong>of</strong> Aeromonas<br />

from foods <strong>of</strong> animal origin on account <strong>of</strong> their specificity; <strong>and</strong><br />

duplex-<strong>PCR</strong>, following 12 h enrichment in APW-C, is the<br />

method <strong>of</strong> choice amongst the three <strong>methods</strong> compared in this<br />

study on account <strong>of</strong> its rapidity <strong>and</strong> sensitivity as well as<br />

specificity.<br />

Acknowledgements<br />

The authors are thankful to the Director, Indian Veterinary<br />

Research Institute (IVRI), Izatnagar, Bareilly (UP), India <strong>for</strong><br />

permitting the first author to conduct this work at IVRI.<br />

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