UNIVERSITY OF CALIFORNIA, SAN DIEGO

More documents

Recommendations

Info

8 CALIFORNIA, SAN DIEGO E: Stat., Nonlinear, Soft Matter Phys, 75, 061116/1-061116/8 (2007). Katja Lindenberg, J. M. Sancho, A. M. Lacasta and I. M. Sokolov, Dispersionless Transport in a Washboard Potential, Phys. Rev. Lett, 98, 020602/1-020602/4 (2007). Alexandre Rosas, Aldo H. Romero, Vitali F. Nesterenko and Katja Lindenberg, Observation of Two-Wave Structure in Strongly Nonlinear Dissipative Granular Chains, Phys. Rev. Lett, 98, 164301/1-164301/4 (2007). Massimiliano Esposito and Katja Lindenberg, Continuous time random walk for open systems: fluctuation theorems and counting statistics, arXiv.org, e-Print Arch., Condens. Matter, 1-13 (2008). Alexandre Rosas, Aldo H. Romero, Vitali F. Nesterenko and Katja Lindenberg, Short pulse dynamics in strongly nonlinear dissipative granular chains, arXiv.org, e-Print Arch., Condens. Matter, 1-16 (2008). I. M. Sokolov, S. B. Yuste, J. J. Ruiz-Lorenzo and Katja Lindenberg, Mean field model of coagulation and annihilation reactions of a subdiffusive species, arXiv.org, e-Print Arch., Condens. Matter, 1-9 (2008). Ramon Reigada, Javier Buceta, Jordi Gomez, Francesc Sagues and Katja Lindenberg, Phase separation in three-component lipid membranes: From Monte Carlo simulations to Ginzburg-Landau equations, J. Chem. Phys, 128, 025102/1- 025102/10 (2008). M. Khoury, A. M. Lacasta, J. M. Sancho, A. H. Romero and Katja Lindenberg, Charged particle transport in antidot lattices in the presence of magnetic and electric fields: Langevin approach, Phys. Rev. B, 78, 155433/1-155433/9 (2008). S. B. Yuste, G. Oshanin, Katja Lindenberg, O. Benichou and J. Klafter, Survival probability of a particle in a sea of mobile traps: A tale of tails, Phys. Rev. E, 78, 021105/1- 021105/7 (2008). S. B. Yuste, J. Klafter and Katja Lindenberg, Number of distinct sites visited by a subdiffusive random walker, Phys. Rev. E, 77, 032101/1-032101/3 (2008). A. Rosas, A. H. Romero, V. F. Nesterenko and Katja Lindenberg, Short-pulse dynamics in strongly nonlinear dissipative granular chains, Phys. Rev. E, 78, 051303/1-051303/10 (2008). Massimiliano Esposito and Katja Lindenberg, Continuoustime random walk for open systems: Fluctuation theorems and counting statistics, Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys, 77, 051119/1-051119/12 (2008). Kevin Wood, Nonequilibrium phase transitions in stochastic spatially extended systems. (D) MAGDE, DOUGLAS (b.1942) Professor. B.S, 1963, Boston College; M.S, 1968, Cornell University; Ph.D, 1970, Cornell University. Postdoctoral Resident Associate, 1970-1972, Cornell University; Postdoctoral Resident Associate, 1972-1974, Washington State University. Biophysics/Biophysical Chemistry; Physical Chemistry. work. The studies show, for example, how a substrate may be attracted to the active site of an enzyme by electrostatic interactions. We also use these methods for computer-aided drug discovery. TEL: (858) 534-2905 FAX: (858) 534-4974 Web: mccammon.ucsd.edu/ Email: jmccammon@ucsd.edu Alemayehu A. Gorfe, Arneh Babakhani and J. Andrew McCammon, Free energy profile of H-ras membrane anchor upon membrane insertion, Angew. Chem., Int. Ed, 46, 8234- 8237 (2007). Riccardo Baron and J. Andrew McCammon, Dynamics, Hydration, and Motional Averaging of a Loop-Gated Artificial Protein Cavity: The W191G Mutant of Cytochrome c Peroxidase in Water as Revealed by Molecular Dynamics Simulations, Biochemistry, 46, 10629-10642 (2007). Yuhui Cheng, Jason K. Suen, Zoran Radic, Stephen D. Bond, Michael J. Holst and J. Andrew McCammon, Continuum simulations of acetylcholine diffusion with reaction-determined boundaries in neuromuscular junction models, Biophys. Chem, 127, 129-139 (2007). Xiaolin Cheng, Ivaylo Ivanov, Hailong Wang, Steven M. Sine and J. Andrew McCammon, Nanosecond-timescale conformational dynamics of the human �7 nicotinic acetylcholine receptor, Biophys. J, 93, 2622-2634 (2007). Yuhui Cheng, Jason K. Suen, Deqiang Zhang, Stephen D. Bond, Yongjie Zhang, Yuhua Song, Nathan A. Baker, Chandrajit L. Bajaj, Michael J. Holst and J. Andrew McCammon, Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations, Biophys. J, 92, 3397-3406 (2007). Joanna Trylska, Valentina Tozzini, Chia-en A. Chang and J. Andrew McCammon, HIV-1 protease substrate binding and product release pathways explored with coarse-grained molecular dynamics, Biophys. J, 92, 4179-4187 (2007). Arneh Babakhani, Alemayehu A. Gorfe, Justin Gullingsrud, Judy E. Kim and J. Andrew McCammon, Peptide insertion, positioning, and stabilization in a membrane: insight from an all-atom molecular dynamics simulation, Biopolymers, 85, 490-497 (2007). Jesper Soerensen, Donald Hamelberg, Birgit Schioett and J. Andrew McCammon, Comparative MD analysis of the stability of transthyretin providing insight into the fibrillation mechanism, Biopolymers, 86, 73-82 (2007). Chia-En A. Chang, Joanna Trylska, Valentina Tozzini and J. Andrew McCammon, Binding pathways of ligands to HIV-1 protease: coarse-grained and atomistic simulations, Chem. Biol. Drug Des, 69, 5-13 (2007). Cesar Augusto F. de Oliveira, Maurice Zissen, John Mongon and J. Andrew Mccammon, Molecular dynamics simulations of metalloproteinases types 2 and 3 reveal differences in the dynamic behavior of the S1’ binding pocket, Curr. Pharm. Des, 13, 3471-3475 (2007). Richard H. Henchman and J. Andrew McCammon, Protein structural flexibility: molecular motions, Handb. Proteins, 1, Cesar Augusto F. de Oliveira, Donald Hamelberg and J. Andrew McCammon, Estimating kinetic rates from accelerated molecular dynamics simulations: Alanine dipeptide in explicit solvent as a case study, J. Chem. Phys, 127, 175105/ 1-175105/8 (2007). Benzhuo Lu and J. Andrew McCammon, Improved Boundary Element Methods for Poisson-Boltzmann Electrostatic Potential and Force Calculations, J. Chem. Theory Comput, 3, 1134-1142 (2007). John Mongan, Carlos Simmerling, J. Andrew McCammon, David A. Case and Alexey Onufriev, Generalized Born Model with a Simple, Robust Molecular Volume Correction, J. Chem. Theory Comput, 3, 156-169 (2007). J. Swanson, J. Wagoner, N. Baker and J. A. McCammon, Optimizing the poisson dielectric boundary with explicit solvent simulations: lessons learned with atom-centered dielectric functions, J. Chem. Theory Comput, 3, 170-183 (2007). Benzhuo Lu, Xiaolin Cheng and J. Andrew McCammon, New-version-fast-multipole-method” accelerated electrostatic calculations in biomolecular systems, J. Comput. Phys, 226, 1348-1366 (2007). Alemayehu A. Gorfe, Michael Hanzal-Bayer, Daniel Abankwa, John F. Hancock and J. Andrew McCammon, Structure and Dynamics of the Full-Length Lipid-Modified H-Ras Protein in a 1,2-Dimyristoylglycero-3-phosphocholine Bilayer, J. Med. Chem, 50, 674-684 (2007). Barry J. Grant, J. Andrew McCammon, Leo S. D. Caves and Robert A. Cross, Multivariate Analysis of Conserved Se- quence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain, J. Mol. Biol, 368, 1231-1248 (2007). Valentina Tozzini, Joanna Trylska, Chia-en Chang and J. Andrew McCammon, Flap opening dynamics in HIV-1 protease explored with a coarse-grained model, J. Struct. Biol, 157, 606-615 (2007). Philip R. Leduc, Michael S. Wong, Placid M. Ferreira, Richard E. Groff, Kiryn Haslinger, Michael P. Koonce, Woo Y. Lee, J. Christopher Love, J. Andrew McCammon, Nancy A. Monteiro-Riviere, Vincent M. Rotello, Gary W. Rubloff, Robert Westervelt and Minami Yoda, Towards an in vivo biologically inspired nanofactory, Nat. Nanotechnol, 2, 3-7 (2007). Rommie E. Amaro, Robert V. Swift and J. Andrew McCammon, Functional and structural insights revealed by molecular dynamics simulations of an essential RNA editing ligase in Trypanosoma brucei, PLoS Neglected Trop. Dis, 1, No pp. given (2007). Ivaylo Ivanov, John A. Tainer and J. Andrew McCammon, Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV, Proc. Natl. Acad. Sci. U. S. A, 104, 1465-1470 (2007). Donald Hamelberg, Tongye Shen and J. Andrew McCammon, A proposed signaling motif for nuclear import in mRNA processing via the formation of arginine claw, Proc. Natl. Acad. Sci. U. S. A, 104, 14947-14951 (2007). Jacky Chi Ki Ngo, Justin Gullingsrud, Kayla Giang, Me- Femtosecond lasers; hemoglobin, guanylatecyclase and 166-171 (2007). linda Jean Yeh, Xiang-Dong Fu, Joseph A. Adams, J. Another heme enzymes; inorganic photochemistry, chemi- Alemayehu A. Gorfe, Arneh Babakhani and J. Andrew drew McCammon and Gourisankar Ghosh, SR Protein Ki- cal sensors, and general photophysical chemistry. TEL: (858) 534-3199 FAX: (858) 822-2563 Email: dmagde@ucsd.edu Edith C. Glazer, Douglas Magde and Yitzhak Tor, Ruthenium Complexes That Break the Rules: Structural Features Controlling Dual Emission, J. Am. Chem. Soc, 129, 8544- 8551 (2007). McCammon, H-ras Protein in a Bilayer: Interaction and Structure Perturbation, J. Am. Chem. Soc, 129, 12280-12286 (2007). Yuhui Cheng, Xiaolin Cheng, Zoran Radic and J. Andrew McCammon, Acetylcholinesterase: Mechanisms of Covalent Inhibition of Wild-Type and H447I Mutant Determined by Computational Analyses, J. Am. Chem. Soc, 129, 6562-6570 (2007). nase 1 Is Resilient to Inactivation, Structure (Cambridge, MA, U. S.), 15, 123-133 (2007). Robert V. Swift and J. Andrew McCammon, Catalytically Requisite Conformational Dynamics in the mRNA-Capping Enzyme Probed by Targeted Molecular Dynamics, Biochem- istry, 47, 4102-4111 (2008). Alemayehu A. Gorfe, Chia-en A. Chang, Ivaylo Ivanov and J. Andrew McCammon, Dynamics of the acetylcholin- MARTI, K. (b.1936) Professor Emeritus. M.S, 1963, University of Berne; Ph.D, 1965, University of Berne. Postgraduate Resident Chemist, 1965-1968, University of California, San Diego; Guggenheim Fellowship, 1976. Variations in isotopic compositions and origin of the Rommie E. Amaro, David D. L. Minh, Lily S. Cheng, William M. Lindstrom, Jr., Arthur J. Olson, Jung-Hsin Lin, Wilfred W. Li and J. Andrew McCammon, Remarkable Loop Flexibility in Avian Influenza N1 and Its Implications for Antiviral Drug Design, J. Am. Chem. Soc, 129, 7764-7765 (2007). esterase tetramer, Biophys. J, 94, 1144-1154 (2008). Alemayehu A. Gorfe, Riccardo Baron and J. Andrew McCammon, Water-membrane partition thermodynamics of an amphiphilic lipopeptide: an enthalpy-driven hydrophobic effect, Biophys. J, 95, 3269-3277 (2008). Yuhui Cheng, Chia-en A. Chang, Zeyun Yu, Yongjie chemical elements; extinct elements; nuclear reactions Ivaylo Ivanov, Xiaolin Cheng, Steven M. Sine and J. An- Zhang, Meihao Sun, Thomas S. Leyh, Michael J. Holst and J. induced by cosmic rays; history of the moon, history of drew McCammon, Barriers to Ion Translocation in Cationic Andrew McCammon, Diffusional channeling in the sulfate- Mars, the meteorites and the solar system. TEL: (858) 534-2939 FAX: (858) 534-7441 Email: kmarti@ucsd.edu Publication list has not been verified by the department. and Anionic Receptors from the Cys-Loop Family, J. Am. Chem. Soc, 129, 8217-8224 (2007). Li-Tien Cheng, Joachim Dzubiella, J. Andrew McCammon and Bo Li, Application of the level-set method to the implicit solvation of nonpolar molecules, J. Chem. Phys, 127, activating complex: combined continuum modeling and coarse-grained Brownian dynamics studies, Biophys. J, 95, 4659-4667 (2008). Sergio E. Wong, Riccardo Baron and J. Andrew McCammon, Hot-spot residues at the E9/Im9 interface help binding A. J. T. Jull, D. Lal, S. Taylor, R. Wieler, A. Grimberg, L. 084503/1-084503/10 (2007). via different mechanisms, Biopolymers, 89, 916-920 (2008). Vacher, L. R. McHargue, S. P. H. T. Freeman, C. Maden, C. Ilja V. Khavrutskii and J. Andrew McCammon, General- Melissa R. Landon, Rommie E. Amaro, Riccardo Baron, Schnabel, S. Xu, R. C. Finkel, K. J. Kim and K. Marti, ized gradient-augmented harmonic Fourier beads method Chi Ho Ngan, David Ozonoff, J. Andrew McCammon and 3He, 20,21,22Ne, 14C, 10Be, 26Al, and 36Cl in magnetic fractions of with multiple atomic and/or center-of-mass positional re- Sandor Vajda, Novel druggable hot spots in avian influenza cosmic dust from Greenland and Antarctica, Meteorit. Plan- straints, J. Chem. Phys, 127, 124901/1-124901/12 (2007). neuraminidase H5N1 revealed by computational solvent et. Sci, 42, 1831-1840 (2007). Benzhuo Lu, Y. C. Zhou, Gary A. Huber, Stephen D. mapping of a reduced and representative receptor ensemble, K. V. Ponganis and K. Marti, Nitrogen components in Bond, Michael J. Holst and J. Andrew McCammon, Electro- Chem. Biol. Drug Des, 71, 106-116 (2008). IAB/IIICD iron meteorites, Meteorit. Planet. Sci, 42, 331- diffusion: A continuum modeling framework for biomolecu- Benzhuo Lu and J. Andrew McCammon, Molecular sur- 346 (2007). lar systems with realistic spatiotemporal resolution, J. Chem. face-free continuum model for electrodiffusion processes, Phys, 127, 135102/1-135102/17 (2007). Chem. Phys. Lett, 451, 282-286 (2008). MCCAMMON, J. ANDREW (b.1947) Joseph E. Mayer Professor of Theoretical Chemistry. A.B, 1969, Pomona College; A.M, 1970, Harvard University; Ph.D, 1976, Harvard University. NSF Postdoctoral Fellowship, 1976-1977, Harvard University; NIH Postdoctoral Fel- lowship, 1977-1978, Harvard University. Biophysics/ Biophysical Chemistry; Chemical Physics. We use theoretical and computational methods to study biological molecules. Most of our work uses methods from statistical mechanics. These methods range from computer simulations of molecular behavior to purely theoretical David D. L. Minh, Donald Hamelberg and J. Andrew McCammon, Accelerated entropy estimates with accelerated dynamics, J. Chem. Phys, 127, 154105/1-154105/5 (2007). David S. Cerutti, Nathan A. Baker and J. Andrew McCammon, Solvent reaction field potential inside an uncharged globular protein: A bridge between implicit and explicit solvent models?, J. Chem. Phys, 127, 155101/1-155101/12 (2007). Donald Hamelberg, Cesar Augusto F. de Oliveira and J. Andrew McCammon, Sampling of slow diffusive conformational transitions with accelerated molecular dynamics, J. Chem. Phys, 127, 155102/1-155102/9 (2007). Jennifer M. Bui and J. Andrew McCammon, Intrinsic conformational flexibility of acetylcholinesterase, Chem.-Biol. Interact, 175, 303-304 (2008). Riccardo Baron and J. Andrew McCammon, (Thermo)dynamic role of receptor flexibility, entropy, and motional correlation in protein-ligand binding, ChemPhysChem, 9, 983-988 (2008). B. Z. Lu, Y. C. Zhou, M. J. Holst and J. A. McCammon, Recent progress in numerical methods for the Poisson-Boltz- mann equation in biophysical applications, Commun. Comp. Physics, 3, 973-1009 (2008). Donald Hamelberg and J. Andrew McCammon, Dealing
CALIFORNIA, SAN DIEGO 9 with bound waters in a site: do they leave or stay?, Comput. dent Structural and Dynamical Features of Ras Proteins, Phorbas sp. Assignment of the Configurations of Phorbasides Struct. Approaches Drug Discovery, 95-110 (2008). Structure (Cambridge, MA, U. S.), 16, 885-896 (2008). A and B by Quantitative CD, J. Am. Chem. Soc, 129, 4150- Daniel Abankwa, Michael Hanzal-Bayer, Nicolas Ariotti, 4151 (2007). Sarah J. Plowman, Alemayehu A. Gorfe, Robert G. Parton, J. David Cerutti, Models for solvated biomolecular struc- Evan W. Rogers and Tadeusz F. Molinski, Highly Polar Andrew McCammon and John F. Hancock, A novel switch region regulates H-ras membrane orientation and signal out- put, EMBO J, 27, 727-735 (2008). Z. Yu, M. Holst and J. A. McCammon, High-fidelity geometric modelling for biomedicine and other applications, Finite Elements in Analysis and Design, 44, 715-723 (2008). Alemayehu A. Gorfe and J. Andrew McCammon, Similar Membrane Affinity of Mono- and Di-S-acylated Ras Mem- brane Anchors: A New Twist in the Role of Protein Lipidation, J. Am. Chem. Soc, 130, 12624-12625 (2008). Ilja V. Khavrutskii, Joachim Dzubiella and J. Andrew McCammon, Computing accurate potentials of mean force in electrolyte solutions with the generalized gradient-augmented harmonic Fourier beads method, J. Chem. Phys, 128, 044106/1-044106/13 (2008). Cesar Augusto F. de Oliveira, Donald Hamelberg and J. Andrew McCammon, Coupling Accelerated Molecular Dynamics Methods with Thermodynamic Integration Simulations, J. Chem. Theory Comput, 4, 1516-1525 (2008). Ilja V. Khavrutskii, Mikolai Fajer and J. Andrew McCam- mon, Intrinsic Free Energy of the Conformational Transition of the KcsA Signature Peptide from Conducting to Nonconducting State, J. Chem. Theory Comput, 4, 1541-1554 (2008). Mikolai Fajer, Donald Hamelberg and J. Andrew McCammon, Replica-Exchange Accelerated Molecular Dynamics (REXAMD) Applied to Thermodynamic Integration, J. Chem. Theory Comput, 4, 1565-1569 (2008). Rommie E. Amaro, Riccardo Baron and J. Andrew McCammon, An improved relaxed complex scheme for receptor flexibility in computer-aided drug design, J. Comput.tures. (D) David Minh, Free energy reconstruction from irreversible single-molecule pulling experiments. (D) Yuhui Cheng, Multiscale simulations of biochemically reacting systems. (D) MCMORRIS, TREVOR C. (b.1930) Professor. B.S, 1952, London University; M.Sc, 1955, London University; Ph.D, 1958, London University. Interuniversity Fellow, Organic Chemistry, 1958-1959, London University, Imperial College; Fellowship, Organic Chemistry, 1959- 1960, University of Western Ontario. Chemistry of steroids and other natural products; isolation, structure elucidation and synthesis of sex hormones and other biologically active substances in fungi and higher plants; illudin analogs as new anticancer drugs. TEL: (858) 534- 4178 FAX: (858) 534-4864 Email: tmcmorris@ucsd.edu Publication list has not been verified by the department. Trevor C. McMorris, Ramesh Chimmani, Mahender Gurram, Michael D. Staake and Michael J. Kelner, Synthesis and antitumor activity of amine analogs of irofulven, Bioorg. Med. Chem. Lett, 17, 6770-6772 (2007). MOLINA, MARIO J. (b.1943) Professor. Nobel Prize, 1995, University of California, Berkeley. TEL: (858) 534-1696 FAX: (858) 534-4864 Web: www-chem.ucsd.edu/research/profile.cfm?cid= C04871 Email: mjmolina@ucsd.edu Spiroisoxazolines from the Sponge Aplysina fulva, J. Nat. Prod, 70, 1191-1194 (2007). Tatyana N. Makarieva, Pavel S. Dmitrenok, Alexander M. Zakharenko, Vladimir A. Denisenko, Alla G. Guzii, Ronghua Li, Colin K. Skepper, Tadeusz F. Molinski and Valentin A. Stonik, Rhizochalins C and D from the Sponge Rhizochalina incrustata. A Rare threo-Sphingolipid and a Facile Method for Determination of the Carbonyl Position in �,�-Bifunctionalized Ketosphingolipids, J. Nat. Prod, 70, 1991-1998 (2007). Jonel P. Saludes, Sarah C. Lievens and Tadeusz F. Molinski, Occurrence of the �-Glucosidase Inhibitor 1,4-Dideoxy- 1,4-imino-D-arabinitol and Related Iminopentitols in Marine Sponges, J. Nat. Prod, 70, 436-438 (2007). Brandon I. Morinaka, Colin K. Skepper and Tadeusz F. Molinski, Ene-yne Tetrahydrofurans from the Sponge Xestospongia muta. Exploiting a Weak CD Effect for Assignment of Configuration, Org. Lett, 9, 1975-1978 (2007). Evan W. Rogers and Tadeusz F. Molinski, Asymmetric Synthesis of Diastereomeric Diaminoheptanetetraols. A Proposal for the Configuration of (+)-Zwittermicin A, Org. Lett, 9, 437-440 (2007). Brandon I. Morinaka, Makoto N. Masuno, Joseph R. Paw- lik and Tadeusz F. Molinski, Amaranzole A, a New N-Imidazolyl Steroid from Phorbas amaranthus, Org. Lett, 9, 5219- 5222 (2007). Brandon I. Morinaka and Tadeusz F. Molinski, Exciton coupling circular dichroism of an allylic N-imidazolyl group in amaranzole A, a marine natural product from Phorbas amaranthus, Chirality, 20, 1066-1070 (2008). Sepehr Dadsetan, Liudmila Zakharova, Tadeusz F. Molin- ski and Alla F. Fomina, Store-operated Ca2+ Aided Mol. Des, 22, 693-705 (2008). Publication list has not been verified by the department. Influx Causes Ca2+ Release from the Intracellular Ca2+ Y. Zhou, M. Holst and J. A. McCammon, A nonlinear elasticity model of macromolecular conformational change induced by electrostatic forces, J. Math. Analysis Applic, 340, 135-164 (2008). Lily S. Cheng, Rommie E. Amaro, Dong Xu, Wilfred W. Li, Peter W. Arzberger and J. Andrew McCammon, Ensemble-Based Virtual Screening Reveals Potential Novel Antiviral Compounds for Avian Influenza Neuraminidase, J. Med. Chem, 51, 3878-3894 (2008). Zeyun Yu, Michael J. Holst, Yuhui Cheng and J. Andrew McCammon, Feature-preserving adaptive mesh generation for molecular shape modeling and simulation, J. Mol. Graphics Modell, 26, 1370-1380 (2008). Arneh Babakhani, Alemayehu A. Gorfe, Judy E. Kim and J. Andrew McCammon, Thermodynamics of Peptide Insertion and Aggregation in a Lipid Bilayer, J. Phys. Chem. B, 112, 10528-10534 (2008). Riccardo Baron, Sergio E. Wong, Cesar A. F. de Oliveira and J. Andrew McCammon, E9-Im9 Colicin DNase-Immunity Protein Biomolecular Association in Water: A Multiple- Copy and Accelerated Molecular Dynamics Simulation Study, J. Phys. Chem. B, 112, 16802-16814 (2008). Y. C. Zhou, Benzhuo Lu, Gary A. Huber, Michael J. Holst and J. Andrew McCammon, Continuum Simulations of Acetylcholine Consumption by Acetylcholinesterase: A Poisson- Nernst-Planck Approach, J. Phys. Chem. B, 112, 270-275 (2008). Jianwei Che, Joachim Dzubiella, Bo Li and J. Andrew McCammon, Electrostatic Free Energy and Its Variations in Implicit Solvent Models, J. Phys. Chem. B, 112, 3058-3069 (2008). Rainer Volkamer, Federico San Martini, Luisa T. Molina, Dara Salcedo, Jose L. Jimenez and Mario J. Molina, A missing sink for gas-phase glyoxal in Mexico City: formation of secondary organic aerosol, Geophys. Res. Lett, 34, L19807/1- L19807/5 (2007). Katja Dzepina, Janet Arey, Linsey C. Marr, Douglas R. Worsnop, Dara Salcedo, Qi Zhang, Timothy B. Onasch, Lui- sa T. Molina, Mario J. Molina and Jose L. Jimenez, Detection of particle-phase polycyclic aromatic hydrocarbons in Mexico City using an aerosol mass spectrometer, Int. J. Mass Spectrom, 263, 152-170 (2007). Andrey V. Ivanov, Sofia Trakhtenberg, Allan K. Bertram, Yulii M. Gershenzon and Mario J. Molina, OH, HO2, and Ozone Gaseous Diffusion Coefficients, J. Phys. Chem. A, 111, 1632-1637 (2007). V. Faye McNeill, Franz M. Geiger, Thomas Loerting, Bernhardt L. Trout, Luisa T. Molina and Mario J. Molina, Interaction of Hydrogen Chloride with Ice Surfaces: The Effects of Grain Size, Surface Roughness, and Surface Disor- der, J. Phys. Chem. A, 111, 6274-6284 (2007). Ryan C. Moffet, Yury Desyaterik, Rebecca J. Hopkins, Alexei V. Tivanski, Mary K. Gilles, Y. Wang, V. Shutthan- andan, Luisa T. Molina, Rodrigo Gonzalez Abraham, Kirsten S. Johnson, Violeta Mugica, Mario J. Molina, Alexander Laskin and Kimberly A. Prather, Characterization of Aerosols Containing Zn, Pb, and Cl from an Industrial Region of Mexico City, Environ. Sci. Technol, 42, 7091-7097 (2008). Jong-Ho Park, Andrey V. Ivanov and Mario J. Molina, Effect of Relative Humidity on OH Uptake by Surfaces of Atmospheric Importance, J. Phys. Chem. A, 112, 6968-6977 Channels That Is Required for T Cell Activation, J. Biol. Chem, 283, 12512- 12519 (2008). Colin K. Skepper and Tadeusz F. Molinski, Long-Chain 2H-Azirines with Heterogeneous Terminal Halogenation from the Marine Sponge Dysidea fragilis, J. Org. Chem, 73, 2592-2597 (2008). John B. MacMillan, Xiong-Zhou Guang, Colin K. Skepper and Tadeusz F. Molinski, Phorbasides A-E, Cytotoxic Chlorocyclopropane Macrolide Glycosides from the Marine Sponge Phorbas sp. CD Determination of C-Methyl Sugar Configurations, J. Org. Chem, 73, 3699-3706 (2008). Colin K. Skepper, Doralyn S. Dalisay and Tadeusz F. Mo- linski, Synthesis and Antifungal Activity of (-)-(Z)-Dysidazirine, Org. Lett, 10, 5269-5271 (2008). Evan W. Rogers, Zwittermicin A: Determination of its complete configuration and total synthesis of its enantiomer. (D) Makoto N. Masuno, Synthesis and biological evaluation of brominated marine natural product analogs that modulate teh skeletal muscle FKBP12/calcium channel complex. (D) MÜLLER, ULRICH F. (b.1969) Assistant Professor. Ph.D, 2000, Darmstadt University of Technology. Postdoctoral Fellow, 2001-2006, Whitehead Institute. Biochemistry. TEL: (858) 534-6823 FAX: (858) 822-4442 Web: www-chem.ucsd.edu/Faculty/bios/muller.html Email: ufmuller@ucsd.edu No publication information submitted for this edition. David D. L. Minh and J. Andrew McCammon, Springs and Speeds in Free Energy Reconstruction from Irreversible Single-Molecule Pulling Experiments, J. Phys. Chem. B, 112, 5892-5897 (2008). Z. Yu, M. Holst, T. Hayashi, C. L. Bajaj, M. H. Ellisman, J. A. McCammon and M. Hoshijima, Three-dimensional geometric modeling of membrane-bound organelles in ventricular myocytes: Bridging the gap between microscopic imaging and mathematical simulation, J. Struct. Biol, 164, 304-313 (2008). Shamila S. Gunatilleke, Cesar Augusto F. Oliveira, J. Andrew McCammon and Amy M. Barrios, Inhibition of cathepsin B by Au(I) complexes: a kinetic and computational study, JBIC, J. Biol. Inorg. Chem, 13, 555-561 (2008). Cameron Mura and J. Andrew McCammon, Molecular dynamics of a �B DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation, Nucl. Acids Res, 36, 4941-4955 (2008). Hai-Long Wang, Xiaolin Cheng, Palmer Taylor, J. Andrew McCammon and Steven M. Sine, Control of cation permeation through the nicotinic receptor channel, PLoS Comput. Biol, 4, No pp. given (2008). (2008). MOLINSKI, TADEUSZ F. (b.1957) Professor. B.Sc, 1978, Monash University; Ph.D, 1985, Australian National University. Postdoctoral Fellow, 1984-1987, Scripps Institution of Oceanography; Postdoctoral Fellow, 1987-1988, University of Utah; Visiting Chemist, 1988, UC San Diego; Assistant Professor, 1989-1995, UC Davis; Associate Professor, 1995-1997, UC Davis; Professor, 1997-2005, UC Davis. Natural Products Chemistry; Organic Chemistry. Structure and synthesis of marine natural products. Chiroptical methods in organic stereochemistry. NMR. ‘Nanomole-scale’ natural products. Biological chemistry. Discovery of therapeutics for AIDS-related disease and cancer. TEL: (858) 534-7115 FAX: (858) 822-0386 Web: www-chem.ucsd.edu/Faculty/bios/molinski.html Email: tmolinski@ucsd.edu Tianzhong Yang, Eric Esteve, Isaac N. Pessah, Tadeusz F. Molinski, Paul D. Allen and Jose R. Lopez, Elevated resting [Ca NAKAGAWA, TERUNAGA Assistant Professor. M.D, 1996, University of Tokyo; Ph.D, 2000, University of Tokyo. HFSP long term fellow, 2000-2001, MGH, Harvard Medical School; HFSP long term fellow, 2001- 2003, MIT; HHMI post-doctoral fellow, 2003-2005, MIT. Biochemistry; Neuroscience. Structure and func- tion of glutamate receptors. TEL: (858) 534-2974 FAX: (858) 534-7042 K. Takao, K. Okamoto, T. Nakagawa, R. L. Neve, T. Nagai, A. Miyawaki, T. Hashikawa, S. Kobayashi and Y. Hayashi, Visualization of synaptic Ca2+ /calmodulin-dependent protein kinase II activity in living neurons, J. Neurosci, 25, 3107-3112 (2005). T. Nakagawa, Y. Cheng, E. Ramm, M. Sheng and T. Walz, Structure and different conformational states of native AMPA receptor complexes, Nature, 433, 545-549 (2005). X. Chen, L. Vinade, R. D. Leapman, J. D. Petersen, T. Nakagawa, T. M. Phillips, M. Sheng and T. S. Reese, Mass of the post synaptic density and enumeration of three key molecules, PNAS, 102, 11551-11556 (2005). 2+]i Chia-en A. Chang, William A. McLaughlin, Riccardo Baron, Wei Wang and J. Andrew McCammon, Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association, Proc. Natl. Acad. Sci. U. S. A, 105, 7456-7461 (2008). R. Amaro, A. Schnaufer, W. Hol, K. Stuart and J. A. McCammon, Discovery of drug-like inhibitors of an essential RNA editing ligase in Trypanosoma brucei, Proc. Natl. in myotubes expressing malignant hyperthermia RyR1 cDNAs is partially restored by modulation of passive calcium leak from the SR, Am. J. Physiol, 292, C1591-C1598 (2007). Anne Schuetz, Jochen Junker, Andrei Leonov, Oliver F. Lange, Tadeusz F. Molinski and Christian Griesinger, Stereochemistry of sagittamide A from residual dipolar coupling enhanced NMR, J. Am. Chem. Soc, 129, 15114-15115 (2007). T. Nakagawa, Y. Cheng, M. Sheng and T. Walz, Three-dimensional structure of an AMPA receptor without associated stargazin/TARP proteins, Biol. Chem, 387, 179-187 (2006). T. Nakagawa, M. I. Feliu-Mojer, P. Wulf, C. Lois, M. Sheng and C. C. Hoogenraad, Generation of lentiviral transgenic rats expressing glutamate receptor binding protein 1 (GRIP1) in brain, spinal cord, and testis, J. Neurosci. Methods, 152, 1-9 (2006). D. Cheng, C. C. Hoogenraad, J. Rush, E. Ramm, M. A. Acad. Sci. USA, 106, 17278–17283 (2008). Colin K. Skepper, John B. MacMillan, Guang-Xiong Schlager, D. M. Duong, P. Xu, S. R. Wijayawardana, J. Han- Alemayehu A. Gorfe, Barry J. Grant and J. Andrew Zhou, Makoto N. Masuno and Tadeusz F. Molinski, felt, T. Nakagawa, M. Sheng and J. Peng, Relative and abso- McCammon, Mapping the Nucleotide and Isoform-Depen- Chlorocyclopropane Macrolides from the Marine Sponge lute quantification of postsynaptic density proteome isolated
Page 1 and 2: CALIFORNIA, SAN DIEGO 1 UNIVERSITY
Page 3 and 4: CALIFORNIA, SAN DIEGO 3 Synthesis i
Page 5 and 6: CALIFORNIA, SAN DIEGO 5 Email: pgho
Page 7: CALIFORNIA, SAN DIEGO 7 Cynthia B.
Page 11 and 12: CALIFORNIA, SAN DIEGO 11 phages by
Page 13 and 14: CALIFORNIA, SAN DIEGO 13 Rheingold,
Page 15 and 16: CALIFORNIA, SAN DIEGO 15 Nicholas J
Page 17 and 18: CALIFORNIA, SAN DIEGO 17 Web: www-c

UNIVERSITY OF CALIFORNIA, SAN DIEGO

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?