Making the most of phylogeny - OPUS - Universität Würzburg

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Kumulative Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg Making the most of phylogeny: Unique adaptations in tardigrades and 216374 internal transcribed spacer 2 structures vorgelegt von Frank Förster aus Hohenmölsen Würzburg, 2010
Page 1: Making the most of phylogeny: Uniqu
Page 5: Acknowledgements I would like to ex
Page 8 and 9: Contents Contents 5. Transcriptome
Page 11 and 12: Acronyms 15-LOX-DICE 15-lipoxygenas
Page 13: Part I. Introduction 1
Page 16 and 17: The phylum Tardigrada Part I. Intro
Page 18 and 19: The phylum Tardigrada Part I. Intro
Page 20 and 21: Internal transcribed spacer 2 Part
Page 22 and 23: Internal transcribed spacer 2 Part
Page 25: Chapter 1. Material 1.1. Hardware r
Page 28 and 29: Bioinformatical methods Part II. Ma
Page 30 and 31: Bioinformatical methods Part II. Ma
Page 32 and 33: Biochemical methods Part II. Materi
Page 35 and 36: Chapter 3. Tardigrade workbench: co
Page 37 and 38: BMC Genomics 2009, 10:469 http://ww
Page 45: BMC Genomics 2009, 10:469 http://ww
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Mali et al. BMC Genomics 2010, 11:1
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Transcriptome analyzed at different
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Introduction Tardigrades represent
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examine which subgroups occur in th
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contrast, other elements such as th
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Specific encoded protein families a
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dihydrolipoamide acetyltransferase
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anch off to terpenoid biosynthesis
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and domain analysis did not identif
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that these are only those which can
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instance regarding storage carbohyd
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UniProtKB/TrEMBL- and NR-database.
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We conducted systematic sequence to
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6. Clegg, J. S. (2005). Desiccation
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stress tolerance in mutants lacking
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74. Orr-Weaver, T. L., Szostak, J.
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Figure Captions Fig. 1. Sequence si
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Fig. 5. Bmh2 stress pathway is cons
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Tables Table I. Regulatory Motifs f
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Table IIb. Important COGs/KOGs iden
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Table IIc. Subset of important COGs
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ec:3.1.2.22 palmitoyl[protein] hydr
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monooxygenase Retinol metabolism Re
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40 kDa DnaJ/Hsp40 (regulated respon
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Proteomic Analysis of Tardigrades:
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Figure 3. Analysis of protein degra
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Figure 6. Comparison of database pe
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Table 2. Identified proteins with a
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Table 2. Cont. Sequence coverage No
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Table 2. Cont. No. of NCBInr Tardig
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Table 2. Cont. No. of NCBInr Tardig
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Table 3. Cont. Spot no. Accession n
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Table 3. Cont. Spot no. Accession n
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Evaluation of Heat Shock Proteins b
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quality MS/MS spectra against the p
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IEF conditions. First dimension iso
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22. Mommsen TP, Walsh PJ (1988) Vit
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Cell Stress and Chaperones DOI 10.1
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Stress-gene expression in tardigrad
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Chapter 8. Tardigrade bioinformatic
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Abstract Tardigrades are an indepen
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our recent EST data, tardigrades av
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and their dynamics, however, we nee
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Philippi, N., Walter, D., Schlatter
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Table 2: Typical examples of conser
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Figure 2: Concerted changes in tard
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Published online 17 November 2009 N
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Table 1. Taxonomic breakdown of pre
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Database revealed a stereotypical I
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Keller et al. Biology Direct 2010,
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Chapter 11. ITS2 data corroborate a
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BMC Evolutionary Biology 2008, 8:21
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Distinguishing species in Paramacro
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Table 2: Compensatory base changes.
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Supplement Material Distinguishing
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222
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Part IV. General Discussion and Con
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Summary The phylum Tardigrada consi
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Zusammenfassung Der Tierstamm Tardi
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Bibliography Ewing, B., Hillier, L.
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Bibliography Bibliography Coleman,
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Bibliography Bibliography Grillo, G
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Bibliography Bibliography Keller, A
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Bibliography Bibliography Mathews,
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Bibliography Bibliography Reuner, A
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Bibliography Bibliography Tatusov,
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Contributions Chapter 3 ‘Tardigra
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Contributions Chapter 8 ‘Tardigra
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Curriculum Vitae Fundamental inform
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List of Publications Förster, F. *
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Erklärung Hiermit erkläre ich ehr
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Making the most of phylogeny - OPUS - Universität Würzburg

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