Making the most of phylogeny - OPUS - Universität Würzburg

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Chapter 3. Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades –published in BMC Genomics– 23
Page 1: Making the most of phylogeny: Uniqu
Page 4 and 5: Eingereicht am: . . . . . . . . . .
Page 7 and 8: Contents Acronyms xi I. Introductio
Page 9: List of Figures Contents List of Fi
Page 12 and 13: Acronyms Acronyms xii ITS2 internal
Page 15 and 16: Part I. Introduction Thesis outline
Page 17 and 18: Part I. Introduction The phylum Tar
Page 19 and 20: Part I. Introduction Internal trans
Page 21 and 22: Part I. Introduction Internal trans
Page 23: Part II. Material and Methods 11
Page 27 and 28: Chapter 2. Methods 2.1. Bioinformat
Page 29 and 30: Part II. Material and Methods Bioin
Page 31 and 32: Part II. Material and Methods Bioin
Page 33: Part III. Results 21
Page 37 and 38: BMC Genomics 2009, 10:469 http://ww
Page 45: BMC Genomics 2009, 10:469 http://ww
Page 48 and 49: Mali et al. BMC Genomics 2010, 11:1
Page 60 and 61: Transcriptome analyzed at different
Page 62 and 63: Introduction Tardigrades represent
Page 64 and 65: examine which subgroups occur in th
Page 66 and 67: contrast, other elements such as th
Page 68 and 69: Specific encoded protein families a
Page 70 and 71: dihydrolipoamide acetyltransferase
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6. Clegg, J. S. (2005). Desiccation
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stress tolerance in mutants lacking
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74. Orr-Weaver, T. L., Szostak, J.
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Figure Captions Fig. 1. Sequence si
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Fig. 5. Bmh2 stress pathway is cons
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Tables Table I. Regulatory Motifs f
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Table IIb. Important COGs/KOGs iden
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Table IIc. Subset of important COGs
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ec:3.1.2.22 palmitoyl[protein] hydr
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monooxygenase Retinol metabolism Re
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40 kDa DnaJ/Hsp40 (regulated respon
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Proteomic Analysis of Tardigrades:
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Figure 3. Analysis of protein degra
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Figure 6. Comparison of database pe
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Table 2. Identified proteins with a
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Table 2. Cont. Sequence coverage No
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Table 2. Cont. No. of NCBInr Tardig
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Table 2. Cont. No. of NCBInr Tardig
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Table 3. Cont. Spot no. Accession n
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Table 3. Cont. Spot no. Accession n
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Evaluation of Heat Shock Proteins b
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quality MS/MS spectra against the p
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IEF conditions. First dimension iso
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22. Mommsen TP, Walsh PJ (1988) Vit
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Cell Stress and Chaperones DOI 10.1
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Stress-gene expression in tardigrad
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Chapter 8. Tardigrade bioinformatic
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Abstract Tardigrades are an indepen
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our recent EST data, tardigrades av
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and their dynamics, however, we nee
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Philippi, N., Walter, D., Schlatter
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Table 2: Typical examples of conser
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Figure 2: Concerted changes in tard
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Published online 17 November 2009 N
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Table 1. Taxonomic breakdown of pre
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Database revealed a stereotypical I
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Keller et al. Biology Direct 2010,
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Chapter 11. ITS2 data corroborate a
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BMC Evolutionary Biology 2008, 8:21
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Distinguishing species in Paramacro
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Table 2: Compensatory base changes.
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Supplement Material Distinguishing
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222
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Part IV. General Discussion and Con
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Summary The phylum Tardigrada consi
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Zusammenfassung Der Tierstamm Tardi
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Bibliography Ewing, B., Hillier, L.
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Bibliography Bibliography Coleman,
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Bibliography Bibliography Grillo, G
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Bibliography Bibliography Keller, A
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Bibliography Bibliography Mathews,
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Bibliography Bibliography Reuner, A
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Bibliography Bibliography Tatusov,
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Contributions Chapter 3 ‘Tardigra
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Contributions Chapter 8 ‘Tardigra
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Curriculum Vitae Fundamental inform
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List of Publications Förster, F. *
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Erklärung Hiermit erkläre ich ehr
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Making the most of phylogeny - OPUS - Universität Würzburg

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