CLUSTALX Colouring Scheme - EMBL
CLUSTALX Colouring Scheme - EMBL
CLUSTALX Colouring Scheme - EMBL
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<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
• Only one of many possible colouring schemes<br />
• Good at highlighting variation in conservation<br />
between<br />
• Designed for red/green colour-blindness<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Amino acids with similar properties drawn with the<br />
same colour<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Amino acids with similar properties drawn with the<br />
same colour<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
e.g. basic residues arginine (R) and lysine (K)<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Residues only coloured...<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Residues only coloured...<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
... if some proportion of residues in<br />
the column have the same property<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Residues only coloured...<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
... if some proportion of residues in<br />
the column have the same property<br />
e.g. lysine (K) in columns with:<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Residues only coloured...<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
... if some proportion of residues in<br />
the column have the same property<br />
e.g. lysine (K) in columns with:<br />
only "a few" other basic residues (uncoloured)<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Residues only coloured...<br />
extract from an alignment of p53 proteins<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
... if some proportion of residues in<br />
the column have the same property<br />
e.g. lysine (K) in columns with:<br />
only "a few" other basic residues (uncoloured)<br />
"many" other basic residues (coloured)<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
Polar: N T S Q<br />
Acidic: D E<br />
Hydrophobic:<br />
L V I M<br />
F W A C<br />
Basic: K R Secondary-structure breaking: G P<br />
(<strong>CLUSTALX</strong> help file fully describes the default colouring rules)<br />
Monday, 12 March 2012<br />
<strong>CLUSTALX</strong> <strong>Colouring</strong> <strong>Scheme</strong><br />
Large Aromatic Polar: H Y<br />
Aidan Budd, <strong>EMBL</strong> Heidelberg
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