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Instructions for the ICDD PDF-4+ and Sieve+ Software

Instructions for the ICDD PDF-4+ and Sieve+ Software

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<strong>Instructions</strong> <strong>for</strong> <strong>the</strong> <strong>ICDD</strong> <strong>PDF</strong>-<strong>4+</strong> <strong>and</strong> <strong>Sieve+</strong> <strong>Software</strong><br />

Contents<br />

Searching <strong>the</strong> Database .............................................................................................................. 2<br />

Comparing experimental data against <strong>the</strong> <strong>PDF</strong>-<strong>4+</strong> database using SIeve+ ............................... 4<br />

Data preparation ....................................................................................................................... 4<br />

Starting SIeve+ <strong>and</strong> loading your data ...................................................................................... 5<br />

Filtering your results ................................................................................................................. 7<br />

Multi-phase samples .................................................................................................................. 8<br />

Publishing your final analyses ................................................................................................... 9<br />

This software is only licensed <strong>for</strong> use on one computer. It is not available <strong>for</strong><br />

users to install on o<strong>the</strong>r computers.<br />

Last updated: NRM, 16/12/2011


Searching <strong>the</strong> Database<br />

The database can be accessed by clicking on <strong>the</strong> ‘<strong>PDF</strong>-<strong>4+</strong> 2011’ icon on <strong>the</strong><br />

desktop of <strong>the</strong> computer.<br />

There are a multitude of search criteria – I would encourage you to play<br />

around <strong>and</strong> see what things do. As a brief summary, you can search by <strong>the</strong><br />

following general criteria:<br />

Database (<strong>the</strong>re are actually several included)<br />

Ambient or non-ambient temperature/pressure<br />

Quality Mark<br />

Subclass (e.g. cements, ceramics…)<br />

Elements (using Boolean logic or Yes/No/Maybe)<br />

Formula, composition & number of elements<br />

Name (compound, common, mineral)<br />

Zeolite or Mineral Classification<br />

References (author, journal, title, etc.)<br />

Structures (symmetry, space group, unit cell dimensions,<br />

(non)centrosymmetry, atomic environment (e.g. tetrahedral, etc.))<br />

Density<br />

Melting point<br />

I/Ic (<strong>for</strong> RIR method of quantitative phase analysis)<br />

Organic functional groups…<br />

To filter through <strong>the</strong> database:<br />

1. Go to <strong>the</strong> main ‘Search’ window (move <strong>the</strong> SIeve+ plus window if<br />

necessary).<br />

2. Choose your filtering criteria – a good starting point might be to select<br />

those elements present in your sample. To do this:


a. Select ei<strong>the</strong>r <strong>the</strong> Boolean or Yes/No/Maybe tab; I prefer <strong>the</strong><br />

latter, so we’ll do that here.<br />

b. Click Set Unselected to ‘No’ – this will deselect all elements<br />

c. Click an element to add it to <strong>the</strong> ‘Maybe’ list (i.e. this element<br />

may or may not be in <strong>the</strong> phases in your sample). Clicking it<br />

again will add it to <strong>the</strong> ‘Yes’ list (i.e. this element must be in all <strong>the</strong><br />

phases in <strong>the</strong> sample). A third click will return it to <strong>the</strong> ‘No’ list.<br />

d. Repeat <strong>for</strong> all elements as appropriate.<br />

3. Repeat <strong>for</strong> o<strong>the</strong>r search criteria if <strong>and</strong> where appropriate.<br />

4. Once you are happy with <strong>the</strong> search criteria, click Search at <strong>the</strong><br />

bottom of <strong>the</strong> ‘Search’ window. A ‘Results’ list will appear in a new<br />

window.


Comparing experimental data against <strong>the</strong> <strong>PDF</strong>-<strong>4+</strong> database<br />

using SIeve+<br />

This is <strong>the</strong> analogous process to that we can per<strong>for</strong>m in <strong>the</strong> STOE WinX POW<br />

software’s Search/Match program to access <strong>the</strong> 2004 edition of <strong>the</strong> <strong>PDF</strong>-2<br />

database. However, <strong>the</strong> SIeve+ software that can access <strong>the</strong> 2011 edition is<br />

much more powerful, <strong>and</strong> obviously has access to a much larger, more up-<br />

to-date database. SIeve+ is built in to <strong>the</strong> database software, <strong>and</strong> is<br />

accessed from within it.<br />

Data preparation<br />

In order to load your experimental data in to <strong>the</strong> SIeve+ software, it must first<br />

be in one of <strong>the</strong> following data <strong>for</strong>mats:<br />

- Sietronics *.cpi (as output by <strong>the</strong> Siemens D500 <strong>and</strong> Philips PW1825)<br />

- *.xyd (<strong>for</strong> all o<strong>the</strong>r instruments)<br />

To convert your data in to *.xyd <strong>for</strong>mat, follow <strong>the</strong>se steps:<br />

For data collected on <strong>the</strong> Siemens D5000:<br />

1. Open WinX POW<br />

2. Go to Raw Data/Raw Data H<strong>and</strong>ling<br />

3. Go to File/Import<br />

4. Change to ‘Files of Type’ = Diffrac Raw Files<br />

5. Select your Siemens *.raw file<br />

6. Save, WITH A DIFFERENT FILE NAME, as a STOE *.raw file<br />

7. Change <strong>the</strong> Wavelength to Cobalt.<br />

8. Click File/Save As, <strong>and</strong> overwrite <strong>the</strong> STOE *.raw file.<br />

9. Click File/Export, <strong>and</strong> select <strong>the</strong> *.xyd file <strong>for</strong>mat option.<br />

Note: it may be appropriate to have 1 folder <strong>for</strong> your raw data, <strong>and</strong> 1 <strong>for</strong> your<br />

imported data – o<strong>the</strong>rwise things will get pretty complicated!


For data collected on <strong>the</strong> STOE Image Plate:<br />

1. Go to Raw Data/Raw Data H<strong>and</strong>ling<br />

2. Go to File/Open, <strong>and</strong> select your file<br />

3. Click Ranges/Add Ranges – add ranges 2 <strong>and</strong> above to range 1<br />

4. Click Ranges/Extract Ranges – extract range 1, to a file with <strong>for</strong>mat<br />

.ra1<br />

5. Click File/Export, <strong>and</strong> select <strong>the</strong> *.xyd file <strong>for</strong>mat option<br />

For data collected on <strong>the</strong> STOE PSD systems:<br />

1. Go to Raw Data/Raw Data H<strong>and</strong>ling<br />

2. Go to File/Open, <strong>and</strong> select your file<br />

3. Click File/Export, <strong>and</strong> select <strong>the</strong> *.xyd file <strong>for</strong>mat option<br />

You can also import data in GSAS <strong>for</strong>mat by specifying <strong>the</strong> start <strong>and</strong> stop<br />

angles, step size, <strong>the</strong> number of data points per line, <strong>the</strong> line number where<br />

data start, <strong>and</strong> <strong>the</strong> wavelength.<br />

Starting SIeve+ <strong>and</strong> loading your data<br />

1. Clicking on <strong>the</strong> ‘<strong>PDF</strong>-<strong>4+</strong> 2011’ icon on <strong>the</strong> desktop of <strong>the</strong> computer.<br />

2. At <strong>the</strong> top of <strong>the</strong> screen, Click Edit <strong>and</strong> <strong>the</strong>n Preferences<br />

3. In <strong>the</strong> <strong>PDF</strong> Card tab, ensure that <strong>the</strong> ‘Wavelength’ matches that of your<br />

experiment.<br />

4. Click on <strong>the</strong> Simulated Profile tab <strong>and</strong> make sure that again <strong>the</strong> Type<br />

<strong>and</strong> Anode match your experiment (i.e. Type = Ka1 or Ka1+2 <strong>and</strong><br />

Anode = Co, Cu or Mo as appropriate).<br />

5. Click OK.<br />

6. At <strong>the</strong> top of <strong>the</strong> screen, click Tools, <strong>and</strong> <strong>the</strong>n SIeve+<br />

7. Choose File, <strong>the</strong>n Import Session <strong>and</strong> From Experimental Data<br />

8. Change ‘Files of Type’ to match your Sietronics (*.cpi) filetype or All<br />

Files to see your *.xyd file.


9. Ano<strong>the</strong>r window appears! Select <strong>the</strong> appropriate wavelength <strong>for</strong> your<br />

data<br />

10. Click Show Graph. Make sure that <strong>the</strong> graph matches what you<br />

actually did (correct 2θ range etc.)<br />

11. Click Process Data<br />

12. Ano<strong>the</strong>r window opens! Here you can remove <strong>the</strong> background,<br />

smooth <strong>the</strong> data, <strong>and</strong> remove Ka2 peaks. So far, I have found using<br />

<strong>the</strong> default options OK, though those with significant amorphous (e.g.<br />

glassy) components may need to be more careful: press Remove, <strong>the</strong>n<br />

Smooth<br />

13. If your data were collected on <strong>the</strong> PW1825, D500 or D5000s, press Strip<br />

K2. If <strong>the</strong> data were collected on <strong>the</strong> STOEs, instead press Skip><br />

14. You should notice that <strong>the</strong> Plot Preview in <strong>the</strong> Import screen has<br />

updated with tick marks indicating your peak positions. SIeve+ will use<br />

<strong>the</strong>se tick marks to try to identify what phase(s) are present in your<br />

sample. If you’re happy with <strong>the</strong> tick marks chosen, press Accept<br />

Peaks. If not, repeat <strong>the</strong> process or use <strong>the</strong> Manual Peak Selection<br />

controls to add or remove peaks.<br />

15. Press Import<br />

16. Press Don’t Apply Filter <strong>and</strong> wait while <strong>the</strong> software searches <strong>for</strong><br />

matches<br />

A list of results appears, ranking <strong>the</strong> database entries in <strong>the</strong> order in which<br />

<strong>the</strong>y most closely resemble your data by some ‘Goodness of Match’ score.<br />

This does NOT mean that <strong>the</strong> top result is definitely a match <strong>for</strong> your sample –<br />

just its XRD pattern most closely matches your experimental data. The<br />

chemistry should match what is reasonable or expected <strong>for</strong> your sample!<br />

Double-clicking any entry in <strong>the</strong> list will display <strong>the</strong> <strong>PDF</strong> database card <strong>for</strong> that<br />

entry.


Filtering your results<br />

Now that you have a list of results, you may wish to filter <strong>the</strong>m so that you only<br />

have those listed which are appropriate <strong>for</strong> your sample!<br />

To do this, you will first need to prepare a filter:<br />

5. Go to <strong>the</strong> main ‘Search’ window (move <strong>the</strong> SIeve+ plus window if<br />

necessary, but don’t close it)<br />

6. Choose your filtering criteria – <strong>the</strong>re are loads, divided up in to various<br />

subtabs – ‘Subfiles/Database Filters’, ‘Periodic Table’ <strong>and</strong> so on. A<br />

good starting point might be to select those elements present in your<br />

sample. To do this:<br />

a. Select ei<strong>the</strong>r <strong>the</strong> Boolean or Yes/No/Maybe tab; I prefer <strong>the</strong><br />

latter, so we’ll do that here.<br />

b. Click Set Unselected to ‘No’ – this will deselect all elements<br />

c. Click an element to add it to <strong>the</strong> ‘Maybe’ list (i.e. this element<br />

may or may not be in <strong>the</strong> phases in your sample). Clicking it<br />

again will add it to <strong>the</strong> ‘Yes’ list (i.e. this element must be in all <strong>the</strong><br />

phases in <strong>the</strong> sample). A third click will return it to <strong>the</strong> ‘No’ list.<br />

d. Repeat <strong>for</strong> all elements as appropriate.<br />

7. Repeat <strong>for</strong> o<strong>the</strong>r search criteria if <strong>and</strong> where appropriate.<br />

8. Once you are happy with <strong>the</strong> search criteria, click Search at <strong>the</strong><br />

bottom of <strong>the</strong> ‘Search’ window. A ‘Results’ list will appear in a new<br />

window.<br />

9. Go back to <strong>the</strong> SIeve+ window.<br />

10. In <strong>the</strong> centre of <strong>the</strong> screen, under ‘Matches Filter’, click Select<br />

11. You will see a list of all recent (i.e. in <strong>the</strong> current session) filters. Check<br />

<strong>the</strong> descriptions, <strong>and</strong> click on <strong>the</strong> appropriate filter.<br />

12. Click Apply Filter<br />

You will now have a list of possible matches to your sample, organised by <strong>the</strong><br />

‘Goodness of Match’ score – bear in mind that <strong>the</strong> software only knows what


you tell it about your specimen, <strong>and</strong> so <strong>the</strong> top answer is NOT necessarily<br />

correct – garbage in, garbage out!<br />

Multi-phase samples<br />

Follow all <strong>the</strong> instructions in <strong>the</strong> previous sections!<br />

If you have a multi-phase sample, you can <strong>the</strong>n click on <strong>the</strong> ‘h<strong>and</strong>shake’<br />

button at <strong>the</strong> top of <strong>the</strong> SIeve+ window to accept a card that you think is a<br />

good match <strong>for</strong> one of <strong>the</strong> phases in your sample. The software will <strong>the</strong>n look<br />

<strong>for</strong> <strong>the</strong> next best matching phase (assuming you have made your filter criteria<br />

quite general).<br />

Once all <strong>the</strong> peaks in <strong>the</strong> diffraction pattern have been accounted <strong>for</strong>, <strong>the</strong><br />

software may be able to use <strong>the</strong> RIR method to give an estimated of <strong>the</strong><br />

quantity of phases present – providing <strong>the</strong> cards you have selected all have<br />

an I/Ic value entered – many do not.<br />

I/Ic is <strong>the</strong> height of <strong>the</strong> strongest reflection in <strong>the</strong> pattern (<strong>the</strong> 100% reflection)<br />

expressed as a ratio to that of corundum, a-Al2O3. I/Ic is obtained by<br />

preparing a 50:50 mixture (by WEIGHT) of <strong>the</strong> phase with corundum <strong>and</strong><br />

measuring <strong>the</strong> strongest reflection from <strong>the</strong> phase <strong>and</strong> from corundum as<br />

obtained from <strong>the</strong> mixture.<br />

The RIR method is relatively easy, but can be very inaccurate. There is a<br />

tutorial about it on <strong>the</strong> <strong>ICDD</strong> website here which those considering it should<br />

probably read. You definitely need r<strong>and</strong>omly orientated powder samples,<br />

<strong>and</strong> it only gives ratios not absolute amounts. If you want a more accurate<br />

quantification, you really need to use <strong>the</strong> Rietveld method.


Publishing your final analyses<br />

Once you’ve satisfactorily finished your phase analysis, you should have a<br />

fitted graph that you want to export in to some <strong>for</strong>mat that you can take<br />

elsewhere <strong>and</strong> view as a picture or paste in to a report, etc.<br />

The best way I have found to do this within <strong>the</strong> software is...<br />

1. In <strong>the</strong> SIeve+ window, go to <strong>the</strong> Phases menu <strong>and</strong> Open Simulated<br />

Profile with Experimental Data<br />

2. In <strong>the</strong> window that appears, click Edit <strong>and</strong> <strong>the</strong>n Preferences<br />

3. In <strong>the</strong> <strong>PDF</strong> Card tab, ensure that <strong>the</strong> ‘Wavelength’ matches that of your<br />

experiment. Click on <strong>the</strong> Simulated Profile tab <strong>and</strong> make sure that<br />

again <strong>the</strong> Type <strong>and</strong> Anode match your experiment (i.e. Type = Ka1 or<br />

Ka1+2 <strong>and</strong> Anode = Co, Cu or Mo as appropriate).<br />

4. If you wish to export <strong>the</strong> selected <strong>PDF</strong> card(s) as simulated profile(s),<br />

<strong>the</strong> easiest <strong>and</strong> quickest way to broaden <strong>the</strong> simulated profile peaks to<br />

more closely match yours is to click on <strong>the</strong> Simulated Profile tab <strong>and</strong><br />

change <strong>the</strong> ‘Profile’ setting from Pseudo-Voigt to Crystallite Size <strong>and</strong><br />

change <strong>the</strong> Mean Crystallite Diameter from e.g. 25 to 250 – play<br />

around <strong>and</strong> see. This does not imply anything about <strong>the</strong> crystallite size<br />

in your specimen! Click OK.<br />

5. If you wish instead to export <strong>the</strong> selected <strong>PDF</strong> card(s) as stick traces<br />

(i.e. peaks with no width), click Plots <strong>and</strong> Add Stick Trace. Enter <strong>the</strong><br />

correct <strong>PDF</strong> Card number, <strong>and</strong> click Open. Click OK to accept <strong>the</strong><br />

default ‘Fixed Slit Intensity’ type. Finally, click Plots, Delete, <strong>and</strong> select<br />

<strong>the</strong> entry <strong>for</strong> <strong>the</strong> full simulate profile – this will be <strong>the</strong> one with <strong>the</strong> full<br />

stoichiometry, <strong>PDF</strong> card number AND comments about Experimental<br />

Intensity). Click OK <strong>and</strong> <strong>the</strong>n Delete.<br />

6. Repeat if <strong>and</strong> as appropriate <strong>for</strong> o<strong>the</strong>r <strong>PDF</strong> card(s).<br />

7. Once you are satisfied, click File, Save. Change ‘Files of Type:’ to JPEG<br />

<strong>and</strong> give a file name. This JPEG will be an image file that you can <strong>the</strong>n<br />

view or import in to Word, Powerpoint etc. as a picture file.


Hopefully I can find a more streamlined way of doing all this – but at least <strong>for</strong><br />

now, it should work!

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