Analysis and Prediction of Protein Structure - Eagle.cs.missouri.edu ...

More documents

Recommendations

Info

Structure Classification Database • SCOP (http://scop.berkeley.edu/) • CATH (http://cathwww.biochem.ucl.ac.uk/latest/inde x.html) • Dali/FSSP (http://ekhidna.biocenter.helsinki.fi/dali/start)
SCOP Classification Levels SCOP Root Class alpha Beta a+b a/b Small Protein 4-Helix Bundle ………….. TIM a/b barrel Fold Phospholipase Nuclease …………….. Superfamily Tyrosyl-DNA Phosphodiesterase …………. Family
Page 1 and 2: Analysis and Prediction of Protein
Page 3 and 4: Sequence, Structure and Function AG
Page 5 and 6: Amino Acids Hydrophilic
Page 7 and 8: Protein Secondary Structure • Det
Page 9 and 10: Beta-Sheet Anti-Parallel Parallel
Page 11 and 12: Tertiary Structure • John Kendrew
Page 13: Anfinsen’s Folding Experiment •
Page 16 and 17: Outline I. Sequence, Structure, Fun
Page 18 and 19: Wikipedia, the free encyclopedia
Page 20: Storage in Protein Data Bank Search
Page 23 and 24: J. Pevsner, 2005
Page 25 and 26: Protein Structure Classification
Page 27 and 28: Colors in the universe of protein s
Page 29 and 30: Another Fold Example: TIM betaalpha
Page 31: Fold: beta barrel http://scop.berke
Page 36 and 37: Goal of structure prediction • Ep
Page 38 and 39: 1D: Secondary Structure Prediction
Page 40 and 41: Secondary Structure Prediction Sing
Page 42 and 43: Helix formation is local THYROID ho
Page 44 and 45: . . . S D R Q G F V P A A Y V K K P
Page 46 and 47: Comments: frequency is often normal
Page 48 and 49: Useful Tools • PSI-PRED (http://b
Page 50 and 51: 2D: Contact Map Prediction 3D Struc
Page 52 and 53: Main Contact Prediction Tools Tegge
Page 56 and 57: Two Approaches •Ab Initio Structu
Page 58 and 59: Protein Energy Landscape
Page 60 and 61: Some Ab Initio Tools • David Bake
Page 62 and 63: Template Identification • Sequenc
Page 64 and 65: Classic Fold Recognition Approaches
Page 66 and 67: Classic Fold Recognition Approaches
Page 68 and 69: Query-Template Pair Machine Learnin
Page 70 and 71: Query-Template Alignment • Most f
Page 72 and 73: A. Fisher, 2005
Page 74 and 75: An PIR Alignment Example Template i
Page 76 and 77: Modeller Python Script (bioinfo.py)
Page 78 and 79: Model Evaluation • Prosa (http://
Page 82 and 83:
Protein Folding Game: FoldIt • Vi
Page 84:
Assignment (Review one paper) • Y
show all

Analysis and Prediction of Protein Structure - Eagle.cs.missouri.edu ...

Create successful ePaper yourself

Delete template?

Save as template?