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A Life with Yeast Molecular Biology - Prof. Dr. Horst Feldmann

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V.P. Skulachev and G. Semenza (Eds.)<br />

Stories of Success – Personal Recollections. XI<br />

(Comprehensive Biochemistry Vol. 46) r 2008 Elsevier B.V. All rights reserved.<br />

DOI: 10.1016/S0069-8032(08)00004-1 275<br />

Chapter 4<br />

A <strong>Life</strong> <strong>with</strong> <strong>Yeast</strong> <strong>Molecular</strong> <strong>Biology</strong><br />

HORST FELDMANN<br />

Adolf-Butenandt-Institute, Ludwig-Maximilians-University, Munich,<br />

<strong>Molecular</strong> <strong>Biology</strong>. Schillerstrasse 44, D-80336 München, Germany<br />

E-mail: horst.feldmann@med.uni-muenchen.de<br />

<strong>Horst</strong> Wilhelm Albert <strong>Feldmann</strong>


276<br />

Abstract<br />

Born 1932, I was brought up in Stettin. I was trained as an<br />

organic chemist at Cologne University, before I entered the<br />

Institute of Genetics there in 1962 to work on tRNA structure and<br />

function. From 1967 to my retirement in 1997 I worked at the<br />

Adolf-Butenandt-Institute (Munich University) on several<br />

aspects of molecular biology of the budding yeast, for example<br />

tRNA genes, Ty elements, the yeast genome project, and<br />

programmed proteolysis. I include facets of my engagement in<br />

national and international organizations.<br />

Keywords: <strong>Yeast</strong>; tRNA; Ty; <strong>Yeast</strong> genome; Programmed proteolysis; FEBS; Spetses<br />

Within the recent 3 years, several anniversaries have been<br />

celebrated – the 40th anniversaries of the European <strong>Molecular</strong><br />

<strong>Biology</strong> Organization (EMBO) and the Federation of European<br />

Biochemical Societies (FEBS) both of which were founded in 1964 –<br />

and that of the Spetses Summer Schools on <strong>Molecular</strong> and Cellular<br />

<strong>Biology</strong> in 2006. In 2005, the Cologne Institute of Genetics had<br />

organized a workshop to remember the ‘‘Early History’’ of this<br />

institution, the first of its kind in Germany opened in 1961. Finally,<br />

in 2006 many of the participants in the International <strong>Yeast</strong><br />

Sequencing Genome Project gathered in Brussels to memorize the<br />

deciphering of the first eukaryotic genome in 1996. These venues<br />

remind me that I myself by now have devoted nearly all of my<br />

scientific life to <strong>Molecular</strong> <strong>Biology</strong>, especially that of a small<br />

unicellular ‘‘model’’ organism, the yeast Saccharomyces cerevisiae.<br />

But it took my first 30 years to bring me to this attractive field.<br />

My Early Years and Education<br />

H. FELDMANN<br />

I was born in Stettin, on a date the impact of which should<br />

determine the further political development in Germany and <strong>with</strong><br />

all its consequences imprint the future of the next decades worldwide.<br />

On March 13, 1932 – my birthday – Paul von Hindenburg<br />

was re-elected Reichspräsident (German President). I keep an<br />

edition of the Frankfurter Zeitung (Frankfort News) of this day<br />

reporting on the massive and impudent election campaign, Hitler,<br />

Goebbels, and the Nazis had set up to push Hitler into the


A LIFE WITH YEAST MOLECULAR BIOLOGY 277<br />

position of Reichspräsident. This time the Nazis lost because the<br />

majority of the Germans highly respected Hindenburg and<br />

trusted that he was the one to save German unity and<br />

independence (actually, Hindenburg’s nomination had to be<br />

confirmed on April 10, 1932). But already several months later,<br />

Hindenburg lost any confidence in Heinrich Brüning, than<br />

Chancellor of the Republic, who had tried to overcome inflation<br />

and growing underemployment by emergency decree. Thus,<br />

Brüning’s demission marked the end of the Weimar Republic,<br />

and Hitler was appointed Reich Chancellor on January 30, 1933.<br />

My father, Wilhelm <strong>Feldmann</strong>, born in Siegen (Westfalia) was<br />

the eldest of five children. My grandparents run a bakery, and my<br />

father visited a technical school in Siegen to be trained as an<br />

engineer for countryside cultivation, water management as well<br />

as canal and river engineering. He found a position as a civil<br />

servant in a government facility in Stettin responsible for these<br />

affairs and married my mother, Hertha Mansen in 1931. My<br />

maternal grandfather’s family originated from Schleswig<br />

Holstein, and his genealogy is the only one in my family which I<br />

could trace back to the 17th century. As an employee of the<br />

German National Railway my grandfather Albert Mansen had<br />

been moved to Stettin, where he married Agnes Bohm, whose<br />

relatives lived in Stettin and Berlin.<br />

I still keep good reminiscences of Stettin as a wonderful town<br />

and would be able to draw a city map <strong>with</strong> street names and<br />

important buildings in German (such a map is no longer<br />

available) though I spent only 11 years of my youth there. My<br />

parents and I lived in an apartment of a tenement quarter built<br />

during the Gründerzeit and in the early years of the 20th century,<br />

in the same style as those quarters that became characteristic for<br />

Berlin and other fast growing towns around Germany. Fortunately,<br />

our domicile was located not far from the center, and my<br />

grandfather very often took me for long walks downtown<br />

explaining to me the meaning and history of buildings, monuments,<br />

and other attractive places. My favorite place was the<br />

famous ‘‘Haken-Terrasse’’ (a terrace and park named after a<br />

Stettin mayor) at the banks of Oder river surrounding a huge<br />

building that harbored the departmental administration and the<br />

shipping museum. From here, one could overlook the whole area:<br />

the harbor <strong>with</strong> boats of all kinds and steamers moored to the<br />

quays, the busy traffic on the Oder and its side arms, and, on the


278<br />

H. FELDMANN<br />

opposite banks, the free port area governed by huge cranes, docks,<br />

and shipyards. At home I transformed these impressions into<br />

drawings of ships, the essentials of which I knew from memory<br />

already at the age of four, or I constructed cranes <strong>with</strong> my metal<br />

construction set. My parents argued that <strong>with</strong> these skills and<br />

interests I would become a shipbuilding engineer.<br />

The harbor – already busy during the time when Stettin was a<br />

member of the Hanseatic league – at the end of the 19th century<br />

had developed into the most important port of the Baltic Sea and<br />

German trading place <strong>with</strong> the Scandinavian and Baltic countries.<br />

This became only possible after the strong fortifications<br />

had been torn down, so that the town could expand. New<br />

modern quarters and huge parks were created, which together<br />

<strong>with</strong> its natural lovely hinterland made Stettin a ‘‘green town,’’<br />

offering numerous possibilities for relaxing tours. During summer<br />

time, we used to undertake week-end trips to one of the many<br />

seaside resorts at the Baltic Sea, which were served by regular<br />

pleasure steamers from Stettin. Sometimes, we visited my aunt<br />

and uncle in Berlin, and so I saw the Olympics in 1936 for<br />

one day.<br />

In 1938, I entered primary school, where we started writing in<br />

Sütterlinschrift; which was changed to Latin lettering during my<br />

third year at school. But I still can read and write this Gothic type<br />

which already my parents had been taught at school. Surprisingly,<br />

it was the Nazis who introduced the change. Other of their<br />

measures turned out to be less harmless, and I was at an age to<br />

realize some of the threatening developments, such as the<br />

increasing prosecution of the Jewish population and foreigners.<br />

For our daily life, the most far-reaching effect was Hitler’s<br />

rigorous expansion policy: in September 1939 he broke the nonaggression<br />

pact and started war. Progressively, all goods and food<br />

became scarce, but the extending war also began to exert a<br />

subliminal influence on our lives as schoolboys: we were obliged to<br />

collect warm clothing or money for the Winterhilfswerk (winter<br />

relief organization), or to collect waste paper and other waste<br />

material, even gnawed bones that were used for the production of<br />

soap. We had to set up silk moth colonies and provide mulberry<br />

leaves to feed them. Though this was given the veneer of a playful<br />

competition, my parents and all the more my grand parents were<br />

alerted. When the local Hitlerjugend forced me to visit their<br />

‘‘social evenings’’ held in a dump and dreary cellar – a measure


A LIFE WITH YEAST MOLECULAR BIOLOGY 279<br />

that I hated from the very first moment – my mother succeeded<br />

that I was exempted from this dismal obligation.<br />

The consequences of the war became worse for us during 1942,<br />

the year I entered secondary school, because air raids had reached<br />

Stettin. Measures against the bomb attacks were noticeable long<br />

before. Cellars had been transformed into air raid shelters and<br />

public air bunkers had been put up in public parks. Anti-aircraft<br />

units were installed all around the town and we could follow their<br />

practice to fix air planes by spotlights during night. I vividly<br />

remember that one nice morning in September 1942 one of my<br />

classmates appeared <strong>with</strong> singed trousers telling us that their<br />

house had been bombed last night, everything had burnt down<br />

and that this was left as his sole property. The attacks increased<br />

in 1943: we had to spend nearly every night in the shelter of our<br />

house. The most frightening missiles were the air bombs: coming<br />

down, they produced a sharp whistle. One started counting to ten,<br />

and if one was still alive after, the bomb had struck elsewhere.<br />

Finally, the authorities decided to evacuate all children to the<br />

countryside. Since my father, due to his occupation, had been<br />

exempted from military service and instead had been moved to<br />

West Prussia, my mother insisted that the whole family should<br />

take up residence in Kulm, a small town at the Vistula. So we<br />

went there in autumn 1943 and after some gipsy life obtained a<br />

newly built apartment. It was a quiet and splendid time for me.<br />

I attended an inter-denominational school in Kulm, where boys<br />

and girls were co-educated together <strong>with</strong> young Germanized<br />

Poles, and found my first love, a tender girl <strong>with</strong> curled blond<br />

hair. This happy period ended abruptly in bitter cold January<br />

1945. The Russian army was on the advance and we could already<br />

hear the near-by artillery fire. The Nazis, rigorously prepared to<br />

defend Kulm began, like all around Germany, to conscript all<br />

youngsters as well as any old men to the Volkssturm (German<br />

territorial army) endowing them <strong>with</strong> bazookas. My mother’s<br />

reaction was to pack a few small suitcases. (My father, for obvious<br />

reasons, had to stay behind.) I was to carry my satchel <strong>with</strong> some<br />

‘‘important’’ belongings of my own, our silver stowed in a small<br />

suitcase in one hand and my violin given to me by my grandfather<br />

in the other hand. Where to turn? All nearby bridges across the<br />

Vistula had been conquered by the Russians and railway<br />

connections had been interrupted. Fortunately, the Vistula was<br />

completely covered <strong>with</strong> ice, so that our doctor was able to drive


280<br />

H. FELDMANN<br />

us by car across the frozen river, where in a small town further to<br />

the west we waited for the ‘‘last train’’ towards Danzig. When it<br />

arrived it was already full of refugees. By the crowd storming the<br />

wagons I was pushed under the slowly rolling train but my<br />

mother pulled me out safely, only my violin case was hit by one of<br />

the wheels and has retained a deep notch until today.<br />

From Danzig we could make our way to Stettin to meet our<br />

relatives, but as the town had been heavily bombed the city was<br />

nearly 90% destroyed, and we did not get permission to stay.<br />

Finally, my mother decided to turn northwest, to cross the Danish<br />

border and to reach Sønderborg, where my grandfather’s cousin<br />

lived. As Denmark was occupied by the German army, more than<br />

200,000 refugees from the Eastern territories had been transported<br />

to Denmark. Many like us were allowed to stay in private<br />

quarters, until in May 1945 the Germans had to surrender to the<br />

British, an event that occurred <strong>with</strong>out firing a shot.<br />

My grandparents, my mother, and I were then accommodated<br />

at the Sønderborg Masonic lodge which served as an internment<br />

camp. We lived together <strong>with</strong> some 40 people in the ceremonial<br />

hall, the walls painted black <strong>with</strong> a blue ceiling decorated <strong>with</strong><br />

stars – but no daylight. Given this mystic atmosphere, the elderly<br />

ladies used to practice occultism behind black curtains. In early<br />

1946, all German refugees were concentrated in larger camps and<br />

we were transferred to one near Sønderborg, a former large shack<br />

camp of the German marine. With some 40 people, we had to<br />

share a tiny hut heated by one cast-iron oven that was also used<br />

for cooking, no nearby showers or toilets were available. A young<br />

girl of 16 in the bed next to me died from tuberculosis. As I fell<br />

seriously ill, our family was moved to a smaller camp (the former<br />

German school in Broager), which was sort of return to more<br />

freedom. There were some 40 children who could enjoy a huge<br />

playground and go for swimming. I organized a children’s circus,<br />

staged two of Grimm’s tales and founded a harmonica ensemble.<br />

I found much leisure to do handicrafts and to read books<br />

I discovered in the attic, such as Eddington’s ‘‘Popular Astronomy,’’<br />

teaching books in algebra and geometry, physics, and<br />

chemistry. I had an opportunity to learn French and English, an<br />

elderly woman teacher taking care of me.<br />

In February 1947, my father was able to return to his parent’s<br />

house in Siegen, which however had been nearly completely<br />

destroyed during the war. We were allowed to leave Denmark and


A LIFE WITH YEAST MOLECULAR BIOLOGY 281<br />

to join him. We were fortunate to find one intact room in this<br />

house and, more importantly, an intact garden to grow all kinds<br />

of vegetables scarcely available otherwise (food ration cards were<br />

still in use). I managed to re-enter the local secondary school, and<br />

my grandfather taught me how to play the violin. My free time I<br />

spent <strong>with</strong> my friend Dieter Zimelka, who was handicapped by<br />

reduced verbal and physical capabilities due to spastic lesions,<br />

which he compensated by intelligence and will. We undertook<br />

cycle tours, collected plants for a herbarium, and were both<br />

interested in chemistry. After he had passed school <strong>with</strong> the best<br />

marks, he studied engineering at Aachen Technical University.<br />

We kept contact by correspondence and mutual visits until he<br />

died at the age of 47.<br />

In 1949, my father found a position in Düsseldorf and we moved<br />

into a new modest apartment there. Three years later, I finished<br />

school at the Max-Planck-Gymnasium in Düsseldorf and had to<br />

think about my future occupation. On the one hand, I was<br />

attracted by chemistry. During my time at school, I had been<br />

allowed to set up experiments for our lessons in physics and<br />

chemistry, and I even had performed some risky experiments at<br />

home. One day I stunned my mother, when I tried to produce<br />

bromine, which however ruined all nutrients in our kitchen:<br />

unfortunately, the bromine had crystallized in the cooling device<br />

and caused an explosion of the whole device. On the other hand, I<br />

developed a foible for architecture. From my father I had learned<br />

some skills in trigonometric techniques, civil engineering, and<br />

how to draw plans. Above all, I felt that architecture was an ideal<br />

subject for creativity. (Later, I experienced that chemistry could<br />

do the same!) Finally, it was decided that I should enrol for<br />

chemistry at Cologne University. The argument was that I could<br />

live at home and travel to Cologne every day by train; the main<br />

station was near our domicile. Unfortunately, chemistry as a<br />

subject was over-crowded. A major bottle-neck was to allocate so<br />

many newcomers (about three hundred candidates had accumulated<br />

among which were many late returnees from prisoners-ofwar<br />

camps) to a lab space to begin practical work. So I<br />

concentrated on lectures in chemistry, physics, and philosophy.<br />

Together <strong>with</strong> one of my new companions, Max-Dieter, I enrolled<br />

for mathematical courses which I followed for four terms. In my<br />

second year, I passed a test and was admitted to the first lab<br />

course starting <strong>with</strong> an endless number of inorganic analyses, for


282<br />

H. FELDMANN<br />

which we had to provide our personal equipment and all<br />

necessary chemicals ourselves, on top of the usual university<br />

charge. The good news was that once one had successfully<br />

finished a given program after passing an oral exam, there was a<br />

guarantee to take up the next course, which culminated in the<br />

analyses of an ‘‘exploded drugstore.’’ The ultimate goal – before<br />

we were admitted to the intermediate diploma – was to correctly<br />

work out the quantitative analysis of a piece of mineral <strong>with</strong>in 2<br />

days. The only unforeseen difficulty that arose for me and a few<br />

other candidates was that our assistant had overlooked that the<br />

institute was completely closed the first day (a local holiday), so<br />

that we had to find our way in and out through a window in the<br />

basement.<br />

Despite the very rigid schedule, I found time for some<br />

interesting ventures. After our third term, Max-Dieter and I<br />

participated in a vacation program across Italy organized by the<br />

Italian student association, my first ‘‘voluntary’’ trip to a foreign<br />

country. By train we traveled via Munich to Rome and continued<br />

to Naples. There our German group met <strong>with</strong> students from Italy,<br />

France, Finland, and England. In the evening we embarked on a<br />

small boat to sail to the volcanic island of Stromboli, where we<br />

were accommodated for 10 days in an open air camp near the<br />

picturesque, black shore. At this time, Stromboli was nearly<br />

empty – few inhabitants, no tourists. The painful aftermath of the<br />

big eruption 5 years earlier were still visible: destroyed and left<br />

houses, uncultivated gardens, and wild shrubs. A commemorative<br />

plaque on one of the houses documents that Roberto Rossellini<br />

spent some time on the island <strong>with</strong> Ingrid Bergman to produce his<br />

film Stromboli (1949). The most fascinating enterprise was a<br />

guided night-tour to the peak of the volcano where we enjoyed a<br />

marvellous sunrise. We continued by sailing towards Sicily<br />

touching most of the scenic Eolic islands and spent a week’s time<br />

in Messina and Taormina.<br />

In my fifth term, I was elected member of the student<br />

representatives (Cologne Student Council) and my job became<br />

to take care of ‘‘social and cultural affaires.’’ Among other<br />

activities, I was able to invite well-known literary cabarets,<br />

readings, the University of Michigan student choir, a Jamaican (!)<br />

steel band, and to arrange for an exhibition of Cologne student<br />

paintings. A most successful activity was to organize cheap bus<br />

tours to Paris. Transport plus a stay in a small hotel for 6 days


A LIFE WITH YEAST MOLECULAR BIOLOGY 283<br />

was offered for 40 (!) Deutsche Mark per person. During my time,<br />

some 20 Cologne students got a chance to participate in a meeting<br />

<strong>with</strong> French students in northern France. We were put up in a<br />

small hotel located in the dunes of the Channel, enjoyed excellent<br />

meals (<strong>with</strong> four courses!) twice a day, met for political<br />

discussions, and were invited for sight-seeing and official<br />

receptions in Lille, Calais, Boulogne-sur-mer, and Dunquerque.<br />

An incredible story happened at my time as a member of the<br />

Student Council. The university financed a secretary to help in<br />

our common office. We hired a young lady saying she had escaped<br />

from Deutsche Demokratische Republik (DDR). After a year or so<br />

she left to take a governmental post in Bonn. It turned out,<br />

however, that she was a high-ranked spy who had used her initial<br />

job as a springboard to infiltrate the Ministry of Defence in Bonn.<br />

Like many students, I regularly took a job during the vacations.<br />

I worked in my father’s office, at the central chemical laboratory<br />

of Henkel Company in Düsseldorf or the chemical laboratory of<br />

Leybold (vacuum technologies) in Cologne. Henkel at that time<br />

was developing long-chain fatty alcohols esterified to sulfonic acid<br />

as new detergents for washing powder. They kept it secret, and<br />

only much later I realized what I had been working <strong>with</strong>. Several<br />

times I volunteered at the municipal gardening bureau in Neuss,<br />

where I was responsible for designing children’s playgrounds, and<br />

in the office of an architect in Cologne. In between I earned<br />

money by designing graphical advertisement for shops, for the<br />

Cologne tram, or privately. At one of such occasions as a working<br />

student I met Hildegard Beissel, who was enrolled as a student of<br />

economics at Cologne University, and we married after my<br />

diploma in 1960. Her brother Heribert Beissel, then a young<br />

conductor, arranged for a contact <strong>with</strong> the Bonn Theatre, and<br />

together <strong>with</strong> the Bonn ballet we staged three pieces, Mozart’s<br />

Bastien and Bastienne; Negro Spirituals; and Prokofieff’s Peter<br />

and the Wolfe. The material for the simplistic scenery I built in<br />

my 9 m 2 Cologne mansard.<br />

After my intermediate diploma, I had to return to serious life in<br />

the lab and to follow the strictly regulated training as an organic<br />

chemist. At that time, the chemical institute was housed in an old<br />

hospital near the main buildings of Cologne University. Meanwhile,<br />

the area has been used to build new facilities, the new<br />

Institute of Genetics being one of the latest. During their diploma<br />

or even doctoral thesis work, the trainees had still to fully pay for


284<br />

H. FELDMANN<br />

any equipment and material. During the practical courses, bench<br />

space was limited to about 1.5 meter in width, and normally 40–50<br />

people had to share a huge laboratory. Despite this high density,<br />

there was only limited contact or communication among the<br />

fellows. Actually, everyone buried himself in his own subject,<br />

mostly not realizing what his next neighbors were engaged in.<br />

The only common activity consisted in (rather boring) two-weekly<br />

seminars, where every fellow had to report news he found in<br />

periodicals he had been assigned to. The situation improved<br />

during my thesis work: we obtained more space, communication<br />

grew more intense, and resulted in a good co-operation between<br />

the lab fellows.<br />

I had already experienced that chemistry in some respect is a<br />

dangerous subject (not to mention the sometimes stinky air in the<br />

lab), and nearly every one of my colleagues had to pass through<br />

one or the other bad experience. I remember three personal<br />

accidents from this time, which, however, ended <strong>with</strong>out too<br />

serious consequences. During our practical courses I was obliged<br />

to synthesize a mustard gas-like compound, which handled even<br />

under extreme precautions, caused a cauterization of the corneas<br />

of both my eyes; fortunately it was cured by special treatment and<br />

staying in complete darkness for 1 week. Two compounds I<br />

prepared for my thesis work invoked explosions upon gentle<br />

distillation, which ruined all glassware in the lab.<br />

My thesis work started in 1960 under the guidance of <strong>Prof</strong>essor<br />

Leonhard Birkofer, who at that time was the only organic chemist<br />

in Cologne since <strong>Prof</strong>essor Kurt Alder had deceased in 1958. His<br />

main interests concentrated on natural compounds, such as dyes of<br />

flowering plants like Petunia which he obtained from a cooperation<br />

<strong>with</strong> the institute of botany, as well as silicon-organic<br />

compounds. But the problem I had to investigate was the<br />

possibility of synthesizing asymmetric diamino acids which had<br />

never become known before. This turned out to be very tricky,<br />

because these compounds were extremely unstable. However, some<br />

of the precursors I had to prepare yielded novel N-heterocyclic<br />

compounds upon further reaction, and in the end I had collected<br />

and characterized some 20 of such derivatives [1,2]. InJune1962,<br />

I finished my PhD after having passed oral exams in three subjects,<br />

organic chemistry, physics, and physical chemistry, <strong>with</strong> the best<br />

marks, for which I was awarded a prize by our university. During<br />

this period of time, I gathered a first teaching experience as an


A LIFE WITH YEAST MOLECULAR BIOLOGY 285<br />

assistant in chemical courses for medical students and candidates<br />

for a teaching post. Usually, in those years young chemists had no<br />

problem to find a suitable job, but after a number of interviews in<br />

leading German chemical companies, I decided not to take a<br />

position in industry, rather I was attracted by the possibility to do<br />

basic research. As no free post for a research assistant was open at<br />

the chemical institute, my boss recommended to apply as a post-doc<br />

at the newly founded Institute of Genetics in Cologne. In<br />

September 1962, I was engaged as a post-doctoral fellow by<br />

Hans-Georg Zachau, who headed the department for nucleic acid<br />

research, after I had convinced Max Delbrück, appointed the first<br />

director of the institute, in an interview that I had an honest<br />

interest and a good qualification to do research in molecular<br />

biology. Undoubtedly, this was the decisive switch in my career.<br />

One has to recollect that around that time – and even for so<br />

many years to follow – no training in biochemistry, never mind<br />

molecular biology, was offered at German universities. During my<br />

studies of organic chemistry, protein chemistry was touched only<br />

peripherally, nucleic acid chemistry simply did not exist. So my<br />

first notion of this field stems from a fascinating lecture by late<br />

Fritz Cramer talking about methods of oligonucleotide synthesis,<br />

when applying for the vacant chair in Cologne. Of course it took<br />

some effort for a ‘‘beginner’’ to grasp the essentials of biochemistry,<br />

genetics, and molecular biology. But excellent books helped<br />

open this new world, for example, Biochemistry by Peter Karlson,<br />

Classical and <strong>Molecular</strong> Genetics by Carsten Bresch and Rudolf<br />

Hausmann (both from the Institute of Genetics); books on nucleic<br />

acids such as by A. Michelson or Lord Todd.<br />

Institute of Genetics and tRNA<br />

How different became life in the Institute of Genetics! While in<br />

organic chemistry there were only two departments, each employing<br />

some three assistants and the same number of technicians, the<br />

Institute of Genetics accommodated five departments, each – on<br />

average – endowed <strong>with</strong> six scientific co-workers and roughly the<br />

same number of technicians. Conceived as an inter-disciplinary<br />

research institute, Genetics was open to collaborators from<br />

different fields, such as physics, chemistry, biology, or medicine,<br />

and most remarkably, to foreign co-workers. A completely new


286<br />

H. FELDMANN<br />

experience for me was to find a perfect ‘‘infrastructure’’:<br />

secretariat, workshop, library, cleaning kitchen, etc.<br />

A completely new experience for me was team-work, the<br />

superior maxim in every department of the Institute of Genetics.<br />

People collaborated and talked to each other very openly.<br />

Contacts between people from the single departments were<br />

guaranteed by weekly seminars and colloquia. In the seminars,<br />

all researchers and doctoral fellows had to elaborate on a given<br />

topic. One of the outstanding issues in discussions at that time<br />

(1962/1963) was the Genetic Code: triple, quadruple, comma-free<br />

or not? [3]. The colloquia were covered by invited speakers. For<br />

1963 only, I have counted 68 renowned scientists from all over the<br />

world visiting the institute. When Max was around, he used to sit<br />

in the first row in order to ‘‘control’’ the speaker. If he felt<br />

something mysterious in this presentation, he turned to the<br />

audience: ‘‘Everybody got it?’’ If there was no clear-cut answer,<br />

the baffled speaker was urged: ‘‘Better say it again!’’<br />

The relaxed atmosphere of the institute became manifest<br />

through the many parties, for which Max had a foible. A most<br />

spectacular venue was the farewell party for Max on July 19,<br />

1963, when he had decided to return to CalTech at Pasadena. I<br />

have tried to document this venue by editing the original<br />

manuscript we used for the performances. In our sketch, Max<br />

was damned to be tied and boiled by the ‘‘wild Zachaus’’’ in a<br />

huge container, which we used for our large scale tRNA<br />

preparations. To mimic the boiling water, we had put some<br />

dry ice together <strong>with</strong> a little water onto the bottom. After a while<br />

Max sighed in great pain: ‘‘Can’t you at least remove the dry ice;<br />

my back is already burning?’’ Even after Max had left the<br />

institute this atmosphere was not lost, even during the ‘‘stormy<br />

time’’ the crew had to pass. Figure 1 shows Carnival decorations<br />

Rainer Thiebe and I fabricated to illustrate this phase of<br />

depression. It would, of course, be really tempting to tell<br />

more anecdotes about people and life in the institute during the<br />

first years.<br />

Clearly, the unconventional setup of the Institute of Genetics<br />

made it the birthplace for <strong>Molecular</strong> <strong>Biology</strong> in Germany. In 1962,<br />

I could engage myself in this field, experiencing and applying new<br />

techniques devoted to the analysis of transfer ribonucleic acids<br />

(tRNA), the subject Hans Zachau’s group (Figure 2) had decided<br />

to work on. My first task became what was called the ‘‘2u/3u


A LIFE WITH YEAST MOLECULAR BIOLOGY 287<br />

Fig. 1. Carnival at the Institute of Genetics in Cologne, 1964. From left to right:<br />

Commander Max Delbrück, Lieutenant Walter Harm, Vice-Commander Peter<br />

Starlinger, and Able-bodied Seaman Hans Zachau.<br />

problem’’: it had been established that for protein synthesis the<br />

amino acids are hooked onto specific tRNAs via an amino ester<br />

bond to the ribose of the A residue of the ‘‘3u-CCA-end’’ and from<br />

there are transferred to the growing peptide chain, but it<br />

remained open whether the 2u- or the 3u-OH group of the ribose<br />

was involved. In a series of experiments, using chemical and NMR<br />

(nuclear magnetic resonance) spectroscopic methods, we compared<br />

a number of synthetic amino adenosyl esters <strong>with</strong><br />

aminoacyl adenosine isolated from total tRNA that had been<br />

charged <strong>with</strong> amino acids by amnioacyl tRNA synthetases. While<br />

all synthetic compounds exhibited a ratio 30:70 for the 2u- versus<br />

the 3u-esters (probably due to acyl migration under the reaction<br />

conditions), at least 95% of the ‘‘natural’’ aminoacyl adenosine<br />

consisted of the 3u-ester. With this finding, we arrived at the<br />

conclusion that the 3u-linkage was the one active in aminoacyl<br />

tRNA [4–8]. From theoretical considerations, it had been argued<br />

that the 2u-hydroxyl of the terminal ribose should be the more<br />

reactive in the amino acylation reaction. Much later, this<br />

contradiction was solved by showing that two structurally<br />

different classes of aminoacyl tRNA synthetases do exist, class I


288<br />

H. FELDMANN<br />

Fig. 2. Zachau’s group (‘‘3rd Floor’’) at the Institute of Genetics in Cologne,<br />

1962. From top to bottom and left to right: Susanne Notz, Hans Zachau, Fritz<br />

Melchers, Dieter Dütting, <strong>Horst</strong> <strong>Feldmann</strong>, Anita Mosch, Hugo Gottschling,<br />

Gisela Schultz, Paula Prüfert, Rainer Thiebe, Wolfgang Karau, Gudrun Patzelt,<br />

and Heidi Heusinger.<br />

enzymes transferring the amino acid to the terminal 3u-hydroxyl,<br />

class II enzymes to the terminal 2u-hydroxyl prior to a rearrangement<br />

yielding the 3u-derivative, which in all cases is the active<br />

form of the charged tRNAs in protein synthesis.<br />

In 1963/1964, I became integrated into Hans Zachau’s main<br />

project, deciphering the primary structure of the major serine<br />

specific tRNAs from yeast. This subject again challenged the<br />

analytical skills of a chemist, but at the same time met my interest<br />

in molecular architecture. In fact, it was pure and hard chemistry<br />

at the beginning. We had to isolate the starting material from<br />

large quantities of brewer’s yeast. I guess during this period<br />

I myself worked up about a ton of yeast slurry I had to supply from


A LIFE WITH YEAST MOLECULAR BIOLOGY 289<br />

‘‘SESTER Kölsch’’ brewery in Cologne. Each batch (about 100 kg<br />

yeast slurry) had to be stirred <strong>with</strong> 200 liters of a phenol/buffer<br />

mixture for several days, then the aqueous solution was decanted,<br />

the soluble RNA precipitated by adding 250 liters ethanol, and<br />

harvested by sedimentation in a huge centrifuge. The raw tRNA,<br />

resembling a brownish shoe polish, was purified on a DEAE<br />

cellulose column and yielded some 30 grams of white material [9].<br />

Later, C.F. Boehringer and Soehne, Mannheim, set out to produce<br />

yeast tRNA on an industrial scale following this protocol, and we<br />

were lucky that they supplied enough of this material to us free of<br />

charge. The ensuing steps, namely the purification of the serine<br />

specific tRNA, consisted of a series of counter-current distributions<br />

in different solvent systems, whereby every fraction had to<br />

be tested for amino acid acceptor activity (i.e. in this case,<br />

enzymatic charging <strong>with</strong> radioactively labeled serine for measurement).<br />

We were fortunate that Zachau’s group received sufficient<br />

support to buy the most modern equipment available on the<br />

market: an automatic counter-current machine composed of<br />

300 tubes <strong>with</strong> 20 ml capacity each manufactured by E.C.<br />

Apparatus Co., Swarthmore, Pa., and an automatic liquid<br />

scintillation counter developed and sold by Hewlett-Packard<br />

Company.<br />

In principle, these devices worked reliably, but any operator’s<br />

error could have fatal consequences. Once a tube of the countercurrent<br />

machine had been broken, a whole battery of 10 tubes<br />

had to be replaced, because no glassblower around was able to<br />

repair it, so we had to wait for an original set supplied by the<br />

company. A nasty but advisable procedure was to clean the<br />

apparatus after each use by washing it <strong>with</strong> sulfochromic acid to<br />

avoid potential contamination by ‘‘finger’’ ribonuclease.<br />

At the end of 1965, we finished sequencing of yeast serine tRNA<br />

[10–12], shortly after Robert W. Holley’s group in Ithaca had<br />

published the sequence of the first tRNA from yeast [13]. The<br />

analytical procedures involved complete and partial digestions<br />

<strong>with</strong> T1 and pancreatic ribonucleases, resolved on extremely thin<br />

DEAE (diethylaminoethyl) cellulose columns in 7 M urea,<br />

subsequent digestions <strong>with</strong> snake venom phosphodiesterase or<br />

micrococcal nuclease, followed by paper chromatography and<br />

spectrometric identification of the single constituents generated<br />

from the oligonucleotides by alkaline hydrolysis. In all, we<br />

collected several thousand UV-spectra, all recorded by hand.


290<br />

H. FELDMANN<br />

In fact, we had solved the primary structures of two very closely<br />

related molecules not completely separated by counter-current<br />

distribution, termed Ser I and Ser II. But when I analyzed each of<br />

the side fractions, it became clear that Ser I and Ser II, both<br />

present in about equal amounts in our preparations, differed in<br />

only three nucleotides (one in the TCC loop and two in the extra<br />

loop) [14]. Later, when the complete sequence of the genome had<br />

been determined (see below), no gene for Ser I could be identified<br />

in lab strain aS288C but 11 copies for Ser II. The ‘‘secret’’ of Ser I<br />

has never been solved. Probably, commercial brewer’s yeast we<br />

used (C836) consisted of two related species. Along <strong>with</strong> the<br />

sequence determination, I became involved in characterizing the<br />

structures of two ‘‘odd’’ nucleotides, N 6 -acetylcytidin and<br />

isopentenyl-adenosin (iPA), the latter of which we had found in<br />

serine tRNA at the 3u side of the anticodon [15].<br />

A report on the serine tRNAs [16] was included in the Cold<br />

Spring Harbor Symposium on Quantitative <strong>Biology</strong> devoted to the<br />

‘‘Genetic Code,’’ 1966. This offered me the splendid opportunity<br />

not only to follow the current achievements reported at this venue<br />

but to visit a number of laboratories in the US, at the University<br />

of Albany, at the Roswell Park Memorial Institute in Buffalo, at<br />

the University of Illinois in Urbana, at Oak Ridge Natl. Lab. in<br />

Tennessee, and at the University of Chicago. I also visited old<br />

friends from Genetics, Fritz Melchers at the Salk Intitute in<br />

La Jolla, San Diego, Max Delbrück <strong>with</strong> his wife Manny and<br />

Charles David at CalTech in Pasadena, and Thomas Trautner at<br />

the UCSF, Berkeley. In order to take the cheapest way of flying to<br />

New York and back, I choose a prop-jet of Icelandic Airlines<br />

starting from Luxembourg, which offered a 24 hour stop-over in<br />

Reykjavik. There I met Johann Gudmundsson, who had obtained<br />

his diploma in chemistry during my time in Cologne and had<br />

taken a position in a fish cannery in Reykjavik. On the spot, he<br />

managed a sight-seeing tour in his veteran Ford car and showed<br />

me around a lot of the impressing country. This was ‘‘Iceland in<br />

24 hours,’’ but the impressions from this intense trip should stay<br />

for the rest of my life.<br />

With so many contacts and after having done some work in my<br />

‘‘new field,’’ it would have been easy for me to find a post-doctoral<br />

position in the United States, but just during my time in Genetics<br />

our two daughters had been born (Barbara in 1963 and Miriam in<br />

1966), and so we preferred to stay in old Germany.


A LIFE WITH YEAST MOLECULAR BIOLOGY 291<br />

Institute of Physiological Chemistry in Munich<br />

tRNA Biogenesis<br />

In early 1967, we had to say goodbye to Cologne and Genetics:<br />

Hans Zachau had been offered a chair at the Institute of<br />

Physiological Chemistry in Munich, and I was happy to get a<br />

tenure position there and to start my own laboratory. My first<br />

contact <strong>with</strong> yeast extended to a general topic of my research<br />

during the years to follow. What I had learned in <strong>Molecular</strong><br />

<strong>Biology</strong> from the ‘‘early days’’ on, I tried to pass on to our<br />

students, and I am happy that even many of the medical students<br />

realized the importance of molecular biology for modern medicine.<br />

At first, I continued to work on the multiplicity of serine tRNAs,<br />

trying to isolate isoacceptors (e.g. the one specific for the AGU/<br />

AGC codons), but this failed because of the minimal quantities of<br />

this species occurring in yeast [17]. (Later my lab at least<br />

succeeded in characterizing the three genes encoding this tRNA.)<br />

So I decided to work on the methionine specific yeast tRNAs, as<br />

we could be sure that there were two discernible activities, one for<br />

the initiation and one for the elongation of peptide chains [18].<br />

After initial experiments, we decided to completely change our<br />

former sequencing strategy, now employing [ 32 P]-labeled material<br />

and adopting the elegant ‘‘Sanger technique’’ [19]. I got<br />

accustomed to grow 24 liters batches of yeast cells fed <strong>with</strong><br />

200 mCi [ 32 P] phosphate each time we needed fresh tRNA. All<br />

manipulations for harvesting the cells could be done during night<br />

time leaving no traces of radioactivity in the lab or elsewhere.<br />

Supernatants were put to a device in the basement and stored in<br />

big tanks for decontamination, solid waste was kept in big iron<br />

casks for more than 10 half-life times of [ 32 P] so that virtually no<br />

radioactivity remained. A more serious issue was to convince our<br />

colleagues that, <strong>with</strong> appropriate precautions such as special<br />

safety hoods and a CO2 extinguisher, there was no problem<br />

performing high voltage electrophoresis in tanks filled <strong>with</strong><br />

20 liters kerosin for cooling. Fortunately, I could pay a short visit<br />

to the Sanger lab at MRC (Medical Research Council), Cambridge,<br />

where Bart Barrell showed me several tricks how to run the<br />

analyses and how to interpret the radioautographs obtained after<br />

2D-electrophoresis. We published the primary structure of the<br />

yeast non-initiator methionine tRNA (tRNA Met<br />

3 ) [20,21] after Tom<br />

RajBhandary’s lab had finished that of tRNA Met<br />

i [22].


292<br />

H. FELDMANN<br />

Besides this structural work I became interested in the<br />

characterization of precursors to tRNA in yeast as a model system.<br />

tRNA precursors had already been studied in E. coli and phage T4<br />

[23,24] and Sidney Altman and collaborators had detected that<br />

endonuclease P was necessary to produce mature tRNA from its<br />

precursors [25], but no details were known in eukaryotes [26]. We<br />

used gel electrophoresis of ‘‘soluble’’ RNA preparations of yeast<br />

cells pulse-labeled <strong>with</strong> high doses of [ 32 P] phosphate and found<br />

that some distinct bands migrating slower than mature tRNA<br />

appeared. The smaller of these products contained minor amounts<br />

of the tetranucleotide TCCGp characteristic for tRNA but only<br />

traces of other minor nucleotides, while the larger of these<br />

products contained the tetranucleotide UUCGp but no minor<br />

nucleotides. Thus we concluded that these bands represented<br />

precursors to tRNA. This was confirmed by incubating material<br />

isolated from several of these gel bands in vitro in a yeast cell<br />

lysate, which yielded mature tRNA in kind of a two-step process<br />

[27]. Soon after, Goodman, Olson, and Hall reported on the first<br />

yeast tRNA gene to have an intervening sequence [28].<br />

In conjunction <strong>with</strong> our efforts to identify the precursors to<br />

tRNA, we developed a two-dimensional gel electrophoretic system<br />

that enabled us to reproducibly map 40–50 individual tRNA<br />

species including isoacceptors from yeast, as well as individual<br />

precursors [29]. tRNAs were identified by (i) co-electrophoresis<br />

of purified [ 32 P] tRNAs <strong>with</strong> non-labeled bulk tRNA;<br />

(ii) comparison of patterns derived from pure tRNAs <strong>with</strong> bulk<br />

tRNA; (iii) fingerprinting of spots from pure [ 32 P] tRNA species;<br />

(iv) electrophoresis of bulk tRNA charged <strong>with</strong> one [ 3 H]- or [ 14 C]amino<br />

acid, whereby the aminoacyl tRNA was stabilized prior to<br />

electrophoresis by transforming the amino group into a 100-fold<br />

more stable OH-group. We realized that this technique of high<br />

resolution capacity – among other applications – was not only<br />

helpful to islolate specific yeast tRNAs but to identify the amino<br />

acid accepted by them, likewise also for determining the specific<br />

tRNAs contained in a tRNA population from any organism. One<br />

example is kindly mentioned by Guy Dirheimer, whom I met for<br />

the first time in the 60’s, in volume 44 of these Personal<br />

Recollections [30]. He sent Jean Weissenbach to my lab to learn<br />

the details of the procedure. They applied it to separate and<br />

isolate the mitochondrial tRNAs from yeast and started sequencing<br />

of several of those (e.g. [31]), a subject the Strasbourg lab


A LIFE WITH YEAST MOLECULAR BIOLOGY 293<br />

very successfully continued until 1986, also paying attention to<br />

the non-canonical codon recognition and the biogenesis of minor<br />

nucleotides in yeast mitochondrial tRNAs [32,33].<br />

The collaboration between Strasbourg and Munich was intensified<br />

by mutual visits of our whole groups during these years.<br />

Excellent opportunities for contacts <strong>with</strong> the many colleagues<br />

working in the tRNA field and exchange of new results and ideas<br />

were offered by the yearly tRNA workshops each one organized by<br />

a particular laboratory at most attractive places world-wide. Of<br />

those I keep a deep memory (and the Abstract booklets, too) are<br />

the ones in Cambridge (1970), Göttingen (1971), Nof Ginossar<br />

(Kibbuz in Israel), organized by Uriel Littauer in 1975, Sandbjerg<br />

(Alsen, Denmark; 1976 – because it took me back to the area<br />

where I had spent 2 years as a boy), Aarhus (1978), Strasbourg<br />

(1980), Tokyo (1983), Taos (New Mexico; 1985), and Umea˚ (1987).<br />

Most impressive was the workshop in Japan held in Hakone, a<br />

resort area by the foot of Fujiyama at a hotel built in 1899 for<br />

a visit of the German Emperor. I extended the trip <strong>with</strong> my<br />

friend Wolfgang Wintermeyer to visit Tokyo, Kyoto and Nara,<br />

Singapore, Hong Kong, Bangkok, and Taipei, which was easy to<br />

arrange as we flew by Singapore Airlines who offered multiple<br />

stop-overs at low cost.<br />

A very attractive and scenic place was Taos, where the meeting<br />

in 1985 was held in a motel, not far from the Taos skiing area,<br />

which some of the participants enjoyed for one free day. The 70<br />

fantastic slopes had been built by an Austrian fellow and given<br />

fairy tale’s names like Schneewittchen (Snow White), Rumpelstilzchen,<br />

etc. To reach the meeting, I had to rent an Ugly Duck in<br />

Albuquerque, but afterwards this car was good enough to carry<br />

me about 2,000 miles around Four Corner’s Monument. I enjoyed<br />

the picturesque landscape <strong>with</strong> its big miracles of nature among<br />

others Mesa Verde, Monument Valley, Painted Desert, Petrified<br />

Forest, and Grand Canyon.<br />

The two-dimensional gel electrophoresis system prompted<br />

Walter Kleinow from the Zoological Institute in Cologne, who<br />

worked on mitochondria of Locusta migratoria, to start collaboration<br />

<strong>with</strong> us. From the minute amounts of RNA he was able to<br />

prepare, we succeeded to first detect the unusually low (GþC)<br />

content for mitochondrial rRNA and tRNA and than to resolve<br />

B27 tRNA spots, which migrated faster than the cytosolic tRNAs<br />

indicating smaller sizes of the mitochondrial tRNAs [34]. That the


294<br />

H. FELDMANN<br />

population of 27 tRNAs was far below the minimal number of<br />

tRNAs to translate all sense codons according to the Wobble<br />

hypothesis (32 in cytoslic tRNA) had just been reported by<br />

Dirheimer and colleagues (e.g. [35]) from their investigations on<br />

yeast mitochondrial tRNAs. However, the smaller size and the<br />

low (GþC) of the locust mitochondrial tRNAs were unexpected<br />

and pointed to further peculiarities of these molecules.<br />

The low amounts of material available to do further studies on<br />

locust tRNAs tempted me in 1976 to ‘‘bit to the side’’ and to<br />

devote part of our lab activity (Figure 3) to the isolation and<br />

analysis of mtDNA and tRNA from rat liver mitochondria.<br />

Around this time, some data on these issues had been published<br />

but they were rather inconsistent. So I interested a new doctoral<br />

student, Rüdiger GroXkopf, to take up this work in 1977/1978. In<br />

the beginning we had to isolate the starting material each time<br />

from sacrificed rats as our laboratory had no permission for<br />

cloning as yet. Also home-made restriction enzymes had to be<br />

employed and I am still grateful to the colleagues from Zachau’s<br />

group for their generous gifts of several enzymes. So, as a basis for<br />

Fig. 3. My collaborators in 1977: Antonin Eigel, Christa BleifuX, Maria<br />

Wagner, Petra Müller, Gabriele Goertz, and Rüdiger GroXkopf.


A LIFE WITH YEAST MOLECULAR BIOLOGY 295<br />

further experiments we established a reliable restriction map of<br />

the mtDNA [36], and finally could take advantage of cloning.<br />

Using the Maxam-Gilbert technique [37], large portions of the<br />

mtDNA were sequenced and analyzed [38–40]. These publications<br />

document that we did not give up our efforts, though I became<br />

aware on a trip to Spetses in 1979 that Fred Sanger’s group in<br />

Cambridge was about to publish the full sequence of human<br />

mtDNA [41,42]. But we consoled ourselves that we were two<br />

people that had started in ignorance, and that they were by 14<br />

people. We were satisfied, however, that the work of Dirheimer<br />

and his colleagues on yeast mt tRNA or ours on locust mt tRNA<br />

had been extended to human mitochondria. This knowledge on<br />

the human mitochondria later formed a basis to recognize the<br />

many diseases caused by mtDNA mutations.<br />

<strong>Yeast</strong> tRNA Genes and Ty Elements<br />

Once we had learned that even eukaryotic tRNA genes occupy<br />

more genomic space than prescribed by the structural part, we<br />

became interested in the problem, how many genes do code for a<br />

particular tRNA species in yeast and how are these genetic<br />

entities arranged <strong>with</strong>in the genome? Two organisms had been<br />

studied thus far in some detail: E. coli [43] and Xenopus laevis<br />

[44]. For E. coli, it had been established that tRNA genes<br />

sometimes are encountered as singular transcriptional units but<br />

that the majority of them were found to be arranged as<br />

multimeric transcriptional units, either in polycistronic entities,<br />

or interspersed into ribosomal RNA transcriptional units. For<br />

eukaryotes it was known that tRNA genes occur at a higher<br />

redundancy than in prokaryotes. Particularly in Xenopus oocytes<br />

gene redundancy can amount to several hundred copies per tRNA<br />

species. Moreover, it had been demonstrated that here the tRNA<br />

genes together <strong>with</strong> non-transcribed spacers form clusters of<br />

serially repeated sequences. Our initial experiments using tRNA-<br />

DNA hybridization indicated the occurrence of B10 gene copies<br />

for some of the major tRNA species from yeast tested [45], but I<br />

was mislead to interpret our results as several (isogenic or nonisogenic)<br />

copies being clustered like in Xenopus [44] or in<br />

<strong>Dr</strong>osophila [46]. A more reliable statement was obtained by<br />

measuring the lengths of transcriptional units of tRNA genes by


296<br />

H. FELDMANN<br />

the UV-light technique [47]. Clearly, the transcriptional units<br />

were no longer than 200 bp for almost all of the 13 tRNA species<br />

tested and we concluded that these tRNA genes are scattered<br />

throughout the genome in singular entities. In 1978, we began<br />

to investigate the genomic organization of yeast tRNA genes at<br />

the molecular level. This became feasible only when we had<br />

adopted the genetic engineering techniques developed from the<br />

mid-1970s on.<br />

The beginning of genetic engineering undoubtedly was the<br />

successful approach of Paul Berg and his collaborators to show<br />

that recombinant DNA could be maintained in a host cell [48].<br />

I vividly remember a long night session <strong>with</strong> full moon in the<br />

courtyard of a monastery at the Summer School 1971 held in<br />

Erice, where Berg, Sanger, and Tomkins chaired a discussion on<br />

the three paradigm shifts initiating a revolution in <strong>Molecular</strong><br />

<strong>Biology</strong>: the discovery and use of restriction enzymes [49–51]; the<br />

utilization of recombinant DNA; and the necessity for developing<br />

methods allowing the determination of long DNA sequences,<br />

which had to follow principles different from the ones applied<br />

to the sequencing of RNA and became reality in the years to<br />

follow [52–54].<br />

Though since 1972, several methods had been developed for<br />

cloning and characterization of recombinant DNA molecules, it<br />

was only after the Asilomar Conference on Recombinant DNA<br />

[55] that safe and simple procedures and bacterial vehicles could<br />

be propagated for extensive use of cloning recombinant DNA<br />

molecules. A big advantage of cloning vehicles based on phage<br />

lambda was the larger size of DNA sequences that could be<br />

accommodated. Those latter properties were shared by the<br />

cosmids, plasmid gene-cloning vectors packageable in phage<br />

lambda heads. These methods were applied to yeast genes, too.<br />

The transformation of yeast cells by replicating hybrid plasmids,<br />

however, was the first successful transformation of a eukaryotic<br />

cell and marked a break-through for yeast molecular biology<br />

[56,57].<br />

Our first approach to clone various tRNA genes from yeast was<br />

only semi-selective and largely followed conventional cloning<br />

techniques, but our aim was clear: we wanted to study the<br />

structure and genomic environment of these genes and learn how<br />

they are expressed. Judith Olah coming as a post-doc was to<br />

initiate this work [58]. Unfortunately, in October 1979 an


A LIFE WITH YEAST MOLECULAR BIOLOGY 297<br />

unforeseen incision happened: I suffered a stroke and became<br />

paralyzed on my left body side. This put me back for a very long<br />

time. Luckily for me, I did not loose speech or mental capacity.<br />

Though I recovered after some years of physical restriction, at the<br />

age of 47 I had no longer a chance to look for a position abroad. So,<br />

I modestly continued the work on tRNA genes <strong>with</strong> the invaluable<br />

help of a very nice lab crew [59–61].<br />

Once we had collected data for several tRNA genes, we noticed<br />

that their flanking sequences revealed extended blocks of<br />

homology, including those for isoacceptors as well as those for<br />

non-related genes [61]. These similarities were largely detected<br />

by eye-inspection, as computer-assisted searches at that time<br />

were not yet available. The occurrence of repetitive elements in<br />

this context was a novel observation, since all sequences of yeast<br />

tRNA genes determined by our colleagues did not reach very far<br />

into the flanking regions. We speculated that the sequence<br />

elements might be of functional significance for the expression<br />

(like the conserved internal A and B boxes or the 3u-termination<br />

signal) or for the process of dispersion of the multiple tRNA gene<br />

copies over the yeast genome. In 1982, <strong>with</strong> more detailed<br />

sequence information, we obtained evidence [62] that most of the<br />

repetitive sequences represented specimen of the newly detected<br />

class of yeast Ty1 elements or their dispersed LTR remnants (solo<br />

delta’s) [63]. Shortly after their discovery, Ty1 elements had been<br />

shown to mediate DNA rearrangements (e.g. [64,65]), and, in<br />

accord <strong>with</strong> their capability of transposition, they could be moved<br />

to new chromosomal loci into pre-existing Ty1 elements by a gene<br />

conversion mechanism or be excised from a given chromosomal<br />

locus leaving behind only one of their deltas.<br />

In consecutive studies we were able to confirm that the<br />

5u-flanking sequences of tRNA genes constituted preferred<br />

integration sites for Ty transposition, and that these were<br />

localized in region-specific distances upstream of the genes; in<br />

many cases, multiple integration and excision events were<br />

documented genome-wide [66–68]. The phenomenon of preferred<br />

integration of Ty elements upstream of tRNA genes was later<br />

inforced by other groups investigating Ty-host interactions (e.g.<br />

[69,70]). Although target site selection is still not well understood<br />

for this general class of elements, it is becoming clear that Ty<br />

elements target their integration to very specific regions of their<br />

host genomes, probably in order to prevent disturbances of cell


298<br />

H. FELDMANN<br />

integrity. Targets containing genes transcribed by RNA polymerase<br />

III (Pol III) were found up to several 100-fold more active<br />

as integration targets for Ty1 than ‘‘cold’’ sequences lacking such<br />

genes. High-frequency targeting was dependent on Pol III<br />

transcription, and the region specific integration was found to<br />

occur in an upstream window of B700 bp [71]. The pattern of<br />

insertion was non-random and not distributed equally throughout<br />

the genome, but periodic, <strong>with</strong> peaks separated by B80 bp.<br />

Recently, it has been demonstrated that ATP-dependent chromatin<br />

remodeling by Isw2p upstream of tRNA genes leads to<br />

changes in chromatin structure and Ty1 integration site selection,<br />

and that Bdp1p, a component of the RNA polymerase III<br />

transcription factor TFIIIB, is required for targeting of Isw2<br />

complex to tRNA genes [72].<br />

Over the years, details on the structural and functional<br />

organization of the yeast transposons were worked out by several<br />

groups. The Ty elements became useful models for the epitome of<br />

retrotransposition, and manifold aspects pertinent to this theme<br />

are still under study to present. First indications that Ty<br />

elements represent autonomous genetic entities which direct<br />

expression of endogenous genes was obtained from experiments<br />

in Kingsman’s laboratory [73]. Soon it was established that Ty1<br />

followed a retrovirus-like strategy for the expression of a large<br />

fusion protein [74]. Concomitantly, a second class of variant Ty<br />

elements, Ty2, was shown to obey a similar sequence organization<br />

and expression strategy as the Ty1 class elements [75]. Other<br />

experiments confirmed that Ty elements transpose through an<br />

RNA intermediate [76]. The retrovirus-like gene organization in<br />

Ty1 became also evident from its complete nucleotide sequence<br />

[77,78].<br />

In the Ty1/2 elements, two open reading frames, TYA and TYB,<br />

comprise sequences encoding the retrovirus-like gag and pol<br />

proteins, whereby a translational frameshift (in a þ1 mode) can<br />

occur in the region overlapping TYA and TYB [79] thus producing<br />

a gag-pol polyprotein. Finally, the minimal site for ribosomal<br />

frameshifting in Ty1/2 was determined to be a seven nucleotide<br />

sequence which induces tRNA slippage involving a minor tRNA<br />

species [80]. This finding rendered an explanation at the<br />

molecular level as to why the gag versus pol protein precursors<br />

were produced in a ratio of 20 to 1: translation of TYA was<br />

stopped at a usual stop codon in this minimal site, while


A LIFE WITH YEAST MOLECULAR BIOLOGY 299<br />

read-through by frameshifting was limited by the availability of a<br />

rare tRNA.<br />

Further evidence for the similarity between the Ty elements<br />

and retroviruses was provided by the finding that the RNA<br />

transcript of Ty together <strong>with</strong> the smaller proteins processed out<br />

of the precursor proteins by the Ty protease [81] are associated<br />

<strong>with</strong> virus-like particles in yeast [82]. In contrast to retroviruses,<br />

however, these Ty virus-like particles (Ty-VLP) turned out not to<br />

be infectious and hence are trapped <strong>with</strong>in its host.<br />

The detailed characterization of Ty3 (a gipsy type retrotransposon)<br />

revealed [83] that this element also transposes<br />

via VLPs as transposition-competent particles and exhibits<br />

translational frameshifting in a þ1 mode. Previous studies by<br />

the group of Susan Sandmeyer had shown that Ty3 (or its Long<br />

Terminal Direct Repeats (LTRs), sigma) insertions had occurred<br />

consistently in a 16–19 bp distance upstream of several tRNA<br />

genes.<br />

In this concert, Rolf Stucka identified Ty4 as a new type of yeast<br />

elements occurring in low-copy number, belonging to the class of<br />

copia elements and possessing a gene organization and expression<br />

strategy similar to Ty1/2; Ty4 also integrates into tRNA upstream<br />

regions [84,85]. However, we found that transposition capability<br />

was rather low [86]. From a collaboration <strong>with</strong> Cécile Neuvéglise<br />

and her colleagues on the genomic evolution of retrotransposons<br />

in Hemiascomycetous yeasts it appeared that Ty4 is an evolutionary<br />

recent element [87].<br />

The last retrotransposon found in yeast, Ty5, revealed a<br />

number of features deviant from those of the other Ty elements:<br />

its preferred target sites were identified to be silent chromatin<br />

regions, such as origins of replication at the telomeres and silent<br />

mating type loci [88]. Targeting was found to be mediated by<br />

interactions between Ty5 integrase and silencing proteins, and it<br />

was argued that recognition of specific chromatin domains may be<br />

a general mechanism by which retrotransposons and retroviruses<br />

determine integration sites [89].<br />

The second question, whether there was a transcriptional<br />

interference between Ty insertions and tRNA genes was<br />

answered positively by our first experiments using micro-injection<br />

of various such constructs into Xenopus oocytes [90]: particular<br />

segments revealed a stimulatory effect on tRNA gene transcription.<br />

As this constituted a heterologous system, we sought to


300<br />

H. FELDMANN<br />

prove our findings in the homologous system. In order to be able<br />

to identify and quantitate transcripts from an individual gene,<br />

Robert Krieg and Rolf Stucka synthesized a unique ‘‘artificial<br />

tRNA gene’’ (SYN2): it was tagged by an intron-like sequence<br />

that could not be spliced out from its long precursor but otherwise<br />

behaved like resident tRNA genes [91]. This gene combined <strong>with</strong><br />

various Ty constructs and integrated as a single copy each into<br />

the yeast genome was used to monitor the transcriptional<br />

interference between Ty (and segments thereof) and a flanking<br />

tRNA gene as well as the chromatin conformation of the<br />

stable transcription complex and its flanking regions [91,92].<br />

Figure 4 shows a photograph of my collaborators involved in this<br />

work at a birthday trip in 1988.<br />

We observed that there is a modest stimulatory effect (like in<br />

the majority of regulatory systems in yeast) of Ty or LTR<br />

insertions upstream of a tRNA gene on its expression in vivo.<br />

Transcriptional interference between Ty1 insertions and two<br />

POL III-transcribed genes was later also shown in the cases of<br />

Fig. 4. People of my lab crew around 1988: Gertrud Mannhaupt, Hans<br />

Lochmüller, Susanne Mitzel, Robert Krieg, Rolf Stucka, Christa Schwarzlose,<br />

and Uschi Obermeier.


A LIFE WITH YEAST MOLECULAR BIOLOGY 301<br />

tagged SNR6 and SUP2 [93]; vice versa, RNA analysis indicated a<br />

modest tRNA position effect on Ty1 transcription at native<br />

chromosomal loci. Further, this study revealed that tRNA genes<br />

exert a modest inhibitory effect on adjacent pol II promoters, a<br />

result that was confirmed in other experiments [94].<br />

The problem of correlating tRNA gene expression and chromatin<br />

structure is more complex. The data we and others (e.g. Refs<br />

[91–93], and references cited therein) obtained supported the<br />

following model: (i) tRNA genes counteract the formation of a<br />

canonical chromatin structure over a window reaching from<br />

B30 bp each upstream and downstream. In other words, actively<br />

transcribed tRNA genes have to be kept free of nucleosomes.<br />

(ii) The general pattern tRNA genes exhibit in DNaseI digestion<br />

experiments is a triplet of hypersensitive sites resulting from<br />

protection of sequences at the A and B box elements and<br />

accessibility upstream and downstream from the structural gene<br />

and between the A and B boxes, reflecting the binding of TFIIIC to<br />

the intragenic promoter and the tight binding of TFIIIB to<br />

the upstream transcription initiation site (B30 bp in length).<br />

(iii) Accessibility of this site by TFIIIB is crucial for active tRNA<br />

gene transcription, so that this region has to be kept in a<br />

nucleosome-free configuration. (iv) In DNaseI experiments the<br />

adjacent hypersensitive site(s) indicating canonical nucleosome<br />

spacing are located B170 bp and B340 bp upstream from the<br />

initiation start site of actively transcribed tRNA genes. The first<br />

upstream nucleosome in these instances is found positioned in a<br />

way as to form a boundary induced by the transcription complex.<br />

(v) A prerequisite for the induction of such a constellation is that<br />

the formation of the transcriptional complex outweighs the<br />

formation of nucleosomes, a situation that preveiled in competiton<br />

experiments. (vi) Whenever the sequences upstream of a tRNA<br />

gene are ‘‘favorable’’ to assist this positioning effect, transcription<br />

is enabled at a normal or even slightly elevated level. In<br />

‘‘unfavorable’’ cases, however, nucleosomes can be formed over<br />

these sequences thus exerting a constraint for transcriptional<br />

initiation. We documented this correlation in a number of<br />

experiments using appropriate constructs and mapping hypersensitive<br />

sites and transcriptional efficacy concomitantly [91,92]. The<br />

highest transcriptional rates were always found in constructs, in<br />

which Ty elements, delta or tau sequences had been placed into<br />

‘‘native’’ distances upstream of a tRNA gene.


302<br />

The <strong>Yeast</strong> Genome Project<br />

H. FELDMANN<br />

In the years between 1985 and 1988, our laboratory work slowly<br />

developed into a new phase. During their thesis work, Joachim<br />

Hauber and Peter Nelböck-Hochstetter had used high-molecular<br />

weight yeast DNA to clone fragments 35–40 kb in length into a<br />

cosmid vector (pY3030) that W. Piepersberg from the Munich<br />

Institute of Genetics had kindly provided to us. Both of them felt<br />

that it was timely to turn to a genomic scale, dissecting the<br />

organization of genomic entities along whole chromosomes. With<br />

the help of a technician Peter managed to establish a cosmid<br />

bank of 3,000 distinct clones, to prepare DNA from these by<br />

‘‘mini-preps’’ and to fix it onto filters in a slot-blot apparatus<br />

<strong>with</strong>in 4 weeks. This procedure was repeated a second time and<br />

we ended up <strong>with</strong> two ordered cosmid libraries in all representing<br />

the 12.8 Mb yeast genome at P ¼ 99.99%, that is 12 times the<br />

genome equivalent. Together <strong>with</strong> Rolf Stucka, Peter Nelböck<br />

established a physical map of chromosome II by means of<br />

‘‘chromosomal walking’’ and succeeded in localizing a variety of<br />

tRNA genes, Ty elements, and genes for diverse functions.<br />

Though these results were only published in form of doctoral<br />

theses, somehow we had sort of a favorable undercover press,<br />

which caused André Goffeau from Louvain-la-Neuve to ring me<br />

up in the lab 1 day in summer 1988. He asked me whether we<br />

would like to contribute to an assessment on ‘‘Sequencing of the<br />

<strong>Yeast</strong> Genome’’ he was preparing for the BRIDGE Programme of<br />

the European Communities [95]. We were enthusiastic about this<br />

initiative and, together <strong>with</strong> Yde Steensma from Leyden,<br />

produced an overview on how to take advantage of ordered<br />

cosmid libraries for such an ambitious project. It is a pity that this<br />

assessment to which a number of renowned colleagues participated,<br />

has never been made publicly available. It contains some<br />

ideas or predictions which never became reality, but many others<br />

that did. André tells more details about the difficulties he<br />

encountered when considering the launching of chromosome III<br />

sequencing [96], which for a number of reasons had been chosen<br />

to be the first chromosome to be tackled in 1989. After he had<br />

solved the bureaucratic obstacles, the enterprise run rather<br />

smoothly thanks to his untiring effort as well as that of Steve<br />

Oliver from Manchester as the ‘‘DNA coordinator’’ and the 35<br />

European colleagues who participated in this project. Gertrud


A LIFE WITH YEAST MOLECULAR BIOLOGY 303<br />

Mannhaupt, whom I could hire as a senior collaborator, together<br />

<strong>with</strong> Irene Vetter, took care of our share in chromosome III<br />

sequencing but Gertrud finally became the ‘‘good spirit’’ of all our<br />

further scientific enterprises. We were happy that we received EC<br />

support for our sequencing contributions, about 5 ECU per final<br />

base pair assembled as André had promised and accomplished.<br />

Moreover, the payment was never delayed as soon as the<br />

sequences had been proven and annotated. The collection and<br />

assembly of the sequence data had been put in the hands of MIPS<br />

(the Martinsried Institute for Protein Sequences), that had been<br />

developed by Werner Mewes at the Martinsried Max-Planck-<br />

Institute for Biochemistry. He had set up the necessary<br />

informatic infrastructure which he – sometimes under considerable<br />

bureaucratic difficulties – was able to offer for the whole time<br />

of the yeast genome project. As I myself had fun in computing, we<br />

were in close and most friendly contact all these years, and still<br />

are after he moved to another university institution near Munich.<br />

Before the sequencing of chromosome III was started in 1989,<br />

André had initiated regular meetings of a ‘‘Steering Committee’’<br />

that should supervise current and future activities. As soon as the<br />

first data had been collected, the sequencers and the committee<br />

met at regular intervals for progress reports and to exchange<br />

know-how and expertise. We followed the proposal of André and<br />

Steve to publish coherent regions from chromosome III, whenever<br />

the analyses had yielded useful information on new genes [97–99].<br />

Before chromosome III had been finalized in 1992 [100], André<br />

and the ‘‘network’’ had to decide how to continue.<br />

As our initial complete chromosome II cosmid library [101] was<br />

not found suitable to serve as DNA material to start the project<br />

(the DNA was from an industrial strain), Rolf Stucka took the<br />

initiative to develop a new library from the lab strain aS228C,<br />

which had been given preference in the discussions of the<br />

Steering Committee. Thus we were happy to be awarded the<br />

contract for sequencing chromosome II (B820 kb) this time.<br />

Concomitantly, Bernard Dujon’s laboratory which had prepared<br />

an ordered yeast cosmid library by means of another vector [102],<br />

started sequencing chromosome XI (B670 Kb) and finished in<br />

1994 [103]. Though we were paid as ‘‘DNA coordinator,’’ EC had<br />

reduced the subsidiary amount allocated for each final bp to 2<br />

ECU. Luckily for us, the helper in the hour of pecuniary need was<br />

the German Ministry for Science and Technology (BMFT) which


304<br />

H. FELDMANN<br />

raised our income per bp by another 2 ECU. I might insert here<br />

that our lab largely had to rely on funds (for staff, equipment, and<br />

consumables) we had to invite from grant-giving institutions.<br />

While, for example, the Deutsche Forschungsgemeinschaft (DFG)<br />

in those years was not prepared to subsidize any sequencing<br />

project, the BMFT was open for this type of funding, because they<br />

could expect to gain from novel technical developments and to<br />

draw new insights from initiatives such as the yeast genome<br />

project. Indeed, it was obvious for anyone that the final goal of<br />

this project was much beyond establishing the complete sequence<br />

of a small eukaryote, namely to use this information for<br />

concurrent or subsequent functional analyses. As a fact, the<br />

wealth of information obtained in the yeast genome project<br />

turned out to be extremely useful as a reference against which<br />

sequences of human, animal or plant genes, and those of a<br />

multitude of unicellular organisms under study could be<br />

compared. André has given credit [96] to BMFT’s ‘‘outspoken<br />

support y (<strong>with</strong>out which) y the EC would not have been<br />

engaged in sequencing the yeast genome.’’<br />

While Gertrud Mannhaupt <strong>with</strong> three technicians took care of<br />

the sequencing and the analysis of particular regions of chromosome<br />

II [104–107] and later those from chromosome XV [108],<br />

Rolf Stucka was providing cosmid clones to the 18 European<br />

sequencing laboratories. We used to travel to the internal<br />

meetings <strong>with</strong> an 8 meter long detailed map of chromosome II<br />

to co-ordinate the program and to avoid too much overlapping<br />

during sequencing. It is remarkable that Rolf found time to follow<br />

his own projects, one of which was aimed at aspects of sugar<br />

metabolism – in a nice collaboration <strong>with</strong> Carlos Gancedo from<br />

Madrid [109–112]. Before the sequence of chromosome II had<br />

been solved [113], our lab concentrated on a new theme (see<br />

below). None the less, we eagerly followed the rapid developments<br />

in sequencing the many chromosomes that were left and<br />

brilliantly managed and brought to success by André Goffeau<br />

<strong>with</strong>in the next 2 years [114–116]. As André Goffeau mentioned<br />

[96] he succeeded ‘‘to keep a collaborative spirit in the international<br />

yeast-sequencing community’’ by arranging the full<br />

participation of some American groups (particularly <strong>with</strong> the<br />

help of Mark Johnston) as well as that of Howard Bussey’s, Bart<br />

Barrell’s, and Peter Philippsen’s groups to the project. The initial<br />

aversion of the American scientific community to engage in an


A LIFE WITH YEAST MOLECULAR BIOLOGY 305<br />

international network for sequencing the yeast genome was made<br />

clear to me during the 1990 Cold Spring Harbor Meeting of<br />

‘‘Genome Mapping and Sequencing’’ to which I participated.<br />

André had asked me to present our intentions in a short ‘‘free’’<br />

communication, but the organizers curtly refused. Only <strong>Dr</strong> Ito, a<br />

Japanese who worked at the Max-Planck-Institute for Genetics in<br />

Berlin and who chaired this session, was kind enough to allot<br />

5 minutes for my presentation.<br />

The sequencing project was followed by several collaborative<br />

initiatives for functional analyses of the wealth of novel genes<br />

that had been detected. We participated in a German network<br />

chaired by Karl-Dieter Entian from Frankfort [117], and I was<br />

able to document our continuous affiliation <strong>with</strong> the yeast<br />

projects in separate chapter of three books [118–120].<br />

<strong>Yeast</strong> 26S Proteasome and Triple A Proteins<br />

In connection <strong>with</strong> our work on Ty elements and the yeast<br />

genome sequencing project we became interested in yeast<br />

transcription factors. By looking into the TATA box binding<br />

factor, Rolf Stucka found that the protein sequence had a<br />

bipartite structural symmetry – probably the consequence of an<br />

ancestral gene duplication – that helped explain its saddle-like<br />

structure [121]. The theme ‘‘transcription factors’’ became a<br />

major issue when I got involved in setting up a special DFG<br />

program devoted to ‘‘Factors and Mechanisms of Gene Activation’’<br />

(see below). In this context, we wanted to search for new<br />

factors involved in Ty expression. Peter Nelböck had just<br />

published a paper [122] in which he reported on a putative novel<br />

protein interacting <strong>with</strong> the human immunodeficiency virus tat<br />

transactivator, called TBP-1 [122]. As HIV in many respects<br />

resembled Ty, we asked for a probe to search for similar factors in<br />

our yeast cosmid library. Already the first experiments Rolf<br />

Stucka undertook in 1992 were successful: a dozen different<br />

clones could be isolated and sequenced by our lab crew. To our<br />

surprise, the most prominent feature of the encoded proteins was<br />

a highly conserved domain containing nearly 200 amino acids, in<br />

one or two copies, encompassing two sequence elements characteristic<br />

of a novel type of putative ATPases. The first<br />

observation of this new category of proteins and its designation


306<br />

H. FELDMANN<br />

‘‘AAA proteins’’ stems from a paper of the laboratory of Wolf<br />

Kunau [123]. They noticed that the novel motif occurred in three<br />

groups of proteins fulfilling different cellular functions, such as<br />

Sec18p and NSF; Cdc48p, p97, and VCP; and TBP-1 (quotations,<br />

see Ref. [124]) and argued that ‘‘these proteins are members of a<br />

novel family of putative ATPases and may be descendants of one<br />

common ancestor.’’ Indeed, <strong>with</strong>in a short time this family was<br />

found to be more widespread than initially thought and<br />

comprised a large variety of members in both eukaryotic and<br />

prokaryotic organisms. The first international conference on AAA<br />

proteins was held in Gif-sur Yvette in 1995 and the name for this<br />

family accepted by the community.<br />

When we published our results, further members of the AAA<br />

family had been characterized ([124]; and references cited<br />

herein). From comparisons we inferred that our collection<br />

specified four members of the yeast 26S proteasome, Yta1p,<br />

Yta2p, Yta3p, and Yta5p, whereby Sug1/Cim3 (as well as Cim5/<br />

Yta3) had been discovered [125] during our work on this subject;<br />

the sixth yeast proteasomal AAA protein was recognized as Sug2<br />

[126]. In order to keep a unified nomenclature, these AAA<br />

ATPases, meanwhile identified as subunits of the regulatory<br />

particle of the 26S proteasome, were called Rpt1 through Rpt6,<br />

whereas the non-AAA proteins were designated Rpn1–14 [127].<br />

Likewise interesting became the Yta10, Yta11, and Yta12<br />

proteins, which were highly similar in structure and also revealed<br />

the presence of the novel ATPase domain but bearing additional<br />

modules. Homologies <strong>with</strong> ftsH/hflB from E. coli were obvious as<br />

well as sequences typical for mitochondrial ‘‘matrix-targeting<br />

domains.’’ These and further notions led us to propose [124] ‘‘that<br />

Yta10, Yta11, and Yta12 may represent subunits of a proteasomelike<br />

complex in yeast mitochondria. This complex might be<br />

similar and evolutionarily related to the cytosolic 26S protease<br />

and thus constitute a mitochondrial proteolytic system in addition<br />

to the one that bears similarity to the Lon proteases y’’ Reimund<br />

Tauer engaged in this subject [128] and – in a fruitful cooperation<br />

<strong>with</strong> Thomas Langer and his group [129] working in Walter<br />

Neupert’s department – it was established that these three AAA<br />

proteins formed a novel ATP-dependent complex in the inner<br />

membrane of mitochondria <strong>with</strong> proteolytic and chaperone-like<br />

activities [130], whereby the proteolytic activity was found to be<br />

exerted by a Zn-dependent metallo-protease module linked to the


A LIFE WITH YEAST MOLECULAR BIOLOGY 307<br />

AAA domain. Thomas Langer and his collaborators took care of<br />

the further characterization of this ‘‘mitochondrial quality<br />

control system’’ [131] and since worked out a wealth of important<br />

aspects in the biogenesis of mitochondria [132]. Together <strong>with</strong><br />

Thomas, we organized the second international workshop on<br />

Triple A proteins in 1997 at Tutzing (upper Bavaria) supported by<br />

EMBO.<br />

The S. cerevisiae genes encoding the proteasomal entities are<br />

single copy throughout, and the majority of them are essential for<br />

cell viability. As I was convinced that the yeast ubiquitinproteasome<br />

system (similar to the ribosome) fulfils the requirements<br />

of a regulatory network, in which expression of the single<br />

genes is co-ordinated, we followed this issue. Again, it turned out<br />

a justified speculation. First, we detected a unique upstream<br />

nonamer box (GGTGGCAAA) which we called PACE (proteasome<br />

associated control element) to occur in the promoter regions of 28<br />

out of the 31 proteasomal genes, including the RPT genes and<br />

most of the RPN (non-AAA) genes, and in B50 further yeast<br />

genes involved in the ubiquitin-proteasome pathway as well as in<br />

genes mediating diverse regulatory functions in yeast. We set out<br />

to identify the cognate DNA binding factor and were surprised to<br />

come across Rpn4, a subunit of the 19S regulatory cap. The<br />

structure and the role of Rpn4 to act as a transcriptional activator<br />

was substantialized in a number of experiments [133], for which<br />

we took advantage of a reporter system we had developed many<br />

years before [134]. Unfortunately, after this seminal contribution<br />

I had to quit my lab due to age.<br />

In the following years, it was demonstrated that Rpn4 links<br />

base excision repair <strong>with</strong> proteasomes [135]. Further ingenious<br />

studies by Alex Varshavsky’s lab revealed that Rpn4p is a ligand,<br />

substrate, and transcriptional regulator of the 26S proteasome<br />

and exerts a negative feedback control (e.g. [136–139]). RPN4<br />

appears to be under control of several stress factors, such as<br />

Yap1p and Pdr1/3p [140]. On the other hand, Rpn4p strongly<br />

mediates the cell’s adaptation to arsenic-induced stress as<br />

revealed by expression profiling [141]. Filamentous-form growth<br />

is controlled by many modules in an integrated network, in which<br />

the proteasome system is probably integrated through Rpn4<br />

[142]. Also in mammals and <strong>Dr</strong>osophila (for review [143]), a<br />

similar system appears to be operative, but no molecular details<br />

are available as yet.


308<br />

H. FELDMANN<br />

Administration and Teaching Medical Students<br />

In 1967, when we had moved to Munich, for some period of time I<br />

was to take care of all kinds of administrative business: purchase<br />

and maintenance of equipment, accounting, etc. One task that<br />

met my interests was to keep liaison <strong>with</strong> the university building<br />

department, which had begun to raise an eight-storey new<br />

institute in our courtyard that should offer more space to the<br />

two new chairs of biochemistry (see Ref. [144]) and physiology.<br />

Theodor Bücher, who initially was the only head of the institute<br />

of physiological chemistry, in his negotiations <strong>with</strong> the Bavarian<br />

Ministry of Science had accomplished that three new departments<br />

were created. Though we could improve some internal facilities<br />

during the construction of the new building (such as lab<br />

equipment, isotope labs) we were not able to prevent serious<br />

mistakes that are still persistent despite many necessary and<br />

costly repair over the years. For my part I was happy to move into<br />

a new lab and a well-equipped isotope lab in 1971.<br />

All the years I worked at the Institute of Physiological<br />

Chemistry in Munich, I had to look after the training of medical<br />

students at several levels. These teaching obligations and the<br />

administrative loads connected <strong>with</strong> them were greatly put on the<br />

shoulders of the ‘‘younger’’ staff, because most of the professors<br />

preferred to concentrate on giving the general lectures.<br />

One of my first activities was to organize a serious practical<br />

course in biochemistry, setting up reasonable experiments. The<br />

most intriguing problem was to develop a fixed schedule to hurry<br />

so many students through these venues <strong>with</strong>in the minimal time<br />

of four terms: logistics had to consider subject and number of<br />

students as well as time, space, and staff available, in other words<br />

the time-table had to be strictly non-overlapping for each<br />

individual. Whoever has encountered such a demand, knows<br />

quite well that it can hardly be solved by computer programs.<br />

With my colleague Joachim Otto from the neighboring department<br />

we managed to develop a ‘‘master-plan’’ which was followed<br />

through 25 years. In 1974, the faculty entrusted me <strong>with</strong> the coordination<br />

of pre-clinical education and I had to chair the<br />

meetings of a committee consisting of representatives from every<br />

discipline, university administration, and examination board. In<br />

the beginning this task took much of my time, but in the end the<br />

meetings had to take place only twice a year.


A LIFE WITH YEAST MOLECULAR BIOLOGY 309<br />

Analytica<br />

In 1977, I was elected member of the Scientific Committee for the<br />

bi-annual Conference of Bioanalytics held in Munich, connected<br />

to a world-wide respected trade fair in biochemical, biomedical,<br />

and bioanalytical instrumentation, the Analytica. I was then<br />

nominated to take care of the formalities connected to the award<br />

of a special prize Biochemical Analytics (later: <strong>Molecular</strong><br />

Bioanalytics), and to act as its Secretary. The prize was<br />

inaugurated by a donation from Boehringer Mannheim GmbH<br />

and later continued by Roche Diagnostics GmbH. The statutes<br />

specify that the prize should be awarded for outstanding work in<br />

the field of molecular bioanalysis, that is for the development of<br />

novel methods and for new scientific contributions to the<br />

advancement of molecular and biochemical analysis in diagnostics<br />

and therapy. The awardees are nominated by a prize committee<br />

consisting of personalities representing the Gesellschaft für<br />

Biochemie und Molekularbiologie, the company, and the biochemical,<br />

biophysical and medical research, and the prize is<br />

handed over every 2 years at the Analytica Conference. For many<br />

years, when the German Society for Clinical Chemistry was the<br />

body scientifically responsible for all enterprise connected to the<br />

Analytica, the prize winners and some hundred guests were<br />

invited to Bayerischer Hof in Munich to celebrate the event<br />

(Figure 5).<br />

I am delighted that the list of the Prize winners (Table 1) names<br />

eminent researchers, who indeed made outstanding contributions<br />

to the fields specified above. A satisfaction for all those colleagues<br />

that participated in the selection of these persons was that in<br />

several cases this Prize was given to the awardees well in advance<br />

of the Nobel Prize. At the same time, it documents some of the<br />

highlights in the development of molecular biology.<br />

FEBS<br />

I became aware of FEBS (Federation of European Biochemical<br />

Societies) through their early meetings held in Warsaw (1966),<br />

Oslo (1967), and Prague (1968). These meetings provided<br />

excellent opportunities for a ‘‘beginner’’ to follow novel


310<br />

Fig. 5. Analytica 1982: With my wife at the Analytica reception.<br />

H. FELDMANN<br />

developments in biochemistry and molecular biology and to<br />

present his own results in short talks.<br />

In 1983, I was fortunate to be nominated by the Gesellschaft für<br />

Biologische Chemie (GBM) for membership in the Advanced<br />

Courses Committee (ACC) of FEBS. I took this post <strong>with</strong> pleasure,<br />

because I felt in absolute agreement <strong>with</strong> the main objective of<br />

FEBS that since its foundation in 1964 has been ‘‘to advance basic<br />

research and education in biochemistry, molecular and cellular<br />

biology, and molecular biophysics on a European level.’’ My<br />

predecessor as chairman of the ACC was Giorgio Bernardi, who<br />

succeeded in continuously raising the number of courses held per<br />

year from only a few in the beginning to more than a dozen,<br />

before he had to retire from this duty in 1986. I remember my<br />

first participation to an ACC meeting that was held on the<br />

occasion of a lecture course in Maria Alm (Austria) on the<br />

Biochemistry of Ageing organized by Fritz Cramer and Brian<br />

Clark in 1984. In 1986, FEBS Council appointed me to become<br />

Giorgio’s successor. I took up this office in 1987 and was<br />

reappointed for two further 3-year periods in 1990 and 1993.<br />

I was lucky to work <strong>with</strong> a Committee the members of which<br />

were enthusiastic in contacting colleagues from all over Europe,


A LIFE WITH YEAST MOLECULAR BIOLOGY 311<br />

TABLE 1<br />

Awardees of the Prize Biochemical Analytics/<strong>Molecular</strong> Bioanalytics<br />

1980 Fred Sanger and Alain<br />

Coulson, Walter Gilbert<br />

and Alan Maxam<br />

1982 César Milstein and George<br />

Köhler<br />

Development of modern<br />

techniques for sequencing<br />

DNA<br />

Development of monoclonal<br />

antibodies<br />

1984 Ed Southern Development of the DNA<br />

hybridization technique:<br />

1986 Brigitte Wittmann-Liebold,<br />

Leroy Hood and<br />

M.W. Hunkapiller<br />

‘‘Southern blot’’<br />

Development of methods and<br />

instrumentation for<br />

sequencing proteins at a micro<br />

scale<br />

1988 Charles Cantor and<br />

Development of pulsed field<br />

David Schwartz<br />

electrophoresis<br />

Sir Alec Jeffreys DNA fingerprinting<br />

1990 Karin Mullis and H.A. Erlich Development of the PCR<br />

1992 Jean Lawrence and<br />

David Ward<br />

technique<br />

Development and applications of<br />

non-radioactive highly<br />

sensitive in situ hybridization<br />

techniques<br />

1995 Gregory Winter Isolation of high affinity human<br />

antibodies directly from large<br />

1996 Mario Capecchi and<br />

Rudolf Jaenisch<br />

1998 Arthur B. Pardee (Dana-<br />

Farber Cancer Institute,<br />

Boston) and Peng Liang<br />

(Vanderbilt Cancer<br />

Center, Nashville<br />

Tennessee)<br />

2000 Franz Hillenkamp (Institut<br />

für Medizinische Physik<br />

und Biophysik, Münster)<br />

and Michael Karas<br />

(Institut für Chemie,<br />

Frankfurt/Main)<br />

synthetic repertoires<br />

In recognition of their<br />

pioneering work on the specific<br />

integration of DNA in<br />

mammalian cells and for<br />

establishing transgenes as a<br />

basic tool for research in<br />

molecular biology and<br />

medicine<br />

Development and applications of<br />

Differential Display<br />

Development of Matrix-Assisted<br />

Laser Desorption/Ionization<br />

Mass Spectrometry of<br />

Biopolymers, one of the<br />

essential technologies in<br />

genomics and proteomics


312<br />

H. FELDMANN<br />

who would be willing to run a FEBS Course. Though the funds for<br />

FEBS Courses were raised to 1 Mio Deutsche Mark per annum, we<br />

had to set certain limits for the amount of money given as a<br />

support to each course. So it was highly appreciated if organizers<br />

were able to invite co-sponsorship from other grant giving<br />

institutions. One particular advantage of running a FEBS Course,<br />

however, was that Youth Travel Grants were provided to assist<br />

attendance at these by younger scientists. As half of the FEBS<br />

Courses budget was designed for this purpose, up to 25% of the<br />

participants in a lecture course and all of the participants in a<br />

practical course could profit from this type of support. In<br />

accordance <strong>with</strong> FEBS’ general policy, fellowships were preferably<br />

awarded to young scientists from Eastern European countries, who<br />

otherwise would have had little chance to receive funds from their<br />

national institutions. Another aspect connected to this issue was<br />

that the ACC sought to invite colleagues from these countries to<br />

organize FEBS Courses at their home institutions, an encouragement<br />

that in fact paid out successfully. During my time as<br />

chairman, the ACC consisted of 10 members: eight colleagues from<br />

different Constituent Societies as well as the FEBS Secretary<br />

General and the FEBS Treasurer. This arrangement has been<br />

kept, but fortunately more colleagues from former Eastern<br />

countries became members of the ACC since. In all these years,<br />

the ACC received enough applications to sort out inappropriate<br />

ones. Priority was given to practical courses, because the<br />

committee felt that this type of venue would be of greatest benefit<br />

to young researchers who had no other opportunities to experience<br />

novel laboratory techniques or to learn techniques, which they<br />

wanted to apply in new projects. Thus the practical courses<br />

complete the intentions of the FEBS fellowships’ program. Indeed,<br />

some of the practical courses were so successful that the organizers<br />

and the ACC decided to repeat them, sometimes in subsequent<br />

years or in a series. I gratefully recollect that for one particular<br />

course the main organizer [Wilhelm Ansorge from EMBL<br />

(European <strong>Molecular</strong> <strong>Biology</strong> Laboratory)] repeatedly undertook<br />

to transfer all special equipment and instruments needed for this<br />

course to a place that had no supplies of this kind. The significance<br />

of the Advanced Courses Programme is also documented by the<br />

fact that students themselves, the Young Scientists movement,<br />

took the initiative to organize a successful series of courses entitled<br />

‘‘Young Scientists’ view of molecular biology and biotechnology.’’


A LIFE WITH YEAST MOLECULAR BIOLOGY 313<br />

Extraordinary venues I remember were two FEBS courses<br />

organized by Giorgio Bernardi, one in Cairo and one in Harare,<br />

Zimbabwe. He felt that students from African countries should<br />

profit from recent developments in Europe. In conjunction <strong>with</strong><br />

these courses Giorgio arranged for private tours <strong>with</strong> some<br />

colleagues (I think he was fond of traveling). As I shared his view<br />

to spend a few extra days on ones own expenses to see a country<br />

whenever one had an opportunity to visit it, I undertook an<br />

unforgettable tour from Cairo to Upper Egypt <strong>with</strong> Marianne<br />

Grunberg-Manago. In Harare, Marianne, Brian Clark and his<br />

wife, the wife of Francois Gros, and I rented an old Peugot and<br />

went cross-country for 10 days.<br />

Personally, I am most grateful to FEBS that they have<br />

supported the Spetses Summer Schools on <strong>Molecular</strong> <strong>Biology</strong><br />

(see below) from 1983 to present in co-sponsorship <strong>with</strong> NATO<br />

(North Atlantic Treaty Organization) and EMBO, and finally<br />

have decided to give full financial aid to these well-known venues<br />

together <strong>with</strong> EMBO. The years in FEBS were always exciting<br />

and enjoyable. I was glad to meet and to work <strong>with</strong> so many nice<br />

and enthusiastic colleagues from so many different countries,<br />

above all the members of the Executive (Figure 6) and the ACCs<br />

(Figure 7), but not to forget, the organizers of the FEBS Courses<br />

and the numerous student participants at courses which I had a<br />

chance to attend. I vividly remember the splendid and jovial<br />

atmosphere at the Committee meetings governed by hospitality<br />

and friendship and many exhilarating episodes that occurred at<br />

these occasions. At least I cannot repress one that happened when<br />

the ACC met in Amsterdam (Figure 7) and tell it <strong>with</strong> our host’s,<br />

Karel Wirtz from the University of Utrecht, own words [145]: ‘‘It<br />

also gave me a chance to make the committee members familiar<br />

<strong>with</strong> the capricious nature of Dutch wind and water. Having been<br />

asked to organize the meeting in Amsterdam a 60-feet sailing<br />

barge of the early 1900s was chartered (the whole enterprise<br />

turned out to be less expensive than a hotel). This ship offered a<br />

bunk for each member and a spacious room under deck where we<br />

could discuss and review the applications. Arrived on Friday late<br />

afternoon we sailed from Amsterdam harbour the next morning<br />

to cross the Ijsselmeer. During an 8-hour sailing trip we finished<br />

the agenda while a two-men crew made sure we reached the port<br />

of Hoorn at the north side of this large body of water. On Sunday<br />

morning we had to hoist the sails again to return to Amsterdam.


314<br />

H. FELDMANN<br />

Fig. 6. FEBS Executive Committee Meeting, Budapest 1990. Sitting: Prakash<br />

Datta and Doria Cavallini. Standing: <strong>Horst</strong> Kleinkauf, John Mowbray, Karl<br />

Decker, Guy Dirheimer, Vito Turk, <strong>Horst</strong> <strong>Feldmann</strong>, and Carlos Gancedo.<br />

On our way back, the wind had picked up to force 7 while heavy<br />

showers tested our endurance, <strong>Horst</strong> being in the kitchen to<br />

prepare lunch, lost his balance to become encased knee deep in<br />

macaroni. Somehow he still managed to produce a tasty meal.’’<br />

He forgot to mention that the ship just went about <strong>with</strong>out a<br />

warning. It was a pleasant feeling to know that the ACC got in<br />

best hands in 1996 <strong>with</strong> Karel as my successor.<br />

In a way, I miss all these activities, but I am grateful that despite<br />

my retirement I still have an opportunity to keep contact <strong>with</strong><br />

many friends from my time at FEBS. In 1995, I was awarded the<br />

FEBS Ferdinand Springer Lecture Tour that offered the splendid<br />

opportunity to visit a number of Institutes around Europe and to<br />

talk about my current scientific work. Since 1995 I am acting as an<br />

Editor to FEBS Letters, the journal founded in 1968 by Prakash<br />

Datta for rapid publication of relevant novel reports and reviews<br />

in biochemistry, biophysics, molecular biology, and related topics;<br />

Giorgio Semenza, then Managing Editor of FEBS Letters, brought<br />

me in. In 2003, FEBS gave me an opportunity to finish a book<br />

Forty Years of FEBS – 1964 to 2003 – a Memoir [145], which was


A LIFE WITH YEAST MOLECULAR BIOLOGY 315<br />

Fig. 7. ACC Meeting, Amsterdam 1992. On a sailing tour on the IJsselmeer.<br />

From left to right: Julio Celis, <strong>Horst</strong> <strong>Feldmann</strong>, John Mowbray, Slobodan<br />

Barbaric, Vito Turk, Paulette Vignais, and Thanos Evangelopoulos.<br />

presented at the 40th Anniversary of FEBS celebrated at the<br />

FEBS Congress 2004 in Warsaw.<br />

Spetses Summer Schools<br />

The Greek island of Spetses is the place I had a chance to visit<br />

more often than any other one in beautiful Greece; in fact, I can<br />

call it ‘‘my second home.’’ I immediately fell in love <strong>with</strong> the<br />

island when I was admitted as a participant to the 3rd NATO<br />

Advanced Study Institute held there in 1969.<br />

Actually, Marianne Grunberg-Manago had started this series of<br />

International Summer Schools on <strong>Molecular</strong> <strong>Biology</strong> in 1966 and<br />

through her untiring initiative [146] the Schools have been kept<br />

as a series of well-known annual lecture courses until to date.<br />

There was a college (Anargyrios and Korgialenios School) large<br />

enough to accommodate students and a hotel at a short distance<br />

from it both of them adjacent to a good beach. The island was<br />

small enough to facilitate contacts between students and<br />

professors and it was large enough to provide peace and quiet.


316<br />

H. FELDMANN<br />

Fig. 8. Participants to the Spetses Summer School on <strong>Molecular</strong> <strong>Biology</strong> in<br />

1992.<br />

My active involvement in the Spetses Summer Schools dates<br />

back to the year 1970/1971. Hans Zachau was asked to organize<br />

the third School in order to bring in the Germans as a third party<br />

and to make the School an annual event, the directorship being<br />

rotated regularly between France, England, and Germany. (For<br />

some interval, the directorship has included Tom Caskey<br />

(Houston) and John Hershey (Davis) from the US to reach a<br />

4-yearly rotation.) From then on I helped Hans Zachau as one of<br />

the German co-organizers, and after 1988 I took over as a German<br />

organizer (Figure 8).<br />

Initially, the Spetses Summer Schools were sponsored exclusively<br />

by NATO. But their strict rules soon caused the organizers<br />

to apply for further grants from EMBO (sponsor since 1972), and<br />

also from FEBS (sponsor since 1983), as to allow to invite and<br />

support lecturers and students from non-NATO countries. In<br />

recent years, the School relied on financial support from EMBO<br />

and FEBS only. It may well be that some colleagues were<br />

skeptical that Spetses had been established as sort of a ‘‘club’’ and<br />

should not be funded. But the facts show that over the years<br />

nearly 500 (different!) renowned lecturers came to the island to


A LIFE WITH YEAST MOLECULAR BIOLOGY 317<br />

teach some 5,000 young pre- and post-doctoral researchers.<br />

Indeed, one can realize until to date that Spetses participants<br />

form a community, and I am still in contact <strong>with</strong> some of the<br />

students (particularly Russians) who attended the School several<br />

years back. To give an account on the Spetses’ activities, I<br />

compiled an overview at a website [147]. The topics dealt <strong>with</strong> in<br />

these venues reflect important moments in the development of<br />

molecular biology over the last 40 years. Thus, the intentions of<br />

these courses of familiarizing young researchers <strong>with</strong> novel<br />

insights and recent advances in this field completely met those<br />

of the grant-giving institutions.<br />

In 1996, I arranged for a 3-day Workshop to celebrate the 30th<br />

Anniversary of the Summer Schools at Spetses and was able to<br />

invite former organizers and lecturers of outstanding merit. As<br />

the authorities and the inhabitants of Spetses were proud and<br />

most grateful that they were selected to host an International<br />

Course of this calibre for so many years, all previous organizers<br />

were presented <strong>with</strong> a brass plaque by the Spetses Mayor to<br />

affirm their honorary citizenship. A similar venue was repeated<br />

successfully to celebrate the 40th Anniversary in 2006, organized<br />

by Brian Clark and myself. It was again a wonderful occasion that<br />

so many old companions were to meet many of whom had not<br />

seen each other for nearly 40 years. As I promised to Marianne,<br />

when she fell seriously sick, as long as I could to have an eye on<br />

Spetses and to engage in keeping the tradition of the School.<br />

Gene Technology<br />

I have already briefly recapitulated the story of recombinant<br />

DNA. In 1971 Cetus and in 1976 Genentech companies were<br />

founded. The first pharmaceutical products based on recombinant<br />

DNA were somatostatin (1977); insulin (1978); growth hormone<br />

(1979); and interferon (1980) (e.g. [148]). Also Suisse scientists<br />

and industries engaged early in gene technology. In Germany,<br />

however, the application of gene technology for industrial<br />

purposes lacked behind considerably, though we had little<br />

problems to get permission for cloning in the lab after the<br />

German guidelines had been worked out and published. For<br />

industry, there were two reasons for reluctance: (i) at the<br />

beginning, the bosses leading big German chemical or


318<br />

H. FELDMANN<br />

pharmaceutical firms publicly stated ‘‘y there is no need to<br />

engage in this doubtful enterprise, if it turns out promising, we<br />

will buy the know-how y’’; (ii) later, the first attempts to set up<br />

an industrial production (e.g. for human insulin in recombinant<br />

bacteria) failed as German authorities voted down a bill. In all<br />

honesty I have to say that fortunately the situation in<br />

biotechnology has changed thanks to the engagement from<br />

politics, research and industry, so that these days biotechnology<br />

has a good and respected standing world-wide.<br />

As I felt (fortunately not being the only one) that it was timely<br />

around the early 1980s to familiarize at least those people<br />

interested in the ‘‘chances and risks’’ of gene technology <strong>with</strong> the<br />

new developments, I accepted several invitations to discuss the<br />

relevant items <strong>with</strong> chemists, geneticist, pharmacists,<br />

medical doctors or even ‘‘laymen,’’ at congresses or privately<br />

(e.g. [149–151]). In 1981, German industry no longer could deny<br />

that gene technology was attractive. But except a few smaller<br />

companies, who showed a growing interest in adapting novel<br />

techniques, there was no sincere attempt from ‘‘in-house’’ to<br />

train their employees. Rather came an impetus from the<br />

Gesellschaft Deutscher Chemiker, who asked me in 1982 to<br />

organize an advanced vocational training course on ‘‘Methods<br />

and Results of Gene Technology’’ for some 20 participants at our<br />

institute. I could solicit the help of some of my junior colleagues<br />

(Fritz Fittler, Urs Hänggi, Peter Philippsen, Rolf Streeck, and<br />

Wolfgang Wintermeyer), but generous funding allowed me to also<br />

invite foreign lecturers. This course was offered and successfully<br />

repeated 3 times in the years after, until 1985. A remarkable<br />

feature was that there was a growing interest of patent attorneys<br />

in these courses. A number of large and well respected offices had<br />

been established in Munich, whose clientele recruited from<br />

renowned biotechnical companies world-wide, the reason being<br />

that the European Patent Office had been installed in Munich in<br />

1977. The contacts brought about by the courses stimulated<br />

several of our young doctoral students to start a career as patent<br />

attorneys as well (in all about 10).<br />

The courses on gene technology in Munich had raised the<br />

particular interest of Boehringer GmbH, who wanted to set up a<br />

similar advanced vocational training course for their staff, which<br />

we called ‘‘Novel Methods in Gene Technology.’’ With my good<br />

colleagues and friends Wolfram Hörz and Gustav Klobeck both


A LIFE WITH YEAST MOLECULAR BIOLOGY 319<br />

from our institute, we managed to familiarize the participants<br />

<strong>with</strong> the latest practical and theoretical developments in<br />

molecular biology and genetic engineering in 3-day courses. I<br />

remember we started this series in 1985 and repeated these<br />

annual venues at least 10 times, until 1995. These venues had<br />

arisen from the good relations we had <strong>with</strong> some influential<br />

colleagues from Boehringer Company. The enterprise was<br />

abruptly stopped when the firm was taken over by Roche to<br />

become ‘‘Roche Diagnostics’’ in 1998.<br />

A very pleasant cooperation <strong>with</strong> the German Society for<br />

Animal Husbandry was launched by <strong>Horst</strong> KräuXlich, the director<br />

of the Munich Institute of Animal Breeding. As the members of<br />

Deutsche Gesellschaft für Züchtungskunde (German Society for<br />

Animal Breeding) had a growing interest in learning the<br />

capabilities of recombinant DNA technology and had heard about<br />

our courses, they invited us to run a lecture course for them in<br />

1986. It was really satisfying to see that our seeding message was<br />

to bear fruit in the years to follow. The animal breeders<br />

successfully combined micro-injection of recombinant genes <strong>with</strong><br />

in vitro fertilization to pigs, cattle, sheep, and other domestic<br />

animals [152]. The DFG supported these activities by generous<br />

grants in a special program, whereby the applications of the single<br />

members had to be evaluated bi-annually and the forthcoming<br />

results to be presented in common sessions. It was always a<br />

pleasure for me to be accepted by these colleagues as an<br />

‘‘honorary animal breeder.’’<br />

Sonderforschungsbereich 190<br />

The DFG supported the research of our group during my entire<br />

time. In 1989, members of the Munich scientific community<br />

interested in mechanisms of gene activation sought a closer contact<br />

<strong>with</strong> each other. We wanted to build a forum that should foster a<br />

practical cooperation and a direct exchange of results and ideas and<br />

should overcome the disadvantage that the respective institutes<br />

were scattered throughout Munich. This was exactly the concept of<br />

the Sonderforschungsbereiche (SFBs), quite a number of which<br />

existed all over Germany. Prerequisites for funding were to present<br />

a timely and attractive theme and the willingness of up to 20 groups<br />

to cooperate for better or worse. The application presented to DFG


320<br />

by Herbert Jaeckle, then the new head of the Munich Institute of<br />

Genetics, Wolfram Hörz from our institute and myself was accepted<br />

and financing started in 1990. The responsibility for smooth rolling<br />

was laid in my hands as chairman of SFB190 in consecutive 3-year<br />

periods (from 1990 through 1998), and Wolfram Hörz was elected<br />

my successor for the fourth period (the maximal life-time for an<br />

SFB, until the end of 2001). An ongoing problem was to catch the<br />

attention of new groups whenever current members dropped out.<br />

Many of the group leaders left Munich as they had been offered<br />

chairs in other universities or directorships at foreign Max-Planck-<br />

Institutes, and in order to keep a ‘‘critical mass’’ these groups had<br />

to be replaced by newcomers. But we succeeded to solve this<br />

problem as Munich was an attractive place which helped recruitment<br />

of capable colleagues.<br />

Other Encounters<br />

H. FELDMANN<br />

Before I engaged in committees, boards, or in the organization of<br />

international meetings myself, I was attending several venues<br />

Hans Zachau had initiated and organized as chairman [144].<br />

Together <strong>with</strong> members from the Russian Academy of Sciences he<br />

started the series of German–Russian Symposia, <strong>with</strong> the first<br />

bilateral conference held in Munich in 1976. The continuation of<br />

these venues for over 20 years opened the extravagant chance for<br />

me to visit several interesting places in Russia and the former<br />

Soviet Republic. On the Russian side, the symposia were<br />

organized by scientists from the Engelhardt Institute of <strong>Molecular</strong><br />

<strong>Biology</strong> in Moscow. The meetings always started <strong>with</strong> a<br />

short stay in Moscow and from there the participants were taken<br />

by air plane to the various locations the organizers had chosen.<br />

Every time Tatiana Venkstern, a scientist from the Engelhardt<br />

Institute, was responsible to take care of us and to act as our<br />

motherly travel marshal. All these visits (Zagorsk, Erevan, and<br />

Armenia, 1981; Irkutsk and Lake Baikal, 1989; Suzdal, Vladimir,<br />

and Riga, 1993), but also the friendship <strong>with</strong> Tatiana, left<br />

unforgettable moments in my life. Through these tours, I realized<br />

how difficult life for the majority of the population was those<br />

years and what I could personally do to alleviate the frustrating<br />

situation our Russian colleagues had to struggle <strong>with</strong>. One late<br />

compensation consisted in the possibility to raise money from the


A LIFE WITH YEAST MOLECULAR BIOLOGY 321<br />

German Volkswagen-Foundation to start a fruitful cooperation<br />

<strong>with</strong> Vadim Karpov’s group from the Engelhardt Institute in<br />

Moscow [133].<br />

My engagements in immediate duties, in faculty or university<br />

affairs have been mentioned above. Commitments at the national<br />

level included services to the DFG (as a member of many panels of<br />

experts), the Alexander v. Humboldt-Foundation and the German<br />

Studienstiftung. I always kept good relations <strong>with</strong> EMBO after I<br />

had been elected EMBO member in 1979. My activity for the<br />

German Society for Biochemistry and <strong>Molecular</strong> <strong>Biology</strong> (GBM)<br />

largely concentrated on collaboration <strong>with</strong> them during my time<br />

as Secretary for the Analytica. But I am proud that the GBM logo<br />

I designed for them 30 years back is still in use.<br />

What concerns my international commitments, not mentioned<br />

above, I acted for some years (1993–1997) as an advisor for<br />

the German-Israeli Cooperation Programme in Biotechnology<br />

(DISNAT) maintained on the German side by the Ministry of<br />

Research and Technology. Very pleasant memories are connected<br />

to many events I was invited to by my French colleagues, better to<br />

say friends. They had noticed that I was able to follow lectures<br />

and discussions in their own language. This permitted me to<br />

serve as examiner for several thèse de troisième cycle and<br />

qualification pour l’enseignement supérieur at University Louis<br />

Pasteur in Strasbourg, or in evaluations of CNRS programs at<br />

Gif-sur-Yvette. When the French yeast community started<br />

their Génolevures program, a project aimed at the ‘‘Genomic<br />

exploration of the Hemiascomycetous <strong>Yeast</strong>s,’’ I was happy to help<br />

Jean-Luc Souciet from Strasbourg who is acting as a coordinator<br />

of the Génolevures project [153]. Since then I have been<br />

invited to their meetings in Paris or Strasbourg, which I consider<br />

a very selfless gesture supporting our long-lasting friendly<br />

relationships.<br />

Epilogue<br />

Contrary to many colleagues whose personal recollections I read<br />

<strong>with</strong> great interest, I have to confess that I never enjoyed the close<br />

guidance by teachers belonging to particular academic schools.<br />

This does not exclude that being trained as a chemist I never gave<br />

up to look at the world in a sense of chemistry – at least <strong>with</strong> one


322<br />

H. FELDMANN<br />

eye. This perception was intensified by several chances to meet<br />

eminent scientists at the Lindau Nobel Prize Meetings during my<br />

time at university. My wife and I still keep good memories of the<br />

4th Meeting of Awardees in chemistry in 1961. A treasure for me<br />

is the reprint of a remarkable essay by J.H. van’t Hoff explaining<br />

the value of ‘‘Imagination in Science’’ which my scientific<br />

‘‘grandfather’’, Richard Kuhn, had edited and handed out to the<br />

students [154].<br />

From my childhood on I was used to grasp and accept what I felt<br />

was interesting or suitable for me, be it knowledge, reflections,<br />

experiences, skills, or obligations. So I am deeply thankful to all<br />

people who have contributed to my development in one or the<br />

other way, in more or less intense connections. This does not<br />

imply that I was always prepared to adopt their opinions or way of<br />

action, particularly of those who in my eyes displayed attitudes<br />

unacceptable for me.<br />

Of course, my gratitude includes all my gifted and motivated<br />

co-workers, some of whom I cited by names above, but also those<br />

who have not been mentioned explicitly. Our lab always was an<br />

assembly of chemists, biologists, medical students, and technicians,<br />

individualists originating from regions all over Germany.<br />

More splashes of color were contributed by people coming from<br />

various nationalities for different but often overlapping periods of<br />

time. In this respect I remember: Hermann Falter, a Bavarian-<br />

Canadian postdoc; Erwin Meixner, an Austrian PhD student;<br />

Giuseppe Pirro (Pino), an Italian post-doc from Modena; Antonin<br />

Eigel, a Czech immigrant; Anni Fradin, a student from Bretagne<br />

who lost her supervisor in Gif-sur-Yvette and worked for her<br />

dissertation in my lab on tRNAMet and methylation in yeast; Noel<br />

Deering, an Irish technician; Rick Baker, an American post-doc<br />

coming <strong>with</strong> a Humboldt stipend; Pamela Smith, a British<br />

secretary fluent in German, Italian, and Spanish; and Vadim<br />

Karpov <strong>with</strong> Olga Preobrashinskaia and two students, all coming<br />

from the Moscow Engelhardt Institute to collaborate <strong>with</strong> us<br />

on Rpn4.<br />

The same gratitude applies to all colleagues <strong>with</strong> whom I shared<br />

my daily life during my time at the Munich institute, which was<br />

like a safe haven for me. They helped me in scientific as well as in<br />

personal affairs. I do not repeat that I enjoyed to get acquainted<br />

<strong>with</strong> so many people outside the institute, some of them becoming<br />

collaborators or real friends. Even if there will be little chance to


A LIFE WITH YEAST MOLECULAR BIOLOGY 323<br />

meet one or the other of them again, they are alive in my memory.<br />

It is them who have to decide on the quality of my endeavor.<br />

Privately, my family was my best support and place of refuge,<br />

although they may not have realized this during the time I was<br />

busy or away from home. As said my wife gave birth to two<br />

daughters, and initially I was disappointed not to have a son. But<br />

I soon comprehended that daughters are much more devoted to a<br />

father than sons can be. Fortunately my wife took care of the<br />

children in any situation in life, which granted me a feeling of<br />

independence. Otherwise I feel lucky that they share one or the<br />

other of my interests: both of them loved and performed<br />

(classical) music and participated as supernumeraries in opera<br />

or ballett. Barbara before she took up and finished medicine was<br />

educated and got a diploma as a ballett dancer, Miriam is fond of<br />

fine arts, languages, and gardening.<br />

As a zoon politicon I never became a member of a political party,<br />

because such an interest had been spoiled for me radically by my<br />

experiences as a youngster. Not even could I accept to be<br />

monopolized by an interest group whose policy I did not agree<br />

<strong>with</strong> or to be sqeezed into a corset hierarchy; though in German<br />

university one has still to deal <strong>with</strong> this habitude, the most<br />

miserable outcome being a condescending attitude of some staff<br />

people towards their ‘‘subordinates.’’<br />

Like many other things doing science is fun. Whenever<br />

somebody has developed a liking for science, I feel he will stick<br />

to it for ever. I found this notion expressed in all recollections of<br />

scientists I read thus far: pursuing scientific research gives<br />

satisfaction and pleasure. Indeed, this must be due to the fact that<br />

a scientist enjoys many privileges. As an occupation it bears its<br />

challenges, joys but also disappointments. I hope my recollections<br />

preferably mirror the pleasant aspects, because these are best to<br />

remember and to forget about the rest.<br />

Die Erinnerung ist das einzige Paradies aus dem wir nicht vertrieben<br />

werden können.<br />

ACKNOWLEDGMENT<br />

Jean Paul<br />

I wish to thank Giorgio Semenza for critical reading of the<br />

manuscript.


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