Giri Narasimhan

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Improved TracebackGAATTCAGTTA000000000000G011 1 1 1 1 11 1 1 1G011111112 2 2 2A0112 2 2 222223T01 2233 3 3 3333C0122334 4 4 4 4 4G012233445 5 5 5A0123334555561/29/08 CAP5510 32
Improved TracebackGAATTCAGTTA000000000000G011 1 1 1 1 11 1 1 1G011111112 2 2 2A0112 2 2 222223T01 2233 3 3 3333C0122334 4 4 4 4 4G012233445 5 5 5A0123334555561/29/08 CAP5510 33
Page 1 and 2: CAP 5510: Introduction to Bioinform
Page 3 and 4: Sequence Alignment - Why?>gi|126435
Page 5 and 6: Implications of Sequence AlignmentM
Page 7 and 8: PDGF and v-sis One region of 31 ami
Page 9 and 10: Sequence Alignment>gi|4505680|ref|N
Page 11 and 12: Similarity vs. HomologyHomologous s
Page 13 and 14: Types of Sequence Alignments - 2Sem
Page 15 and 16: Why gaps?Example: Finding the gene
Page 17 and 18: BLAST & FASTAFASTA[Lipman, Pearson
Page 19 and 20: BLAST Strategy & ImprovementsLipman
Page 21 and 22: BLAST Variants Nucleotide BLASTStan
Page 23 and 24: BLAST Credits Stephen Altschul Jona
Page 25 and 26: Rules of Thumb Most sequences with
Page 27 and 28: Types of Sequence AlignmentsGlobalH
Page 29 and 30: Global Alignment:An exampleV: G A A
Page 31: Alternative TracebackV: G - A A T T
Page 36 and 37: Generalizations of Similarity Funct
Page 38 and 39: Local Sequence Alignment Example: c
Page 40 and 41: Local Alignment: ExampleGAATTCAGTTA
Page 42 and 43: How to score mismatches?1/29/08 CAP

Giri Narasimhan

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