The genetics Package

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32 order.genotypeorder.genotypeOrder/sort genotype/haplotype objectDescriptionUsageOrder/sort genotype or haplotype object according to order of allele names or genotypes## S3 method for class 'genotype':order(..., na.last=TRUE, decreasing=FALSE,alleleOrder=allele.names(x), genotypeOrder=NULL)## S3 method for class 'genotype':sort(x, decreasing=FALSE, na.last=NA, ...,alleleOrder=allele.names(x), genotypeOrder=NULL)genotypeOrder(x)genotypeOrder(x)
order.genotype 33Value<strong>The</strong> same as in order or sortAuthor(s)See AlsoGregor Gorjancgenotype, allele.names, order, and sortExamplesx
Page 1 and 2: The genetics PackageFebruary 16, 20
Page 3 and 4: HWE.exact 3See AlsoHWE.exact, HWE.t
Page 5 and 6: HWE.test 5## S3 method for class 'd
Page 7 and 8: LD 7UsageLD(g1, ...)## S3 method fo
Page 9 and 10: ci.balance 9# Compute LD table for
Page 11 and 12: diseq 11Usagediseq(x, ...)## S3 met
Page 13 and 14: expectedGenotypes 13Examplesexample
Page 15 and 16: genotype 15DescriptionUsagegenotype
Page 17 and 18: genotype 17that appear in the data,
Page 19 and 20: genotype 19m4
Page 21 and 22: groupGenotype 21retval$missprobComp
Page 23 and 24: groupGenotype 23Examples## --- Setu
Page 25 and 26: homozygote 25Argumentsxgenotype obj
Page 27 and 28: locus 27is.marker(x)## S3 method fo
Page 29 and 30: makeGenotypes 29example.data
Page 31: makeGenotypes 31test1replace=TRUE),
Page 35 and 36: power.casectrl 35See Alsogenotype,
Page 37 and 38: print.LD 37print.LDTextual and grap
Page 39 and 40: summary.genotype 39data
Page 41 and 42: undocumented 41Examplesexample.data
Page 43 and 44: Index∗Topic IOwrite.pop.file, 41
Page 45: INDEX 45write.marker.file(write.pop

The genetics Package

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