Molecular Modeling & Simulation - Nano Mahidol - Mahidol University

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ValidationHomology modellingStructure Validation Servers• WhatIf Web Server - http://www.cmbi.kun.nl:1100/WIWWWI/• Biotech Validation Suite - http://biotech.ebi.ac.uk:8400/cgi-bin/sendquery• Verify3D - http://www.doe-mbi.ucla.edu/Services/Verify_3D/• VADAR - http://redpoll.pharmacy.ualberta.caStructure Validation Programs• PROCHECK - http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html• PROSA II - http://lore.came.sbg.ac.at/People/mo/Prosa/prosa.html• VADAR - http://www.pence.ualberta.ca/ftp/vadar/• DSSP – http://www.embl-heidelberg.de/dssp/ValidationProcheckHomology modellingIssara Sramala
Page 4: Atomistic Model• Quantum Mechanic
Page 8 and 9: Molecular MechanicsNanoscience Mahi
Page 10 and 11: Molecular MechanicsMolecular Modeli
Page 12 and 13: Molecular MechanicsNanoscience Mahi
Page 14 and 15: Molecular MechanicsMolecular Modeli
Page 17: Wire FrameMolecular ModelingBPTIPro
Page 20 and 21: Line RibbonMolecular ModelingBPTIPr
Page 22 and 23: Model & MethodMolecular ModelingMOD
Page 24 and 25: HomologyBasic Steps in Homology Mod
Page 26 and 27: 2. AlignmentHomology modellingIssar
Page 28 and 29: Generate Core CoordinatesHomology m
Page 32 and 33: 4. Energy MinimizationBad modelsHom
Page 36 and 37: Molecular SimulationMolecular Model
Page 38 and 39: Molecular DynamicsMolecular Modelin
Page 40 and 41: Bt Cry4B Pore FormationMolecular Mo
Page 43 and 44: Simulation in WaterMolecular Modeli
Page 45: Bt Cry4B in WaterMolecular Modeling

Molecular Modeling & Simulation - Nano Mahidol - Mahidol University

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