AFNI Jewel Box AKA Tool Box, Treasure Chest or Miscellaneous Tools

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-26-Miscellaneous Visualization Tools aivAFNI Image Viewer programaiv ~/abin/splash_earth.jpg &o plugin: Render[new] Interactive volume renderingo plugin: Dataset#N Graph extra dataset time series in AFNI graph viewer
-27-Group Dataset Statistical Analysis Programs3dttest3dANOVA3dANOVA23dANOVA3GroupAna3dFriedman3dKruskalWallis3dWilcoxon3dMannWhitney3dRegAna3dFDRAlphaSimPaired and unpaired t-tests1-way ANOVA (fixed effects)2-way ANOVA (fixed, random, mixed effects)3-way ANOVA (fixed, random, mixed effects)n-way ANOVA - 1 to 5 ways (Matlab script)Nonparametric Friedman test for randomized completeblock design experimentsNonparametric Kruskal-Wallis test for comparison of multipletreatmentsNonparametric Wilcoxon test signed-rank test for pairedcomparisons of two samplesNonparametric 3dMannWhitney two-sample testVoxel-wise multiple linear regression group analysisFalse Discovery Rate analysis for thresholding of voxelwisestatisticsAlpha probability simulations for Monte Carlo analysisof clusters
Page 1 and 2: -1-AFNI Jewel BoxAKA Tool Box, Trea
Page 3 and 4: -3-• Auxiliary Programs for Datas
Page 5 and 6: -5-o 3dcalc Voxel-by-voxel general
Page 7 and 8: -7-Simple statistics on datasetso 3
Page 9 and 10: -9-Spatial sharpeningfilter options
Page 11 and 12: -11-3D+time Pre-Processing Programs
Page 13 and 14: -13-• Dataset Histogram Programs
Page 15 and 16: -15-ROI Generation and Usage Progra
Page 17 and 18: -17-Dataset File Utilities• 3dinf
Page 19 and 20: -19-• Programs for Changing Datas
Page 21 and 22: -21-Volume Segmentation Tools3dIntr
Page 23 and 24: -23-Spatial Utilities• 3dclust --
Page 25: -25-• Image Registration Programs
Page 29 and 30: -29-Scripts@SUMA_Make_Spec_FS - con
Page 31 and 32: -31-Scripts (continued)@Center_Dist
Page 33 and 34: -33-GyrusFinderSemi-automatic white
Page 35 and 36: -35-Environment Variables and .afni
Page 37 and 38: -37-AFNI GUI Plugouts and command l
Page 39: -39-ACE ExamExamination to become a

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