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BLAT, Step 3:<br />
Identifying homologous<br />
regions<br />
Exclude common k-words<br />
For all k-words from query<br />
– find out the position in db<br />
For results (qpos, dbpos):<br />
– split into buckets (64kbp)<br />
1)Preprocess<br />
2)Scan<br />
3)Extend<br />
– sort on the diagonal (diag=qposdbpos)
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