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BLAT, Step 3:<br />
Identifying homologous<br />
regions<br />
continued...<br />
1)Preprocess<br />
2)Scan<br />
3)Extend<br />
– from diagonally close hits (gap<br />
limit) create “pre-clusters”<br />
– sort each “pre-cluster” on dbpos<br />
– create clusters from close hits<br />
– run Local Alignment for each<br />
cluster
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