Supporting Information (SI) Appendix - Proceedings of the National ...

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Cultivar A Cultivar B IBD Z0 Z1 Reference Barbableu (DVIT 1651) Olivette Noir (DVIT 1306) 0.617 0.048 0.67 GRIN Cereza (DVIT 2907) Pais (DVIT 484) 0.515 0.104 0.763 * Cereza (DVIT 2907) Muscat of Alexandria (DVIT 841) 0.565 0.054 0.763 * CG 1481 (DVIT 2432) Thompson Seedless (DVIT 535) 0.572 0.057 0.742 GRIN Chardonnay (DVIT 687) Pinot Noir (DVIT 915) 0.518 0.037 0.89 * Clotilde Prosperi (DVIT 568) Italia (IP 65) (DVIT 577) 0.53 0.048 0.843 GRIN Durif (DVIT 895) Syrah (DVIT 1053) 0.546 0.081 0.747 * Ehrenfelser (DVIT 2317) White Riesling (DVIT 1015) 0.593 0.088 0.639 * Flora (DVIT 720) Semillon (DVIT 954) 0.548 0.071 0.763 GRIN Flora (DVIT 720) Gewurztraminer (DVIT 738) 0.608 0.055 0.674 GRIN French Colombard (DVIT 726) Chenin Blanc (DVIT 691) 0.478 0.086 0.873 GRIN Italia (DVIT 424) Muscat Hamburg (DVIT 860) 0.549 0.062 0.778 * Kerner (DVIT 3104) Frankenthal (DVIT 408) 0.495 0.079 0.852 GRIN Kerner (DVIT 3104) White Riesling (DVIT 1016) 0.513 0.077 0.819 GRIN Kishmish Of Vir (DVIT 2071) Black Kishmish (DVIT 1326) 0.602 0.054 0.689 GRIN Mueller-Thurgau (DVIT 2337) White Riesling (DVIT 1015) 0.502 0.121 0.754 * Mueller-Thurgau (DVIT 2337) Optima (DVIT 3105) 0.66 0.05 0.58 * Muscat Hamburg (DVIT 468) Frankenthal (DVIT 408) 0.517 0.051 0.865 GRIN Muscat of Alexandria (DVIT 841) Muscat Hamburg (DVIT 468) 0.54 0.048 0.825 GRIN Muscat of Alexandria (DVIT 841) Sultana Moscata (DVIT 527) 0.553 0.044 0.807 * NA (PI 588425.02) Sylvaner (DVIT 968) 0.5 0.06 0.879 GRIN NA (PI 588668.04) Ezerjo (DVIT 715) 0.532 0.109 0.717 GRIN Petite Bouschet (DVIT 894) Alicante Bouschet (DVIT 625) 0.495 0.074 0.862 GRIN Pinot (DVIT 733) Gamay Burgoyne (DVIT 734) 0.478 0.081 0.882 * Pinot (DVIT 733) Chardonnay (DVIT 687) 0.517 0.03 0.906 * Plavac Mali (DVIT 1119) Zinfandel (DVIT 1340) 0.54 0.068 0.784 * Primiera (DVIT 491) Delizia Di Vaprio (DVIT 571) 0.554 0.087 0.718 GRIN Red Veltliner (DVIT 928) Rothgipfler (DVIT 935) 0.51 0.07 0.84 * Reichensteiner (DVIT 3107) Mueller Thurgau (DVIT 2337) 0.544 0.054 0.805 GRIN Rothgipfler (DVIT 935) Traminer (DVIT 991) 0.552 0.084 0.728 * Ruby Seedless (DVIT 2625) Sultana Moscata (DVIT 527) 0.541 0.077 0.765 * Schonburger (DVIT 1124) Pinot Noir (DVIT 1066) 0.556 0.033 0.821 GRIN Seedless Emperor (DVIT 2759) Ruby Seedless (DVIT 2625) 0.551 0.075 0.748 **
Sovrana (DVIT 525) Delizia Di Vaprio (DVIT 571) 0.508 0.087 0.81 GRIN Sovrana (DVIT 525) Frankenthal (DVIT 408) 0.559 0.035 0.814 GRIN Sultana Moscata (DVIT 527) Thompson Seedless (DVIT 535) 0.513 0.105 0.765 * Sylvaner (DVIT 1075) Traminer (DVIT 991) 0.479 0.094 0.855 * Syrah (DVIT 1053) Durif (DVIT 895) 0.546 0.081 0.747 * Thomuscat (DVIT 536) Muscat of Alexandria (DVIT 841) 0.55 0.082 0.737 GRIN Thomuscat (DVIT 536) Thompson Seedless (DVIT 535) 0.552 0.072 0.751 GRIN Touriga (DVIT 990) Tarrango II (DVIT 2658) 0.466 0.078 0.911 * Trieste-pirovano 299 (DVIT 2164) Moscato Dadda (DVIT 2109) 0.536 0.103 0.722 GRIN Zweigelt-rebe (DVIT 2692) Limberger (Blaufraenkisch) (DVIT 797) 0.494 0.074 0.864 * Table S2: Confirmation of parent-offspring pairs established by other sources. Each row represents a previously described parent-offspring relationship, the reference for which is provided in the “Reference” column. The term “GRIN” in the Reference column refers to the Germplasm Resource Information Network (http://www.ars-grin.gov/). The asterisk in the Reference column refers to Sefc et al. [4]. Cultivar names are shown and GRIN IDs are provided in parentheses. The IBD and Z scores are shown. The lowest IBD score from this table (IBD = 0.466) was used as a lower bound for defining first degree relationships between pairs of accessions in the present data set. The lowest Z1 score (0.580) and the highest Z0 score (0.121) were used as thresholds for defining “likely parent-offspring” pairs in our sample.
Page 1 and 2: Supporting Information (SI) Appendi
Page 3 and 4: Authenticity of Vitis vinifera subs
Page 5 and 6: Figure S2: Evalution of domesticati
Page 7 and 8: Figure S4: GWA result for grape col
Page 9 and 10: Figure S6: The inter-SNP distance d
Page 11 and 12: Figure S8: Evaluation of authentici
Page 13: Supplementary Tables Vitis vinifera
Page 17 and 18: 382) Corniola (DVIT 3162) Muscat of
Page 19 and 20: 2684) (DVIT 1326) Ribier (DVIT 503)
Page 21 and 22: Cultivar Clones 030-33 (DVIT 1796)
Page 23 and 24: Argant (DVIT 2305) Arhaniotico Koki
Page 25 and 26: Barmak Isium (DVIT 310) Barone Dell
Page 27 and 28: Blauer Spatburgunder (DVIT 661) Blu
Page 29 and 30: Cardinal (DVIT 370) Carignane (DVIT
Page 31 and 32: Chasselas Dore (DVIT 689) Chasselas
Page 33 and 34: Chasselas Tokay (DVIT 377) Chassela
Page 35 and 36: Dermatas (DVIT 572) Diamente Nero (
Page 37 and 38: Folle Noire (DVIT 725) Fort Ross Vi
Page 39 and 40: Gewurztraminer (DVIT 740) Ghlicopat
Page 41 and 42: Hunisa (DVIT 418) Husseine (DVIT 42
Page 43 and 44: Karadzhandal (DVIT 2323) Karistino
Page 45 and 46: Kleinberger (DVIT 776) Klusaine Red
Page 47 and 48: Late Blue Burgundy (DVIT 793) Pinot
Page 49 and 50: Maria Pirovano (DVIT 588) Markandi
Page 51 and 52: Moscato Jesus (DVIT 2062) Moscato M
Page 53 and 54: Muscat Galego (DVIT 859) Muscat Gro
Page 55 and 56: Muscat of Alexandria (DVIT 841) Ivi
Page 57 and 58: NA (PI 588326.03) NA (PI 588425.02)
Page 59 and 60: Olivette Noir (DVIT 1306) Olivette
Page 61 and 62: Petrolianos (DVIT 899) Peverella (D
Page 63 and 64: Pinot Noir (DVIT 914) Pinot Noir (D
Page 65 and 66:
Poet Matabon (DVIT 1597) Poet Matab
Page 67 and 68:
Red Veltliner (DVIT 928) Ree (DVIT
Page 69 and 70:
Royal E (DVIT 506) Royal Thompson (
Page 71 and 72:
Sciacarello (DVIT 1125) Montanaccio
Page 73 and 74:
Smederevka (DVIT 1074) Prokupac (DV
Page 75 and 76:
Tabyrn (DVIT 969) Tadone (DVIT 970)
Page 77 and 78:
Tokay (DVIT 2157) Tokay (DVIT 540)
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Van Der Laan (DVIT 543) Velana (DVI
Page 81 and 82:
White Riesling (DVIT 1015) White Ri
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egion country USDA ID latitude long
Page 85 and 86:
Supplementary Methods Genotype data
Page 87 and 88:
in cultivar naming. The present dat
Page 89 and 90:
Figure S8, which includes only west
Page 91 and 92:
the eastern sylvestris is more ques
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