Supporting Information (SI) Appendix - Proceedings of the National ...

In conclusion, we acknowledge that the identification of true sylvestris presents significant
challenges to robustly testing hypotheses about the domestication of the grape and that any
conclusion drawn based on data from “sylvestris” samples should be interpreted with caution.
References
1. Atwell S, Huang YS, Vilhjalmsson BJ, Willems G, Horton M, et al. (Nature) Genome-wide association
study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature advance online publication.
2. Palaisa K, Morgante M, Tingey S, Rafalski A (2004) Long-range patterns of diversity and linkage
disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep.
Proceedings of the National Academy of Sciences of the United States of America 101: 9885-
9890.
3. Myles S, Chia J-M, Hurwitz B, Simon C, Zhong GY, et al. (2010) Rapid Genomic Characterization of the
Genus Vitis. PLoS ONE 5: e8219.
4. Sefc KM, Pejic I, Maletic E, Thomas MR, Lefort F (2009) MICROSATELLITE MARKERS FOR GRAPEVINE:
TOOLS FOR CULTIVAR IDENTIFICATION & PEDIGREE RECONSTRUCTION. In: Roubelakis-Angelakis
KA, editor. Grapevine Molecular Physiology & Biotechnology. 2nd ed: Springer.
5. Di Vecchi-Staraz M, Laucou V, Bruno G, Lacombe T, Gerber S, et al. (2009) Low Level of Pollen-
Mediated Gene Flow from Cultivated to Wild Grapevine: Consequences for the Evolution of the
Endangered Subspecies Vitis vinifera L. subsp. silvestris. J Hered 100: 66-75.
6. This P, Lacombe T, Thomas MR (2006) Historical origins and genetic diversity of wine grapes. Trends
Genet 22: 511-519.
7. Olmo H (1995) Grapes. In: Smartt J, Simmonds N, editors. Evolution of Crop Plants. 2 ed. New York:
Longman. pp. 485-490.
8. Grassi F, Labra M, Imazio S, Spada A, Sgorbati S, et al. (2003) Evidence of a secondary grapevine
domestication centre detected by SSR analysis. Theoretical and Applied Genetics 107: 1315-
1320.
9. Arroyo-García R, Ruiz-Garcia L, Bolling L, Ocete R, Lopez MA, et al. (2006) Multiple origins of cultivated
grapevine (Vitis vinifera L. ssp. sativa) based on chloroplast DNA polymorphisms. Molecular
Ecology 15: 3707-3714.
10. Grassi F, De Mattia F, Zecca G, Sala F, Labra M (2008) Historical isolation and Quaternary range
expansion of divergent lineages in wild grapevine. Biological Journal of the Linnean Society 95:
611–619.
11. Zohary D, Hopf M (2000) Domestication of Plants in the Old World. New York: Oxford University
Press.
12. Reich D, Thangaraj K, Patterson N, Price AL, Singh L (2009) Reconstructing Indian population history.
Nature 461: 489-494.