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Analysis of Lemur Scent Using the zNose - Electronic Sensor ...

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http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

<strong>Analysis</strong> <strong>of</strong> <strong>Lemur</strong> <strong>Scent</strong><br />

<strong>Using</strong> <strong>the</strong> <strong>zNose</strong> ®<br />

Edward J. Staples, <strong>Electronic</strong> <strong>Sensor</strong> Technology<br />

<strong>Electronic</strong> Noses<br />

Conventional electronic noses (eNoses) produce a recognizable response pattern<br />

using an array <strong>of</strong> dissimilar but not specific chemical sensors. <strong>Electronic</strong> noses have interested<br />

developers <strong>of</strong> neural networks and artificial intelligence algorithms for some<br />

time, yet physical sensors have limited performance because <strong>of</strong> overlapping responses<br />

and physical instability. eNoses cannot separate or quantify <strong>the</strong> chemistry <strong>of</strong> aromas.<br />

A new type <strong>of</strong> electronic nose, called <strong>the</strong> <strong>zNose</strong>®, is based upon ultra-fast gas<br />

chromatography, simulates an almost unlimited number <strong>of</strong> specific virtual chemical sensors,<br />

and can produce high-resolution two-dimensional olfactory images based upon<br />

aroma chemistry. The <strong>zNose</strong> ® is able to perform analytical measurements <strong>of</strong> volatile<br />

organic vapors and odors in near real time with part-per-trillion sensitivity. Separation<br />

and quantification <strong>of</strong> <strong>the</strong> individual chemicals within an odor is performed in seconds.<br />

<strong>Using</strong> a patented solid-state mass-sensitive detector, picogram sensitivity, universal nonpolar<br />

selectivity, and electronically variable sensitivity is achieved. An integrated vapor<br />

preconcentrator coupled with <strong>the</strong> electronically variable detector, allows <strong>the</strong> instrument to<br />

measure vapor concentrations spanning 6+ orders <strong>of</strong> magnitude. In this paper a portable<br />

<strong>zNose</strong>®, shown in Figure 1, was used to assess lemur scent chemistry.<br />

Figure 1- Portable <strong>zNose</strong>® technology incorporated into a handheld instrument<br />

1


http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

How <strong>the</strong> <strong>zNose</strong> Quantifies <strong>the</strong> Chemistry <strong>of</strong> Odors<br />

A simplified diagram <strong>of</strong> <strong>the</strong> <strong>zNose</strong> system shown in Figure 2 consists <strong>of</strong> two sections.<br />

One section uses helium gas, a capillary tube (GC column) and a solid-state detector.<br />

The o<strong>the</strong>r section consists <strong>of</strong> a heated inlet and pump, which samples ambient air.<br />

Linking <strong>the</strong> two sections is a “loop” trap, which acts as a preconcentrator when placed in<br />

<strong>the</strong> air section (sample position) and as an injector when placed in <strong>the</strong> helium section (inject<br />

position). Operation is a two step<br />

process. Ambient air (odor) is first sampled<br />

and organic vapors collected (preconcentrated)<br />

on <strong>the</strong> trap. After sampling <strong>the</strong><br />

trap is switched into <strong>the</strong> helium section<br />

where <strong>the</strong> collected organic compounds are<br />

injected into <strong>the</strong> helium gas. The organic<br />

compounds pass through a capillary column<br />

with different velocities and thus individual<br />

chemicals exit <strong>the</strong> column at characteristic<br />

times. As <strong>the</strong>y exit <strong>the</strong> column <strong>the</strong>y are<br />

detected and quantified by a solid state detector.<br />

An internal high-speed gate array microprocessor<br />

controls <strong>the</strong> taking <strong>of</strong> sensor<br />

data which is transferred to a user interface<br />

or computer using an RS-232 or USB connection.<br />

Odor chemistry, shown in Figure<br />

3, can be displayed as a sensor spectrum or<br />

a polar olfactory image <strong>of</strong> odor intensity vs<br />

2<br />

Figure 2- Simplified diagram <strong>of</strong> <strong>the</strong> <strong>zNose</strong><br />

showing an air section on <strong>the</strong> right and a helium<br />

section on <strong>the</strong> left. A loop trap preconcentrates<br />

organics from ambient air in <strong>the</strong><br />

sample position and injects <strong>the</strong>m into <strong>the</strong> helium<br />

section when in <strong>the</strong> inject position.<br />

retention time. Calibration is accomplished using a single n-alkane vapor standard. A<br />

library <strong>of</strong> retention times <strong>of</strong> known chemicals indexed to <strong>the</strong> n-alkane response (Kovats<br />

indices) allows for machine independent measurement and compound identification.<br />

Figure 3- <strong>Sensor</strong> response to n-alkane vapor standard, here C6-C14, can be<br />

displayed as sensor output vs time or its polar equivalent olfactory image.


http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

Chemical <strong>Analysis</strong> (Chromatography)<br />

The time derivative <strong>of</strong> <strong>the</strong> sensor<br />

spectrum (Figure 3) yields <strong>the</strong><br />

spectrum <strong>of</strong> column flux, commonly<br />

referred to as a chromatogram. The<br />

chromatogram response (Figure 4) <strong>of</strong><br />

n-alkane vapors (C6 to C14) provides<br />

a set <strong>of</strong> reference retention times.<br />

Graphically defined regions, shown<br />

as red bands, provide a method<br />

dependent reference time base against<br />

which subsequent chemical responses<br />

can be compared and indexed. As an<br />

example, a response midway between<br />

C10 and C11 would have a retention<br />

time index <strong>of</strong> 1050.<br />

Sensitivity<br />

Figure 4 - Chromatogram <strong>of</strong> n-alkane vapors C6 to C14).<br />

Measurement sensitivity is controlled by vapor sample time and SAW detector<br />

temperature. <strong>Using</strong> <strong>the</strong> variable sensitivity <strong>of</strong> <strong>the</strong> SAW detector it was possible to<br />

achieve ppb and even ppt sensitivity by lowering <strong>the</strong> detector temperature. It is also possible<br />

to prevent overloading by raising <strong>the</strong> temperature <strong>of</strong> <strong>the</strong> detector. The concentration<br />

in counts (peak area) <strong>of</strong> a typical volatile organic compound as a function <strong>of</strong> detector<br />

temperature is shown in figure 12.<br />

Figure 5- The exponential temperature dependence <strong>of</strong> SAW detector allows electronically variable sensitivity<br />

to be achieved over a wide range <strong>of</strong> vapor concentrations.<br />

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http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

<strong>Lemur</strong> <strong>Scent</strong><br />

Prosimians, which retain a suite <strong>of</strong> physical characteristics that have been lost in<br />

<strong>the</strong> "higher" primates (monkeys, apes and man), are <strong>the</strong> closest living analogs to man’s<br />

ancient primate ancestors who lived during <strong>the</strong> Eocene epoch (about 55 million years<br />

ago). Prosimians are <strong>of</strong>ten referred to as "lower"<br />

primates, as <strong>the</strong>y are simply characterized by<br />

retention <strong>of</strong> certain body systems that are primitive<br />

relative to those possessed by higher primates. For<br />

instance, prosimians tend to rely more heavily on<br />

<strong>the</strong> sense <strong>of</strong> smell. Male ring-tailed lemurs have<br />

darkly colored scent glands on <strong>the</strong> inside <strong>of</strong> <strong>the</strong>ir<br />

wrists with a spur-like fingernail, usually referred<br />

to as a horny spur, overlay on each. Males also<br />

have scent glands on <strong>the</strong>ir chests, just above <strong>the</strong><br />

collarbone and close to <strong>the</strong> armpit. Although prosimians<br />

are greatly olfaction-oriented, little is<br />

known about <strong>the</strong> specifics <strong>of</strong> how <strong>the</strong>y use scent to<br />

communicate<br />

Figure 6- Lumur.<br />

1 . In this preliminary study we<br />

examine 3 samples <strong>of</strong> gland secretions from<br />

lemurs using an ultra-high speed gas<br />

chromatograph. The results indicate that a portable<br />

electronic nose based upon gas chromatography<br />

might be used in <strong>the</strong> field to study scent marks as a<br />

way <strong>of</strong> determining species, sex, and reproductive<br />

status<br />

Communication is achieved by both olfactory and vocal means 2 . Olfactory communication<br />

is extremely important and is made possible by <strong>the</strong> scent glands located at <strong>the</strong><br />

wrist throat. This type <strong>of</strong> communication is used for transmitting physical state, location,<br />

and individual recognition. According to researchers at Duke University 3 when males<br />

mark, <strong>the</strong>y mark ei<strong>the</strong>r only with <strong>the</strong> wrist gland, or <strong>the</strong>y will go through a rubbing motion<br />

and mix <strong>the</strong> secretions <strong>of</strong> <strong>the</strong> shoulder gland with <strong>the</strong> secretions <strong>of</strong> <strong>the</strong> wrist gland,<br />

and <strong>the</strong>n deposit that. One <strong>of</strong> <strong>the</strong> big questions is whe<strong>the</strong>r <strong>the</strong>re's a difference between<br />

wrist marking and shoulder/wrist marking? What are <strong>the</strong> different messages encoded?<br />

Does <strong>the</strong> shoulder gland have a specific function in terms <strong>of</strong> message, or is it acting as<br />

sort <strong>of</strong> a fixative for <strong>the</strong> more volatile components <strong>of</strong> <strong>the</strong> wrist gland?<br />

1 R.A. Hayes, T.L. Morelli, P.C. Wright, Anogenital gland secretions <strong>of</strong> <strong>Lemur</strong> catta and Propi<strong>the</strong>cus verreauxi coquereli:<br />

A preliminary chemical examination, Am J Primatol 63:49-62, 2004<br />

2 Dugmore, S.J. and Evans, C.S. (1990) Discrimination <strong>of</strong> conspecific chemosignals by female ringtailed<br />

lemurs, <strong>Lemur</strong> catta L. In Macdonald, D.W., Muller-Schwarze, D. and Natynczuk, S.E. (eds), Chemical<br />

Signals in Vertebrates 5. Plenum Press, New York, pp. 360–36<br />

3 http://www.dukenews.duke.edu/2004/08/Drea<strong>Lemur</strong>scent_0804.html<br />

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http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

<strong>Scent</strong> Testing Methods<br />

<strong>Scent</strong> samples from lemurs were collected by absorbing approximately 10 µliters <strong>of</strong><br />

scent liquid from <strong>the</strong> scent gland onto a small cotton ball which was immediately placed<br />

in a sealed 2 mL vial and stored at 0 o C<br />

until just before testing. Samples were<br />

prepared for testing by removing <strong>the</strong> cap<br />

<strong>of</strong> <strong>the</strong> 2 mL vial and transferring <strong>the</strong><br />

sample into a larger septa-sealed 40 mL<br />

vial which was <strong>the</strong>n heated to 60 o C using<br />

<strong>the</strong> two-zone vial heater shown in Figure<br />

7. <strong>Lemur</strong> scents were analyzed using (1)<br />

direct sampling with <strong>the</strong> <strong>zNose</strong>® and (2)<br />

indirect or remote sampling with a tenax<br />

filled sorption tube which was <strong>the</strong>n<br />

desorbed and measured with <strong>the</strong> <strong>zNose</strong> ® .<br />

Direct Sampling<br />

Figure 7- Direct sampling scent vapors using vial<br />

heater accessory<br />

Vapors in <strong>the</strong> vial (lemur scent)<br />

were directly sampled using a side-ported<br />

needle attached to <strong>the</strong> inlet <strong>of</strong> <strong>the</strong> <strong>zNose</strong> ® as shown in Figure 7. Sample time was typically<br />

5-10 seconds, which removed approximately 2-4 mL <strong>of</strong> headspace vapor. Following<br />

sampling <strong>the</strong> vapor sample was analyzed in 20 seconds using a dB-5 column ramped<br />

from 40 o to 140 o C at 5 o C/second. Replicate measurements could be performed every 1.5minute.<br />

Remote Sampling<br />

Although requiring an additional step and<br />

more time, sampling scent vapors with a small<br />

battery operated pump and preconcentrating in a<br />

sorbtion tube filled with 250 milligrams <strong>of</strong> tenax has<br />

several advantages. First is <strong>the</strong> convenience <strong>of</strong> using<br />

a small 12 oz pump and battery to collect vapors in<br />

<strong>the</strong> field from subjects. Second, a higher sample<br />

flow enables a much larger vapor sample to be<br />

preconcentrated and measurement sensitivity well<br />

into <strong>the</strong> ppt concentration range can be achieved.<br />

The <strong>zNose</strong> is equipped with a desorber<br />

interface which enables it to quickly remove<br />

preconcentrated vapors from a sample collection<br />

tube as shown in Figure 8. The collection tube is<br />

heated to approximately 200 o C and <strong>the</strong>n<br />

preconcentrated vapors are transferred in 10 seconds<br />

into <strong>the</strong> inlet <strong>of</strong> <strong>the</strong> <strong>zNose</strong> ® and chemically analyzed.<br />

5<br />

Figure 8- Remote sampler and desorbtion<br />

heater.


http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

Direct Sampling Results<br />

<strong>Scent</strong> samples were heated<br />

to 60 o C and sampled directly with<br />

<strong>the</strong> <strong>zNose</strong>®. Vertically <strong>of</strong>fset<br />

replicate chromatograms using<br />

different detector sensitivity<br />

settings (temperature) for <strong>the</strong><br />

three samples are shown in<br />

Figures 9-11.<br />

The most notable in all<br />

samples was a compound with a<br />

Kovats index <strong>of</strong> approximately<br />

1352. Also evident was a very<br />

volatile compound which had an<br />

index <strong>of</strong> 738. Trace amounts <strong>of</strong><br />

o<strong>the</strong>r compounds are shown in <strong>the</strong><br />

tabulated results adjacent to each<br />

chromatogram.<br />

Increasing sensitivity <strong>of</strong><br />

direct measurements by lowering<br />

detector temperature was<br />

sometimes difficult due to <strong>the</strong><br />

large amount <strong>of</strong> water vapor<br />

present which tended to overload<br />

<strong>the</strong> detector at low temperatures.<br />

Vertically <strong>of</strong>fset traces<br />

comparing each sample using a<br />

10 o C detector are shown in Figure<br />

12. Samples 1061 and 1097 were<br />

more alike than sample 1081.<br />

Figure 9- Direct sampling sample no 1061<br />

Figure 10- Direct sampling sample no. 1081<br />

Figure 11- direct sampling sample no. 1097.<br />

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http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

Figure 12- Comparing samples analyzed using direct sampling and 10 o detector.<br />

Indirect Sampling<br />

Chromatograms <strong>of</strong> scent samples analyzed by first preconcentrating scent vapors<br />

with a tenax filled collection tube (remote sampler) followed by analysis using <strong>the</strong><br />

<strong>zNose</strong>® are shown in Figures 13-15. Water vapor in <strong>the</strong> desorbtion tubes was removed<br />

by passing 150 ccm <strong>of</strong> air through <strong>the</strong> tube at room temperature for 1 minute prior to desorbtion.<br />

As was seen in <strong>the</strong> previous direct sampling, <strong>the</strong> compound with a Kovats index<br />

<strong>of</strong> approximately 1352 again appears prominently. Samples 1061 and 1097 both<br />

show high concentrations <strong>of</strong> <strong>the</strong><br />

volatile compound with index <strong>of</strong><br />

740, however it is not present in<br />

sample no 1081. Trace amounts<br />

<strong>of</strong> o<strong>the</strong>r compounds are shown in<br />

<strong>the</strong> tabulated results adjacent to<br />

each chromatogram. Trace<br />

amounts <strong>of</strong> background organics<br />

from <strong>the</strong> vial and septa analyzed<br />

before <strong>the</strong> lemur scent sample<br />

was inserted are shown for comparison.<br />

Figure 13- 15 second sample <strong>of</strong> scent no 1061using remote<br />

sampler.<br />

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http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

Figure 14- 15 second sample <strong>of</strong> scent no 1081using remote<br />

sampler<br />

Figure 15- 15-second sample <strong>of</strong> scent no 1097 using remote<br />

sampler.<br />

Selecting compounds in lemur scent, which are not present in background odors,<br />

can be used to create a virtual sensor array for lemur scent. The process is shown in Figure<br />

16 using 5 major compounds from <strong>the</strong> chromatogram <strong>of</strong> scent sample no 1061. The<br />

compounds are selected by placing graphical bands over <strong>the</strong> selected peaks (top). Although<br />

<strong>the</strong> actual chemical names <strong>of</strong> <strong>the</strong> compounds are not known it is convenient to<br />

label <strong>the</strong>m according to <strong>the</strong>ir unique Kovats indices e.g. lemur 741.<br />

The indices <strong>of</strong> <strong>the</strong> virtual sensors are defined by a peak file (table), which includes<br />

user specified response factors, and alarm levels in any convenient units. Once <strong>the</strong> virtual<br />

sensor array is defined a simplified user interface showing just a sensor panel is used<br />

to replace <strong>the</strong> chromatogram display.<br />

8


http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

Figure 16- <strong>Lemur</strong> virtual <strong>Sensor</strong> Array defined by scent no 1061<br />

9


http://www.estcal.com/TechPapers/LifeScience/<strong>Lemur</strong><strong>Scent</strong>.doc<br />

Summary<br />

Chemical pr<strong>of</strong>iles associated with <strong>the</strong> scent <strong>of</strong> lemurs can contain a complex cocktail<br />

<strong>of</strong> odorous substances. A preliminary analysis <strong>of</strong> 3 scent samples with <strong>the</strong> <strong>zNose</strong>®,<br />

an ultra-fast portable GC, has indicated high concentrations <strong>of</strong> a very volatile compound,<br />

index = 740, and a second much less volatile compound with an index <strong>of</strong> 1352. Trace<br />

levels <strong>of</strong> many o<strong>the</strong>r organic compounds were also detected.<br />

The <strong>zNose</strong>® is a new quantitative testing tool for in-situ vapor analysis and<br />

achieves near real time speed. It is particularly useful for many life science applications<br />

where real time in-situ biochemical measurements are needed. A remote sampler interface<br />

compliments scent measurements, increases sensitivity, and provides a simple tool<br />

for collecting scent samples in <strong>the</strong> field. Future work might be to use <strong>the</strong> <strong>zNose</strong> ® to<br />

quantify lemur scents and relate <strong>the</strong> findings to factors such as species, sex, and reproductive<br />

status. Real time measurements might prove useful in understanding lemur olfactory<br />

communication. It might also be used to measure <strong>the</strong> difference between wrist marking<br />

and shoulder/wrist marking, how different messages are encoded, and determine <strong>the</strong><br />

functions associated with specific scent glands.<br />

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