Methods for Protein Structure Prediction - Fox Chase Cancer Center
Methods for Protein Structure Prediction - Fox Chase Cancer Center
Methods for Protein Structure Prediction - Fox Chase Cancer Center
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Always requires:<br />
<strong>Prediction</strong> at Each Stage<br />
Alignment/Identification<br />
Loops<br />
Side-chains<br />
Refinement<br />
1. Search strategy (MC/MD, combinatorics, robotics, simulated annealing,<br />
dynamic programming, exhaustive)<br />
2. Scoring/energy function (physics, statistics)<br />
3. Training set and a LARGE testing set to benchmark competing methods