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QM/MM (CPMD): Dipole moment<br />
• Gas phase calcula/on <br />
– Geometry op4miza4on, property calcula4on <br />
• Acetone in water at room temperature <br />
– Prepara4on <br />
• Generate parameters missing in the standard force field: <br />
par4al charges (restrained electrosta4c poten4al (RESP) procedure) <br />
• Build the system: generate topology and ini4al coordinates files; <br />
solute molecule (including par4al charges and other force constants; water box <br />
(including standard force field for water) <br />
– Classical pre-‐equilibra4on <br />
• Restraint minimiza4on (relax the solvent while fixing the solute) <br />
• Unrestrained minimiza4on <br />
• Hea4ng to 300 K <br />
• Adjust the density (volume) by an NPT MD simula4on <br />
– QM/MM calcula4on <br />
• Prepara4on: Reimage coordinates, convert to GROMOS format <br />
• Simulated annealing (“instead of op4miza4on”) <br />
• Hea4ng <br />
• Produc4on run (NVT ensemble calcula4on) <br />
• Property calcula4on