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QM – MM - QM/MM<br />
Ab initio electronic structure theory:<br />
Density functional theory<br />
Classical all-atom force field<br />
ˆΗΨ = E 0<br />
Ψ<br />
E eff = E MM<br />
= E bonded<br />
+ E non−bonded<br />
Ab initio molecular dynamics:<br />
Car-Parrinello MD (CPMD)<br />
MR = −∇E 0<br />
Hybrid QM/MM<br />
Classical molecular dynamics<br />
Newton equation of motion<br />
MR = −∇E eff<br />
L CP<br />
=<br />
T<br />
<br />
I<br />
<br />
EKINC (T e )<br />
1<br />
∑<br />
2 M <br />
<br />
I<br />
R 2 I<br />
+ ∑ µ φ i<br />
φ i<br />
I<br />
i<br />
<br />
<br />
kinetic energy (nuclei + electrons/orbitals)<br />
EKS (V e )<br />
<br />
<br />
− Ψ 0<br />
Ĥ e<br />
Ψ<br />
<br />
<br />
0<br />
potential energy<br />
+ constraints <br />
<br />
orthonormality