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Sander: 3. MD at 300 K (NVT ensemble)<br />
• 3-heating.inp (continued):<br />
...<br />
SHAKE (Verlet) imposes constraints by the <br />
method of Lagrange undetermined mul4pliers. <br />
! Shake bond length constraints(only for MD) removes bond stretching degrees of freedom <br />
ntc=2,<br />
! Bonds involving hydrogens are constrained<br />
! Pressure regulation<br />
ntp=0, ! DEFAULT: No pressure scaling<br />
pres0=1.0, ! DEFAULT: Reference pressure (in atm)<br />
taup=0.2 ! Pressure relaxation time (in ps)<br />
/<br />
Restraints on Acetone<br />
5.0<br />
restraint force constant („weak“) <br />
RES 1<br />
END<br />
END<br />
EOF