Development and Application of Novel ... - Jacobs University

List of Publication
1. Verma R, Schwaneberg U, Roccatano D. Conformational dynamics of the FMN-binding
reductase domain of monooxygenase P450BM-3. J Chem Theory and Comput 2012, DOI:
10.1021/ct300723x.
2. Verma R, Schwaneberg U, Roccatano D. Computer-aided protein directed evolution: a
review of web servers, databases and other computational tools for protein
engineering. Computational and Structural Biotechnology Journal 2012, 2 (3),
e201209008.
3. Ruff AJ, Marienhagen J, Verma R, Roccatano D, Genieser HG, Niemann P, Shivange AV,
Schwaneberg U. dRTP and dPTP a complementary nucleotide couple for the Sequence
Saturation Mutagenesis (SeSaM) method. J Mol Catal B-Enzym 2012, 84, 40-47.
4. Verma R, Schwaneberg U, Roccatano D. MAP 2.0 3D: a sequence/structure based server
for protein engineering. ACS Synth Bio. 2012, 1 (4), 139-150.
5. Zhu L, Verma R, Roccatano D, Ni Y, Sun Z, Schwaneberg U. A potential antitumor drug
(arginine deiminase) reengineered for efficient operation under physiological
conditions. ChemBioChem 2010, 11, 2294-2301. [inside cover page]
6. Verma R, Schwaneberg U, Roccatano D. Insight into the redox partner interaction
mechanism in cytochrome P450BM-3 using molecular dynamics simulations.
(manuscript under preparation)
7. Verma R, Schwaneberg U, Roccatano D. A molecular dynamics study of the interactions
between P450BM-3 domains and Coblat(II)Sepulchrate as an electron transfer
mediator. (manuscript under preparation)
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