Bacteria from Fish and Other Aquatic Animals - Survival-training.info

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Aquatic Animal Species and Organism Relationship 11 Japanese flounder, also known as Olive flounder (Paralichthys olivaceus Temminck and Schlegel) Summer flounder (Paralichthys dentatus Linnaeus) Grayling (Thymallus thymallus Linnaeus) Green knifefish (Eigemannia virescens Valenciennes) Greenling –marinefish (Hexagrammos otakii) 1. Atypical Aeromonas salmonicida 2. Edwardsiella tarda 3. Lactococcus garvieae 4. Nocardia seriolae 5. Photobacterium damselae ssp. piscicida 6. Streptococcus iniae 7. Tenacibaculum maritimum 8. Vibrio ichthyoenteri 1. Mycobacterium spp. with homology to M. marinum and M. ulcerans 2. Vibrio (carchariae) harveyi 1. Aeromonas salmonicida ssp. salmonicida Grouper See Sea bass Haddock (Melanogrammus aeglefinus Linnaeus). Family Gadidae – cod and haddock Halibut Atlantic halibut (Hippoglossus hippoglossus Linnaeus) Greenland halibut (Reinhardtius hippoglossoides Walbaum) 2. Atypical Aeromonas salmonicida 3. Yersinia ruckeri 9. Weissella hellenica strain DS-12 2. Septicaemia, focal suppurative or granulomatous lesions, cutaneous ulcerations 4. Tubercules in kidney, gills and spleen. Abscesses on epidermis 5. Haemorrhagic septicaemia and white areas of granuloma in the kidney, liver, spleen 8. Intestinal necrosis, opaque intestines 9. Present in intestine 1. Granulomas in the kidney, large red-tan coloured multilobulated mass in kidney 2. Reddening around anal area, distended abdomen filled with fluid, enteritis and necrosis 1. Infection 2. Edwardsiellosis 3. Streptococcosis 4. Nocardiosis 5. Fish pasteurellosis 6, 7, 8. Mortality 9. Probiotic potential 1, 2. Skin ulcers 1. Furunculosis 2, 3. Infection 1. Mycobacteriosis 2. Flounder necrotizing enteritis (FINE) Edwardsiella ictaluri Enteric septicaemia 426 Atypical Aeromonas salmonicida Infection 385 Atypical Aeromonas salmonicida Skin ulcers Infection 323 1. Atypical Aeromonas salmonicida 2. Tenacibaculum ovolyticum 1. Skin ulcers 2. Dissolves chorion and zona radiata of the egg shells Arthrobacter rhombi Organism isolated from spleen and internal organs 1. Infection 2. Opportunistic pathogen of eggs and larvae 139 273 385 389 442 455 567 570 373 710 209 323 352 323 324 Pathogenicity not determined 600 continued
12 Chapter 1 Table 1.1. Continued. Host Pathogen Normal flora Tissue site Disease status Ref Herring Baltic herring (Clupea harengus membras Linnaeus) Human (Homo sapiens) 1. A. allosaccharophila 2. Aeromonas caviae 3. Aeromonas hydrophila ssp. 1. Pseudomonas anguilliseptica 2. Photobacterium iliopiscarium 1. Haemorrhages in the eye 2. Intestine dhakensis 4. Aeromonas hydrophila 5. A. janadaei 6. A. schubertii 7. A. sobria 8. A. trota 9. A. veronii ssp. sobria 10. Aeromonas veronii ssp. veronii 11. Brucella abortus 12. Brucella species 13. Burkholderia (Pseudomonas) pseudomallei 14. Chromobacterium violaceum 15. Cryptococcus neoformans 16. Edwardsiella tarda 17. Erysipelothrix rhusiopathiae 18. Granulicatella elegans 19. Halomonas venusta 20. Mycobacterium marinum 21. Photobacterium damselae ssp. damselae 22. Rahnella aquatilis 23. Raoultella planticola 24. Shewanella algae 25. Streptococcus iniae 26. Vagococcus fluvialis 27. Vibrio cholerae 01 & 0139 28. Vibrio cholerae non-01 1, 2. Faeces 3, 4. Faeces 5. Wound infection, stool, blood 6. Wound, abscess, blood, pleural fluid 7. 9, 10. Faeces 11. Respiratory infection, abortion 12. Headaches, lassitude, sinusitis 13. Wound infections, pneumonia and septicaemia 14. Wound infections 15. Cerebral spinal fluid 16. Intestine 17. Suppurating skin lesions 18. Endocarditis 19. Wound with watery discharge following fish bite 20. Skin lesions 22. Contaminated intravenous fluid 24. Leg ulcers, septicaemia, otitis media, faeces 25. Wounds following handling fish 26. Bite-wound, blood culture isolates and from peritoneal fluid 27. Faeces 28. Blood culture, faeces 29. Blood and spinal fluid 30, 31, 32, 33. Faeces 34. Wounds, faeces 1. Disease 2. Non-pathogenic 1. Diarrhoea, renal failure in infant 2, 3, 4, 8. Diarrhoea 5. Wound infection, diarrhoea 6, 8. Infection 7. Acute renal failure in an infant 9, 10. Diarrhoea 11, 12. Brucellosis 13. Melioidosis 14. Infection 15. Zoonosis, mortality 17. Erysipeloid 18.Endocarditis 19. Wound infection 20. Infection 21. Wound infection 22. Sepsis. Also infection in immunocompromised hosts 23. Septicaemia in newborns 24. Infection 25. Cellulitis 26. Clinical infections 27. Cholera 28. Cellulitis, meningoencephalitis, septicaemia, diarrhoea 29. Meningitis 30, 31, 32. Diarrhoea 33. Gastroenteritis, food poisoning 34. Infection, food poisoning 503 599 767 120 123 125 142 143 151 177 196 255 259 276 310 346 347 348 378 383 392 482 527 555 588 653 732 792 816 822
Page 1 and 2: Bacteria from Fish and Other Aquati
Page 3 and 4: Contents List of Tables and Figures
Page 5 and 6: List of Tables and Figures Tables T
Page 7 and 8: Foreword While aquatic animal disea
Page 9 and 10: Acknowledgements xi Principal spons
Page 11 and 12: Introduction xiii Medical laborator
Page 13 and 14: Photographs of Culture and Microsco
Page 15 and 16: Fig. 11. Aeromonas veronii ssp. sob
Page 17 and 18: Fig. 22. Edwardsiella tarda on BA,
Page 19 and 20: Fig. 43. Listonella anguillarum, Gr
Page 21 and 22: Fig. 55. Plesiomonas shigelloides,
Page 23 and 24: Fig. 69. Vibrio alginolyticus, Gram
Page 25 and 26: Fig. 82. Vibrio harveyi on MSA-B, 4
Page 27 and 28: Fig. 98. Vibrio proteolyticus on BA
Page 29 and 30: Fig. 118. Methyl Red reaction. Posi
Page 31 and 32: 2 Chapter 1 Table 1.1. Host species
Page 33 and 34: 4 Chapter 1 Table 1.1. Continued. H
Page 39: 10 Chapter 1 Table 1.1. Continued.
Page 43 and 44: 14 Chapter 1 Table 1.1. Continued.
Page 65 and 66: 36 Chapter 1 Bacterial gill disease
Page 67 and 68: 38 Chapter 1 Table 1.2. Bacterial p
Page 91 and 92:
62 Chapter 1 Table 1.2. Continued.
Page 93 and 94:
Page 95 and 96:
Page 97 and 98:
Page 99 and 100:
Page 101 and 102:
Page 103 and 104:
Page 105 and 106:
76 Chapter 1 of the test, or the us
Page 107 and 108:
78 Chapter 1 in a similar manner to
Page 109 and 110:
80 Chapter 1 phenotypic results rec
Page 111 and 112:
82 Chapter 1 formerly Y. enterocoli
Page 113 and 114:
84 Chapter 2 2.1 Specimen Collectio
Page 115 and 116:
86 Chapter 2 Table 2.3. Specific cu
Page 117 and 118:
Page 119 and 120:
Page 121 and 122:
Page 123 and 124:
Page 125 and 126:
Page 127 and 128:
Page 129 and 130:
Page 131 and 132:
Page 133 and 134:
Page 135 and 136:
Page 137 and 138:
Page 139 and 140:
Page 141 and 142:
Page 143 and 144:
114 Chapter 2 reaction, oxidase and
Page 145 and 146:
116 Chapter 2 API 20E API 20NE API
Page 147 and 148:
118 Chapter 3 Table 3.1. Interpreta
Page 149 and 150:
120 Chapter 3 to produce alkaline p
Page 151 and 152:
122 Chapter 3 V. splendidus biovar
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124 Chapter 3 are likely to produce
Page 155 and 156:
126 Chapter 3 Table 3.2. Carnobacte
Page 157 and 158:
128 Chapter 3 reported a negative r
Page 159 and 160:
130 Chapter 3 Table 3.5. Further di
Page 161 and 162:
132 Chapter 3 to be due to the diff
Page 163 and 164:
134 Chapter 3 control and a negativ
Page 165 and 166:
136 Chapter 3 Yersinia ruckeri Stra
Page 167 and 168:
138 Chapter 4 Fig. 4.1. Schematic f
Page 169 and 170:
140 Table 4.1. Aeromonas salmonicid
Page 171 and 172:
142 Table 4.3. Aeromonas spp. - mot
Page 173 and 174:
144 Table 4.5. Brucella spp. Test G
Page 175 and 176:
146 Table 4.8. Cytophaga-Flavobacte
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148 Table 4.8. Continued. Test Gm O
Page 179 and 180:
150 Table 4.10. Continued. Test Gm
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Page 183 and 184:
Page 185 and 186:
Page 187 and 188:
Page 189 and 190:
160 Table 4.13. Gram-positive cocci
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Page 193 and 194:
164 Table 4.14. Gram-positive rods.
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166 Table 4.15. Mycobacterium and N
Page 197 and 198:
168 Table 4.17. Mycoplasma spp. Tes
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Page 201 and 202:
Page 203 and 204:
Page 205 and 206:
Page 207 and 208:
178 Table 4.23. API 20E database bi
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180 Table 4.23. Continued. Tests on
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182 Table 4.23. Continued. Tests on
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184 Table 4.24. API 20E database nu
Page 215 and 216:
186 Table 4.24. Continued. Organism
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190 Table 4.25. API 20E database nu
Page 221 and 222:
192 Table 4.25. Continued. API 20 E
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Page 225 and 226:
Page 227 and 228:
198 Table 4.26. Continued. Listonel
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200 Table 4.27. API 50CH database b
Page 231 and 232:
202 Table 4.27. Continued. 1 2 3 4
Page 233 and 234:
Page 235 and 236:
Page 237 and 238:
208 Table 4.28. API Coryne database
Page 239 and 240:
210 Table 4.30. API Rapid ID32 Stre
Page 241 and 242:
212 Table 4.31. API ZYM database re
Page 243 and 244:
214 Table 4.31. Continued. Well 1 2
Page 245 and 246:
216 Table 4.31. Continued. Well 1 2
Page 247 and 248:
218 Table 4.32. Strains quoted in r
Page 249 and 250:
Page 251 and 252:
5 Technical Methods 5.1 Total Bacte
Page 253 and 254:
224 Chapter 5 Incubation Place plat
Page 255 and 256:
226 Chapter 6 Table 6.1. List of sp
Page 257 and 258:
Page 259 and 260:
Page 261 and 262:
232 Chapter 6 Edwardsiella spp. PCR
Page 263 and 264:
234 Chapter 6 Extraction of DNA fro
Page 265 and 266:
236 Chapter 6 The nucleotides can a
Page 267 and 268:
238 Chapter 6 Table 6.3. Universal
Page 269 and 270:
240 Chapter 6 Visualize DNA on agar
Page 271 and 272:
242 Chapter 6 document with the seq
Page 273 and 274:
7 Preparation of Media for Culture
Page 275 and 276:
246 Chapter 7 Blood agar - BA Reage
Page 277 and 278:
248 Chapter 7 Edwardsiella ictaluri
Page 279 and 280:
250 Chapter 7 Flexibacter maintenan
Page 281 and 282:
252 Chapter 7 Marine 2216 agar (Dif
Page 283 and 284:
254 Chapter 7 Mycoplasma medium - m
Page 285 and 286:
256 Chapter 7 R2A agar (Oxoid CM 90
Page 287 and 288:
258 Chapter 7 Siem selective medium
Page 289 and 290:
260 Chapter 7 VVM Selective medium
Page 291 and 292:
262 Chapter 7 Brucella: growth on s
Page 293 and 294:
264 Chapter 7 Carbohydrate fermenta
Page 295 and 296:
266 Chapter 7 Congo Red. Tests for
Page 297 and 298:
268 Chapter 7 Furunculosis agar (Fo
Page 299 and 300:
270 Chapter 7 Indoxyl acetate hydro
Page 301 and 302:
272 Chapter 7 Glucose (10% w/v) 10
Page 303 and 304:
274 Chapter 7 ONPG - o-nitrophenyl-
Page 305 and 306:
276 Chapter 7 Salt - 20% stock solu
Page 307 and 308:
Further Reading and Other Informati
Page 309 and 310:
280 Further Reading List of Bacteri
Page 311 and 312:
282 Appendix Common name Scientific
Page 313 and 314:
Page 315 and 316:
Page 317 and 318:
288 Glossary C Ca Cat CBBA CCA CCRC
Page 319 and 320:
290 Glossary O Oxidative (aerobic m
Page 321 and 322:
References 1 Abbott, S.L., Cheung,
Page 323 and 324:
294 References otherwise infected w
Page 325 and 326:
296 References 87 Bergman, S., Seli
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298 References Journal of Systemati
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300 References ribonucleic acid seq
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302 References ‘winter disease’
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304 References 273 Fukuda, Y., Mats
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306 References resistance of virule
Page 337 and 338:
308 References and an emended descr
Page 339 and 340:
310 References the Enterobacteriace
Page 341 and 342:
312 References an epizootic of cult
Page 343 and 344:
314 References 512 Macián, M.C., L
Page 345 and 346:
316 References Plecoglossus altivel
Page 347 and 348:
318 References sponge. Internationa
Page 349 and 350:
320 References fish pathogens. Dise
Page 351 and 352:
322 References Listonella and reass
Page 353 and 354:
324 References 750 Toranzo, A.E., B
Page 355 and 356:
326 References 795 Vreeland, R.H.,
Page 357 and 358:
328 References 842 Wood, R. (1965)
Page 359 and 360:
330 Index Aeromonas continued A. ca
Page 361 and 362:
332 Index API identification system
Page 363 and 364:
334 Index Brucella agar 246 Brucell
Page 365 and 366:
336 Index Colony forming units (CFU
Page 367 and 368:
338 Index Dolphin continued Striped
Page 369 and 370:
340 Index Flavobacterium species co
Page 371 and 372:
342 Index Granulicatella continued
Page 373 and 374:
344 Index Laminaria 59 Laminaria ja
Page 375 and 376:
346 Index Mycobacterium continued M
Page 377 and 378:
348 Index Peled see Whitefish Pelec
Page 379 and 380:
350 Index Pseudoalteromonas continu
Page 381 and 382:
352 Index Salmonella continued S. j
Page 383 and 384:
354 Index Shewanella marine agar (S
Page 385 and 386:
356 Index Strontium chloride B enri
Page 387 and 388:
358 Index Vibrio continued V. brasi
Page 389 and 390:
360 Index Vibrio continued V. scoph
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